The new datasheets for the fastIBD PCA plots have been released. Would someone be so kind to run my results for me please? My Eurogenes id is CA1. I would really appreciate it if someone could.
http://eurogenes.blogspot.ca/2014/08...rasia-and.html
Here is what David said about them below to get results.
Here are those datasheets. They should produce plots very similar to those above (West Eurasian, European and Finnish). I tried to include as many regular and not so regular contacts as possible. Apologies if I missed anyone out.
https://drive.google.com/file/d/0B9o...it?usp=sharing
You can run them with gnuplot. To get a 2D plot based on the first two components, try:
plot 'PCA1.txt' using 2:3:1 with labels
To use dimensions 1&3, try:
plot 'PCA1.txt' using 2:4:1 with labels
To get a 3D plot based on the the first three dimensions, try:
splot 'PCA1.txt' using 2:3:4:1 with labels