1
Pure Jomons didn't exist even when Yayoi arrived to Japan. Some Jomon groups were heavily mixed.
All these 3 Jomon groups have M7a, D1, N9b in different percentages with the 2nd group being the purest and most dominant
" In another study, ancient DNA recovered from 16 Jomon skeletons excavated from Funadomari site, Hokkaido, Japan was analyzed to elucidate the genealogy of the early settlers of the Japanese archipelago. Both the control and coding regions of their mitochondrial DNA were analyzed in detail, and 14 mtDNAs could be securely assigned to relevant haplogroups. Haplogroups D1a, M7a, and N9b were observed in these individuals, and N9b was by far the most predominant. The fact that haplogroups N9b and M7a were observed in Hokkaido Jomons bore out the hypothesis that these haplogroups are the (pre-) Jomon contribution to the modern Japanese mtDNA pool.[45] In another study of ancient DNA published by the same authors in 2011, both the control and coding regions of mitochondrial DNA (mtDNA) recovered from Jomon skeletons excavated from the northernmost island of Japan, Hokkaido, were analyzed in detail, and 54 mtDNAs were confidently assigned to relevant haplogroups. Haplogroups N9b, D4h2, G1b, and M7a were observed in these individuals, with N9b being the predominant one. "
Source :Adachi N, Shinoda K, Umetsu K, Kitano T, Matsumura H, Fujiyama R, Sawada J, and Tanaka M, "Mitochondrial DNA analysis of Hokkaido Jomon skeletons: remnants of archaic maternal lineages at the southwestern edge of former Beringia," Am J Phys Anthropol. 2011 Nov;146(3):346-60. doi:10.1002/ajpa.21561. Epub 2011 Sep 27.
N9b
68% in 1st Jomon group
60% in 2nd Jomon group
16% in 3rd Jomon group
M7a
7.9% in 1st Jomon group
36% in 2nd Jomon group
3.5% in 3rd Jomon group
Jomon mtDNA in Japanese and Okinawans ( M7a and N9b )
" Studies published in 2004 and 2007 show the combined frequency of M7a and N9b which are believed by some to be pre-jomon maternal markers to be at least 28% in Okinawans (7/50 M7a1, 6/50 M7a(xM7a1), 1/50 N9b), 17.6% in Ainus (8/51 M7a(xM7a1), 1/51 N9b), and 10% (97/1312 M7a(xM7a1), 1/1312 M7a1, 28/1312 N9b) to 17% (15/100 M7a1, 2/100 M7a(xM7a1)) in mainstream Japanese. "
Source: M. Tanaka, V. M. Cabrera, A. M. González et al. (2004), "Mitochondrial Genome Variation in Eastern Asia and the Peopling of Japan" [3]
So in Japanese Jomon mtDNA is 10 - 17% on average where as Jomon Y-DNA is 37%
In Okinawans Jomon mtDNA is 28% on average where as Jomon Y-DNA is 56%
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