Ok, here we go.
Code:
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-- DIY Dodecad v 2.1 --------------------------------------
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-- Copyright (c) 2011 Dienekes Pontikos -------@@-----@@---
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-- More information: ---------------------------@@@@@@@----
----- Dienekes' Anthropology Blog -------------@@----------
-------- http://dienekes.blogspot.com ---------@@----------
----- The Dodecad Ancestry Project ------------@@@@@@@@@---
-------- http://dodecad.blogspot.com ----------------------
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16 ancestral populations
116463 total SNPs
1 flipped SNPs
23993 heterozygous SNPs
604 no-calls
42928 absent SNPs
0.626216 genotype rate
mode genomewide
43532 SNPs missing (no-call or absent)
10800 dQ: 1.000E-07 goal: 1.000E-07
10802 total iterations
1.000E-07 final dQ
----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------
0.65% Amerindian
0.00% Ancestor
14.43% Steppe
0.05% Indian
0.00% Arctic
0.00% Australian
20.53% Caucasian
3.52% EastAfrican
17.58% NorthEastEuropean
7.53% NearEast
22.07% Neolithic
11.37% NorthAfrican
0.63% Oceanic
0.00% Siberian
0.00% SouthEastAsian
1.64% Subsaharian
CPU time = 379.81 sec
4Admix, you should disregard 1,2 population approximations and go straight to 3,4 population approximations.
Code:
16 components mode.
Population data has been read. 502 populations found.
Personal data has been read. 20 approximations mode.
Person: Test3.txt
Threshold of components set to 0.39%
Least-squares method.
Using 1 population approximation:
1 Portuguese @ 11.798352
2 Switzerland @ 12.753583
3 Provance @ 13.67559
4 Belmonte_Jewish @ 13.682979
5 Romanians_Gorj @ 14.207786
6 Italy-Friul @ 14.380832
7 Romanians_Apuseni @ 14.882006
8 Austria @ 15.136611
9 Spanish_Canarias_IBS @ 15.289436
10 Corsican @ 15.370436
11 Italy_North @ 15.499315
12 France @ 15.525893
13 Montenegrian @ 15.752677
14 Bulgaria @ 15.801058
15 Spain @ 15.848176
16 Germany_South @ 15.849349
17 French_East @ 16.003919
18 Hungary @ 16.028423
19 Romanians @ 16.045316
20 Croat-BH @ 16.111404
502 iterations.
Using 2 populations approximation:
1 Libyan+Norwegian @ 6.435739
2 Icelandic+Libyan @ 6.54976
3 Libyan+Swedish @ 6.591117
4 Polish_East+Tunisian @ 6.636175
5 Dutch+Tunisian @ 6.669145
6 Polish_West+Tunisian @ 6.823351
7 Libyan+Orcadian @ 6.844881
8 Swedish+Tunisian @ 6.870797
9 Sorb+Tunisian @ 6.891293
10 German_Lipsian+Tunisian @ 6.907962
11 Libyan+Scottish_Argyll_Bute_GBR @ 6.992995
12 English_Kent_GBR+Libyan @ 7.018577
13 Slovak+Tunisian @ 7.029363
14 Libyan+Shetlandic @ 7.029664
15 English_Cornwall_GBR+Libyan @ 7.048523
16 Shetlandic+Tunisian @ 7.120778
17 Tunisian+Ukranian @ 7.168409
18 Libyan+Scottish_Dumfries_Galloway @ 7.170043
19 Irish_Connacht+Libyan @ 7.178621
20 Libyan+Scottish_Borders @ 7.185382
126253 iterations.
Using 3 populations approximation:
1 50% Icelandic +25% Libyan_Jew +25% Tunisian @ 2.430637
2 50% Norwegian +25% Moroccan_Jewish +25% Tunisian @ 2.518872
3 50% Icelandic +25% Moroccan_Jewish +25% Tunisian @ 2.550836
4 50% Icelandic +25% Tunisian +25% Tunisian_Jewish @ 2.607196
5 50% Icelandic +25% Libyan_Jewish +25% Tunisian @ 2.647773
6 50% Icelandic +25% Algerian +25% Libyan_Jewish @ 2.65516
7 50% Icelandic +25% Tunisian +25% Tunisian_Jew @ 2.694379
8 50% Norwegian +25% Libyan_Jew +25% Tunisian @ 2.705861
9 50% Swedish +25% Moroccan_Jewish +25% Tunisian @ 2.724696
10 50% Icelandic +25% Moroccan_Jew +25% Tunisian @ 2.744142
11 50% Icelandic +25% Algerian +25% Samaritan @ 2.765902
12 50% Norwegian +25% Algerian +25% Libyan_Jewish @ 2.79571
13 50% Norwegian +25% Tunisian +25% Tunisian_Jewish @ 2.795772
14 50% Icelandic +25% Algerian +25% SephardiJewTurkey @ 2.823116
15 50% Icelandic +25% Algerian +25% Tunisian_Jewish @ 2.830184
16 50% Norwegian +25% Moroccan_Jew +25% Tunisian @ 2.84856
17 50% Norwegian +25% Libyan_Jewish +25% Tunisian @ 2.859165
18 50% Icelandic +25% Libyan_Jewish +25% Shaigi_WGA @ 2.880943
19 50% Norwegian +25% Algerian +25% Moroccan_Jewish @ 2.915567
20 50% Swedish +25% Algerian +25% Moroccan_Jewish @ 2.918383
31819882 iterations.
Using 4 populations approximation:
1 Icelandic+Moroccan_Jewish+Swedish+Tunisian @ 2.412546
2 Icelandic+Icelandic+Libyan_Jew+Tunisian @ 2.430637
3 English_Kent_GBR+Estonian+Moroccan_Jewish+Tunisian @ 2.460383
4 Moroccan_Jewish+Norwegian+Swedish+Tunisian @ 2.485842
5 Finn-West+Icelandic+Moroccan_Jewish+Tunisian @ 2.507593
6 Icelandic+Moroccan_Jewish+Norwegian+Tunisian @ 2.518096
7 Moroccan_Jewish+Norwegian+Norwegian+Tunisian @ 2.518872
8 Estonian+Moroccan_Jewish+Orcadian+Tunisian @ 2.526312
9 Finn-West+Moroccan_Jewish+Norwegian+Tunisian @ 2.529715
10 English_Cornwall_GBR+Estonian+Moroccan_Jewish+Tunisian @ 2.5351
11 English_Kent_GBR+Latvian+Moroccan_Jewish+Tunisian @ 2.535955
12 Latvian+Moroccan_Jewish+Orcadian+Tunisian @ 2.537551
13 Finn-West+Moroccan_Jewish+Orcadian+Tunisian @ 2.53876
14 Icelandic+Icelandic+Moroccan_Jewish+Tunisian @ 2.550836
15 Icelandic+Libyan_Jew+Norwegian+Tunisian @ 2.555368
16 English_Cornwall_GBR+Latvian+Moroccan_Jewish+Tunisian @ 2.572216
17 Icelandic+Icelandic+Tunisian+Tunisian_Jewish @ 2.607196
18 Latvian+Moroccan_Jewish+Scottish_Argyll_Bute_GBR+Tunisian @ 2.621196
19 Icelandic+Icelandic+Libyan_Jewish+Tunisian @ 2.647773
20 Estonian+Moroccan_Jewish+Scottish_Argyll_Bute_GBR+Tunisian @ 2.648512
21 Icelandic+Moroccan_Jewish+Polish+Tunisian @ 2.653852
22 Algerian+Icelandic+Icelandic+Libyan_Jewish @ 2.65516
23 English_Kent_GBR+Lithuanian+Moroccan_Jewish+Tunisian @ 2.658468
24 Finn-West+Icelandic+Moroccan_Jew+Tunisian @ 2.663213
25 Lithuanian+Moroccan_Jewish+Orcadian+Tunisian @ 2.672025
26 Icelandic+Norwegian+Tunisian+Tunisian_Jewish @ 2.687373
27 Icelandic+Icelandic+Tunisian+Tunisian_Jew @ 2.694379
28 Estonian+Libyan_Jewish+Orcadian+Shaigi_WGA @ 2.702193
29 Icelandic+Moroccan_Jewish+Polish_West+Tunisian @ 2.705212
30 Libyan_Jew+Norwegian+Norwegian+Tunisian @ 2.705861
31 Finn-West+Moroccan_Jewish+Scottish_Argyll_Bute_GBR+Tunisian @ 2.708418
32 Algerian+Icelandic+Libyan_Jewish+Norwegian @ 2.71072
33 Icelandic+Moroccan_Jewish+Sorb+Tunisian @ 2.72429
34 Moroccan_Jewish+Swedish+Swedish+Tunisian @ 2.724696
35 English_Kent_GBR+Estonian+Moroccan_Jewish+Shaigi_WGA @ 2.726405
36 Latvian+Libyan_Jewish+Orcadian+Shaigi_WGA @ 2.727068
37 Latvia+Moroccan_Jewish+Orcadian+Tunisian @ 2.727191
38 English_Cornwall_GBR+Lithuanian+Moroccan_Jewish+Tunisian @ 2.728127
39 Center-Russian+Icelandic+Moroccan_Jewish+Tunisian @ 2.729495
40 Moroccan_Jewish+Orcadian+Polish+Tunisian @ 2.730409
304048207 iterations.
Gaussian method.
Noise dispersion set to 0.31652
Using 1 population approximation:
1 Portuguese @ 6.391055
2 Belmonte_Jewish @ 7.221396
3 Maltese @ 7.734804
4 Spanish_Canarias_IBS @ 8.411174
5 Spanish_Extremadura_IBS @ 8.512818
6 Corsican @ 8.61155
7 Spanish_Galicia_IBS @ 8.712956
8 Ashkenazim @ 8.791527
9 Sicilian @ 8.942446
10 Ashkenazi_Jew @ 9.347325
11 Spanish_Andalucia_IBS @ 9.397122
12 Italy_Abruzzo @ 9.469011
13 Ashkenazy @ 9.670549
14 Spain @ 9.671479
15 Spanish_Murcia_IBS @ 9.86069
16 Spanish_Castilla_la_Mancha_IBS @ 9.862672
17 Italian_South @ 9.864772
18 Spaniards @ 9.918193
19 Italian_Jewish @ 9.96473
20 Provance @ 10.176566
502 iterations.
Using 2 populations approximation:
1 Polish_East+Shaigi_WGA @ 5.323162
2 English_Kent_GBR+Shaigi_WGA @ 5.419262
3 Dutch+Shaigi_WGA @ 5.421041
4 Shaigi_WGA+Swedish @ 5.462967
5 Croatian+Shaigi_WGA @ 5.469767
6 Croat-Croatia+Shaigi_WGA @ 5.49966
7 German_Lipsian+Shaigi_WGA @ 5.514997
8 Shaigi_WGA+Sorb @ 5.528999
9 Polish_West+Shaigi_WGA @ 5.536689
10 Hungarian_Coriell+Shaigi_WGA @ 5.541238
11 Orcadian+Shaigi_WGA @ 5.556668
12 Shaigi_WGA+Ukrainian_West @ 5.577832
13 Hungarians+Shaigi_WGA @ 5.590909
14 Serbian_BH+Shaigi_WGA @ 5.595799
15 Hungarian_Metspalu+Shaigi_WGA @ 5.603744
16 Norwegian+Shaigi_WGA @ 5.608518
17 Shaigi_WGA+Slovak @ 5.627172
18 Polish+Shaigi_WGA @ 5.6595
19 English_Kent_GBR+Tunisian @ 5.668262
20 Polish_East+Tunisian @ 5.673023
126253 iterations.
Using 3 populations approximation:
1 50% English_Kent_GBR +25% Shaigi_WGA +25% Tunisian_Jewish @ 4.511434
2 50% Orcadian +25% Shaigi_WGA +25% Tunisian_Jewish @ 4.550637
3 50% Swedish +25% Shaigi_WGA +25% Tunisian_Jewish @ 4.600446
4 50% English_Kent_GBR +25% Italian_Jewish +25% Shaigi_WGA @ 4.619689
5 50% Icelandic +25% Shaigi_WGA +25% Tunisian_Jewish @ 4.628515
6 50% Norwegian +25% Shaigi_WGA +25% Tunisian_Jewish @ 4.647168
7 50% English_Kent_GBR +25% SephardiJewTurkey +25% Shaigi_WGA @ 4.662034
8 50% Orcadian +25% SephardiJewTurkey +25% Shaigi_WGA @ 4.687103
9 50% Orcadian +25% Italian_Jewish +25% Shaigi_WGA @ 4.692261
10 50% English_Kent_GBR +25% Algerian +25% Tunisian_Jewish @ 4.71578
11 50% English_Kent_GBR +25% Tunisian +25% Tunisian_Jewish @ 4.717354
12 50% English_Kent_GBR +25% Bulgarian_Jewish +25% Shaigi_WGA @ 4.723336
13 50% Polish_East +25% Shaigi_WGA +25% Tunisian_Jewish @ 4.723678
14 50% Orcadian +25% Tunisian +25% Tunisian_Jewish @ 4.730753
15 50% Swedish +25% SephardiJewTurkey +25% Shaigi_WGA @ 4.734174
16 50% Orcadian +25% Libyan_Jew +25% Shaigi_WGA @ 4.737775
17 50% English_Kent_GBR +25% Libyan_Jew +25% Shaigi_WGA @ 4.738061
18 50% Scottish_Argyll_Bute_GBR +25% Shaigi_WGA +25% Tunisian_Jewish @ 4.741098
19 50% Icelandic +25% Tunisian +25% Tunisian_Jewish @ 4.743442
Now, the most intriguing part (nMonte2 results):
Code:
[1] "Ncycles= 1000"
Amerindian Ancestor Steppe Indian Arctic
kikk 0.00650000 0.0000000 0.14430000 0.00050000 0.00000000
fitted 0.00505615 0.0019352 0.14238905 0.00361445 0.00249015
dif -0.00144385 0.0019352 -0.00191095 0.00311445 0.00249015
Australian Caucasian EastAfrican NorthEastEuropean
kikk 0.0000000 0.2053000 0.0352000 0.1758000
fitted 0.0026998 0.2033645 0.0331972 0.1736729
dif 0.0026998 -0.0019355 -0.0020028 -0.0021271
NearEast Neolithic NorthAfrican Oceanic Siberian
kikk 0.07530000 0.2207000 0.1137000 0.00630000 0.0000000
fitted 0.07349245 0.2190871 0.1118342 0.00479935 0.0043526
dif -0.00180755 -0.0016129 -0.0018658 -0.00150065 0.0043526
SouthEastAsian Subsaharian
kikk 0.00000000 0.01640000
fitted 0.00280595 0.01524235
dif 0.00280595 -0.00115765
[1] "distance%=0.9204 / distance=0.009204"
kikk
"Orcadian"15.6
"Tunisian_Jewish"12
"Ukrainian_West"11.25
"English_Kent_GBR"7.95
"Spanish_Canarias_IBS"7.1
"Polish_East"6.2
"Burbur_WGA"5.6
"Mozabite"5.2
"Lithuanian"4.05
"Spaniards"3.4
"BedouinB"3.25
"Yemenite_Jew"2.6
"Shaigi_WGA"2.45
"Ethiopian_Jew"2.35
"Italy_Abruzzo"1.65
"Somali"1.4
"Libyan_Jew"1.3
"Spanish_Extremadura_IBS"0.75
"Bulgarians"0.7
"Croatian"0.7
"Italian_Jewish"0.7
"Afar_WGA"0.6
"Macedonians"0.5
"Saharawi"0.5
"Croat-Croatia"0.3
"Icelandic"0.25
"Italian_Bergamo"0.25
"Kurd_WGA"0.2
"Montenegrian"0.2
"Kosovar"0.15
"Swedish"0.15
"SephardiJewTurkey"0.1
"Sorb"0.1
"Spanish_Andalucia_IBS"0.1
"Corsican"0.05
"French"0.05
"Italian_Tuscan"0.05
"Maltese"0.05
"Moroccan_Jew"0.05
"Portuguese"0.05
"Serbian_BH"0.05
"Sicilian"0.05
nMonte2 restricted
Code:
[1] "Ncycles= 1000"
Amerindian Ancestor Steppe Indian Arctic
kikk 0.0065000 0.0000000 0.1443000 0.00050000 0.00000000
fitted 0.0049708 0.0016113 0.1426526 0.00333625 0.00191365
dif -0.0015292 0.0016113 -0.0016474 0.00283625 0.00191365
Australian Caucasian EastAfrican NorthEastEuropean
kikk 0.0000000 0.20530000 0.03520000 0.1758000
fitted 0.0025513 0.20353755 0.03340935 0.1737569
dif 0.0025513 -0.00176245 -0.00179065 -0.0020431
NearEast Neolithic NorthAfrican Oceanic Siberian
kikk 0.07530000 0.22070000 0.11370000 0.00630000 0.0000000
fitted 0.07343645 0.21906095 0.11188645 0.00522775 0.0044359
dif -0.00186355 -0.00163905 -0.00181355 -0.00107225 0.0044359
SouthEastAsian Subsaharian
kikk 0.00000000 0.01640000
fitted 0.00311585 0.01510245
dif 0.00311585 -0.00129755
[1] "distance%=0.8833 / distance=0.008833"
kikk
"Tunisian_Jewish"19.65
"Ukrainian_West"18.7
"Orcadian"18.35
"Spanish_Canarias_IBS"11.1
"English_Kent_GBR"8.3
"Mozabite"5.8
"Burbur_WGA"4.85
"BedouinB"4.2
"Somali"3
"Lithuanian"2.25
"Ethiopian_Jew"1.4
"Shaigi_WGA"1.15
"Spaniards"0.9
"Yemenite_Jew"0.35
"Italy_Abruzzo"0
"Libyan_Jew"0
"Polish_East"0
Given these results, it is safe to make assumption that your father could be a mix between eastern and western Europeans (which is not so untypical for Americans). You score unusually high in Ukrainian_West/Lithuanian (18.7+8.3%) categories and that could theoretically imply ancestry from eastern Europe (circa 25%). Together with western European part of your ancestry (English_Kent + Orcadian) it would make a half of your ancestry (circa 50%). The rest known part of admixture - on your mom's side - is so obvious that it is not so necessary to reflect upon it.
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