Eurogenes K13 PCA with users

[Lucas]

Karol.Klacansky asked me about doing Eurogenes K13 PCA (for Europe & MENA) with his results. I decided to make it publicly. If somebody want to add write your results.

[Hadouken]

which K13 ? eurogenes ?

[Lucas]

Yes Eurogenes

[Hadouken]

thanks for your efforts

here my results

(I dont know if you ned the oracle and population stuff too . in case you do I post them)


Admix Results (sorted):

# Population Percent

1 West_Asian 36.07
2 East_Med 30.76
3 West_Med 8.28
4 South_Asian 6.82
5 Red_Sea 6.05
6 North_Atlantic 4.62
7 Baltic 2.78
8 Siberian 1.29
9 Sub-Saharan 1.28
10 East_Asian 1.21
11 Amerindian 0.84

Single Population Sharing:

# Population (source) Distance

1 Azeri 4.04
2 Kurdish 4.85
3 Iranian 6.24
4 Armenian 7.52
5 Turkish 7.58
6 Georgian_Jewish 7.92
7 Assyrian 9.87
8 Iranian_Jewish 12.29
9 Kurdish_Jewish 12.78
10 Kumyk 15.64
11 Lebanese_Muslim 15.99
12 Georgian 17
13 Turkmen 17.02
14 Syrian 17.05
15 Adygei 18.25
16 Abhkasian 18.48
17 Balkar 19.41
18 Ossetian 19.83
19 Cyprian 20.28
20 Kabardin 20.68

Mixed Mode Population Sharing:

# Primary Population (source) Secondary Population (source) Distance

1 86.2% Kurdish + 13.8% Algerian_Jewish @ 1.93
2 85.3% Kurdish + 14.7% Sephardic_Jewish @ 2.02
3 85.6% Kurdish + 14.4% Tunisian_Jewish @ 2.09
4 86.5% Kurdish + 13.5% Italian_Jewish @ 2.13
5 67.9% Azeri + 32.1% Armenian @ 2.17
6 86.1% Kurdish + 13.9% Libyan_Jewish @ 2.22
7 89.8% Kurdish + 10.2% Tunisian @ 2.25
8 82.5% Kurdish + 17.5% Cyprian @ 2.28
9 90.2% Kurdish + 9.8% Algerian @ 2.4
10 85.8% Kurdish + 14.2% South_Italian @ 2.41
11 90.5% Kurdish + 9.5% Mozabite_Berber @ 2.42
12 63.1% Kurdish + 36.9% Turkish @ 2.45
13 86.7% Kurdish + 13.3% Ashkenazi @ 2.46
14 79.1% Kurdish + 20.9% Lebanese_Muslim @ 2.47
15 70.3% Azeri + 29.7% Georgian_Jewish @ 2.5
16 80.4% Kurdish + 19.6% Syrian @ 2.58
17 86.4% Kurdish + 13.6% East_Sicilian @ 2.63
18 90.8% Kurdish + 9.2% Moroccan @ 2.63
19 88% Kurdish + 12% West_Sicilian @ 2.65
20 55.8% Iranian + 44.2% Turkish @ 2.74


Using 2 populations approximation:

1 50% Kurdish +50% Turkish @ 2.958184


Using 3 populations approximation:

1 50% Azeri +25% Georgian_Jewish +25% Kurdish @ 2.185565


Using 4 populations approximation:
++++++++++++++++++++++++++++++++++++++++++++++++++ +++

1 Armenian + Azeri + Azeri + Iranian @ 1.773698
2 Armenian + Iranian + Iranian + Turkish @ 1.782778
3 Armenian + Azeri + Iranian + Turkish @ 1.818801
4 Armenian + Iranian + Kurdish + Turkish @ 1.892237
5 Assyrian + Azeri + Azeri + Kurdish @ 2.045625
6 Armenian + Azeri + Azeri + Kurdish @ 2.058843
7 Azeri + Azeri + Georgian_Jewish + Kurdish @ 2.185565
8 Lebanese_Druze + Lebanese_Druze + Makrani + Ossetian @ 2.210294
9 Armenian + Azeri + Azeri + Azeri @ 2.228114
10 Georgian_Jewish + Iranian + Kurdish + Turkish @ 2.234008
11 Assyrian + Iranian + Kurdish + Turkish @ 2.295723
12 Abhkasian + Iranian + Iranian + Tunisian_Jewish @ 2.307506
13 Assyrian + Kurdish + Kurdish + Turkish @ 2.356586
14 Iranian + Iranian + Lebanese_Druze + Ossetian @ 2.395164
15 Armenian + Armenian + Kurdish_Jewish + Tadjik @ 2.399478
16 Armenian + Georgian_Jewish + Kurdish_Jewish + Tadjik @ 2.415150
17 Azeri + Georgian_Jewish + Iranian + Turkish @ 2.428787
18 Armenian + Armenian + Iranian_Jewish + Tadjik @ 2.435643
19 Georgian_Jewish + Kurdish + Kurdish + Turkish @ 2.436239
20 Armenian + Azeri + Kurdish + Turkish @ 2.437537

[Kelmendasi]

Could you plot me on it as well please?

My results:
# Population Percent
1 West_Med 24.43
2 East_Med 24.38
3 Baltic 20.62
4 North_Atlantic 18.38
5 West_Asian 8.43
6 Red_Sea 3.54
7 Oceanian 0.15
8 East_Asian 0.09

Single Population Sharing:

# Population (source) Distance
1 Greek_Thessaly 6.2
2 Bulgarian 8.82
3 Romanian 11.01
4 Central_Greek 12.15
5 Tuscan 12.16
6 West_Sicilian 12.81
7 East_Sicilian 13.02
8 Italian_Abruzzo 13.35
9 Ashkenazi 14.52
10 Serbian 14.53
11 North_Italian 14.59
12 South_Italian 15.81
13 Moldavian 19.57
14 Algerian_Jewish 20.08
15 Italian_Jewish 20.69
16 Sephardic_Jewish 21.42
17 Portuguese 21.98
18 Croatian 22.25
19 Spanish_Extremadura 22.43
20 Hungarian 22.58

Mixed Mode Population Sharing:

# Primary Population (source) Secondary Population (source) Distance
1 80.9% Bulgarian + 19.1% Sardinian @ 5.04
2 91.1% Greek_Thessaly + 8.9% Ukrainian @ 5.52
3 92.4% Greek_Thessaly + 7.6% Estonian_Polish @ 5.52
4 93.4% Greek_Thessaly + 6.6% Lithuanian @ 5.54
5 88.8% Greek_Thessaly + 11.2% Croatian @ 5.57
6 92.9% Greek_Thessaly + 7.1% Belorussian @ 5.59
7 92.4% Greek_Thessaly + 7.6% Polish @ 5.6
8 92.8% Greek_Thessaly + 7.2% Russian_Smolensk @ 5.6
9 91.3% Greek_Thessaly + 8.7% Ukrainian_Lviv @ 5.6
10 92.6% Greek_Thessaly + 7.4% Southwest_Russian @ 5.64
11 93.9% Greek_Thessaly + 6.1% Estonian @ 5.65
12 88% Greek_Thessaly + 12% Moldavian @ 5.65
13 92% Greek_Thessaly + 8% South_Polish @ 5.66
14 93.5% Greek_Thessaly + 6.5% Kargopol_Russian @ 5.68
15 92.6% Greek_Thessaly + 7.4% Sardinian @ 5.7
16 93.8% Greek_Thessaly + 6.2% Erzya @ 5.7
17 93.1% Greek_Thessaly + 6.9% Ukrainian_Belgorod @ 5.71
18 73.7% Greek_Thessaly + 26.3% Bulgarian @ 5.72
19 94.5% Greek_Thessaly + 5.5% East_Finnish @ 5.75
20 94.8% Greek_Thessaly + 5.2% Finnish @ 5.81

[Lucas]

thanks for your efforts

here my results

(I dont know if you ned the oracle and population stuff too . in case you do I post them)


Admix Results (sorted):

# Population Percent

1 West_Asian 36.07
2 East_Med 30.76
3 West_Med 8.28
4 South_Asian 6.82
5 Red_Sea 6.05
6 North_Atlantic 4.62
7 Baltic 2.78
8 Siberian 1.29
9 Sub-Saharan 1.28
10 East_Asian 1.21
11 Amerindian 0.84

Only this. Best if it was taken from first site of result, not oracle because ordering is different.

[Hadouken]

Only this. Best if it was taken from first site of result, not oracle because ordering is different.

thank you !

[Lucas]

With Kelmendasi

[Kelmendasi]

With Kelmendasi

Thanks

[Karol Klačansky]

I don't understand PCA plots exactly, why do I look so distant from populations that are listed as closest to me. The east German makes sense but my second closest population is south Polish but it seems really far from me

Using 1 population approximation:
1 East_German @ 8.596087
2 South_Polish @ 8.699465
3 Hungarian @ 10.036150
4 Austrian @ 10.831338
5 Polish @ 11.011834
6 Southwest_Finnish @ 11.235279
7 Ukrainian @ 11.254989
8 Ukrainian_Lviv @ 11.533505
9 Croatian @ 11.708292
10 North_Swedish @ 12.414757
11 Belorussian @ 14.338272
12 Estonian_Polish @ 14.669163
13 Russian_Smolensk @ 14.709253
14 Southwest_Russian @ 15.238096
15 Finnish @ 15.606089
16 Moldavian @ 15.725510
17 Estonian @ 15.991500
18 Ukrainian_Belgorod @ 16.253641
19 Swedish @ 16.545988
20 North_German @ 17.119804

Using 2 populations approximation:
1 50% Belorussian +50% West_German @ 5.046282


Using 3 populations approximation:
1 50% Belorussian +25% Southwest_Finnish +25% Spanish_Valencia @ 3.581734


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