qpAdm runs in admixtools2 for Northwest/Northeast Europe

**Russki** · 08-06-2023, 12:07 AM

Code:

target = c()
left = c('Russia_Samara_EBA_Yamnaya', 'Italy_North_Villabruna_HG', 'Turkey_Barcin_LN.SG', 'Nganasan.HO')
right = c('Mbuti.DG', 'Ethiopia_4500BP.SG', 'Russia_Ust_Ishim.DG', 'Czech_Vestonice16', 'Belgium_UP_GoyetQ116_1', 'Russia_Kostenki14.SG', 'Russia_AfontovaGora3', 'Han.DG', 'Papuan.DG', 'Karitiana.DG', 'Georgia_Satsurblia.SG', 'Iran_GanjDareh_N', 'Turkey_Epipaleolithic', 'Morocco_Iberomaurusian', 'Jordan_PPNB', 'Russia_Karelia_HG.SG', 'Czech_CordedWare', 'Armenia_LBA.SG', 'ONG.SG')
mypops = c('Mbuti.DG', 'Ethiopia_4500BP.SG', 'Russia_Ust_Ishim.DG', 'Czech_Vestonice16', 'Belgium_UP_GoyetQ116_1', 'Russia_Kostenki14.SG', 'Russia_AfontovaGora3', 'Italy_North_Villabruna_HG', 'Han.DG', 'Papuan.DG', 'Karitiana.DG', 'Georgia_Satsurblia.SG', 'Iran_GanjDareh_N',  'Turkey_Epipaleolithic', 'Morocco_Iberomaurusian', 'Jordan_PPNB', 'Russia_Karelia_HG.SG', 'Russia_Samara_EBA_Yamnaya', 'Czech_CordedWare', 'Armenia_LBA.SG', 'ONG.SG', 'Turkey_Barcin_LN.SG', 'Nganasan.HO')
results = qpadm(prefix, left, right, target, allsnps = TRUE)
results$weights
results$popdrop

Belarusian.HO
52.2% Russia_Samara_EBA_Yamnaya
11.7% Italy_North_Villabruna_HG
31.5% Turkey_Barcin_LN.SG
4.67% Nganasan.HO

Russian_Smolensk.HO
54.6% Russia_Samara_EBA_Yamnaya
9.6% Italy_North_Villabruna_HG
31.3% Turkey_Barcin_LN.SG
4.42% Nganasan.HO

Czech.HO
51% Russia_Samara_EBA_Yamnaya
9.25% Italy_North_Villabruna_HG
36.8% Turkey_Barcin_LN.SG
2.92% Nganasan.HO

English.HO
45.8% Russia_Samara_EBA_Yamnaya
15.3% Italy_North_Villabruna_HG
37.3% Turkey_Barcin_LN.SG
1.69% Nganasan.HO

Estonian.HO
53.4% Russia_Samara_EBA_Yamnaya
17.3% Italy_North_Villabruna_HG
24.5% Turkey_Barcin_LN.SG
4.89% Nganasan.HO

Finnish
52.6% Russia_Samara_EBA_Yamnaya
15.8% Italy_North_Villabruna_HG
21.8% Turkey_Barcin_LN.SG
9.85% Nganasan.HO

Hungarian.HO
45.1% Russia_Samara_EBA_Yamnaya
9.86% Italy_North_Villabruna_HG
40.8% Turkey_Barcin_LN.SG
4.18% Nganasan.HO

Icelandic.HO
50.9% Russia_Samara_EBA_Yamnaya
14.7% Italy_North_Villabruna_HG
32.2% Turkey_Barcin_LN.SG
2.22% Nganasan.HO

Karelian.HO
49.8% Russia_Samara_EBA_Yamnaya
17.3% Italy_North_Villabruna_HG
21.6% Turkey_Barcin_LN.SG
11.2% Nganasan.HO

Lithuanian.HO
56.4% Russia_Samara_EBA_Yamnaya
17.4% Italy_North_Villabruna_HG
23.6% Turkey_Barcin_LN.SG
2.61% Nganasan.HO

Mordovian.HO
53.5% Russia_Samara_EBA_Yamnaya
9.83% Italy_North_Villabruna_HG
26% Turkey_Barcin_LN.SG
10.6% Nganasan.HO

Norwegian.HO
51.6% Russia_Samara_EBA_Yamnaya
12% Italy_North_Villabruna_HG
33.5% Turkey_Barcin_LN.SG
2.93% Nganasan.HO

Orcadian.DG
51% Russia_Samara_EBA_Yamnaya
11.9% Italy_North_Villabruna_HG
34.8% Turkey_Barcin_LN.SG
2.29% Nganasan.HO

Russian_Arkhangelsk_HGDP.DG
52.3% Russia_Samara_EBA_Yamnaya
12.7% Italy_North_Villabruna_HG
23.8% Turkey_Barcin_LN.SG
11.2% Nganasan.HO

Russian_Arkhangelsk_Krasnoborsky.HO
47.8% Russia_Samara_EBA_Yamnaya
14% Italy_North_Villabruna_HG
25.9% Turkey_Barcin_LN.SG
12.3% Nganasan.HO

Russian_Arkhangelsk_Leshukonsky.HO
50.7% Russia_Samara_EBA_Yamnaya
14.8% Italy_North_Villabruna_HG
17.5% Turkey_Barcin_LN.SG
17% Nganasan.HO

Russian_Arkhangelsk_Pinezhsky.HO
52.1% Russia_Samara_EBA_Yamnaya
14% Italy_North_Villabruna_HG
19.6% Turkey_Barcin_LN.SG
14.3% Nganasan.HO

Russian_Kaluga.HO
53.7% Russia_Samara_EBA_Yamnaya
15.2% Italy_North_Villabruna_HG
27.1% Turkey_Barcin_LN.SG
4.05% Nganasan.HO

Russian_Kostroma.HO
53.1% Russia_Samara_EBA_Yamnaya
10.5% Italy_North_Villabruna_HG
29.6% Turkey_Barcin_LN.SG
6.87% Nganasan.HO

Russian_Kursk.HO
51.3% Russia_Samara_EBA_Yamnaya
13.7% Italy_North_Villabruna_HG
29.7% Turkey_Barcin_LN.SG
5.31% Nganasan.HO

Russian_Orel.HO
49.6% Russia_Samara_EBA_Yamnaya
12.7% Italy_North_Villabruna_HG
32.2% Turkey_Barcin_LN.SG
5.54% Nganasan.HO

Russian_Pskov.HO
51.3% Russia_Samara_EBA_Yamnaya
15.7% Italy_North_Villabruna_HG
28.4% Turkey_Barcin_LN.SG
4.6% Nganasan.HO

Russian_Ryazan.HO
51.8% Russia_Samara_EBA_Yamnaya
11.9% Italy_North_Villabruna_HG
29.7% Turkey_Barcin_LN.SG
6.66% Nganasan.HO

Scottish.HO
54.6% Russia_Samara_EBA_Yamnaya
8.64% Italy_North_Villabruna_HG
34.6% Turkey_Barcin_LN.SG
2.17% Nganasan.HO

Ukrainian.HO
50.2% Russia_Samara_EBA_Yamnaya
12.2% Italy_North_Villabruna_HG
33.2% Turkey_Barcin_LN.SG
4.41% Nganasan.HO

Russian_Belgorod.HO
50.1% Russia_Samara_EBA_Yamnaya
13.5% Italy_North_Villabruna_HG
31.9% Turkey_Barcin_LN.SG
4.54% Nganasan.HO

Veps.HO
51% Russia_Samara_EBA_Yamnaya
16.1% Italy_North_Villabruna_HG
20.4% Turkey_Barcin_LN.SG
12.5% Nganasan.HO

The results I received are very similar to this peer-reviewed study, although not exactly identical and they used LBK instead of proper ANF.

**ugochaves** · 08-06-2023, 05:00 AM

Originally Posted by Russki

The results I received are very similar to this peer-reviewed study, although not exactly identical and they used LBK instead of proper ANF.

All Europeans have an admixture of East Asia. Among Hungarians, it is clearly visible in these calculators. If everyone learns this, many interesting calculators will appear on the forum.

**ugochaves** · 08-06-2023, 06:19 AM

Spanish.HO
30.8% Russia_Samara_EBA_Yamnaya
9.6% Italy_North_Villabruna_HG
56.2% Turkey_Barcin_LN.SG
3.4% Nganasan.HO

**Grace O'Malley** · 08-06-2023, 06:23 AM

Can you do Irish?

Thanks

**ugochaves** · 08-06-2023, 06:35 AM

Originally Posted by Grace O'Malley

Can you do Irish?

Thanks

I can't find the Irish in the database. And there are no Swedes either. Perhaps Russki knows?

**Grace O'Malley** · 08-06-2023, 06:58 AM

Originally Posted by ugochaves

I can't find the Irish in the database. And there are no Swedes either. Perhaps Russki knows?

No problems. That's most probably the reason why Russki didn't run them.

**ugochaves** · 08-06-2023, 07:02 AM

We need to add SSA

Spanish.HO
31.8% Russia_Samara_EBA_Yamnaya
10.6% Italy_North_Villabruna_HG
53.2% Turkey_Barcin_LN.SG
3.1% Nganasan.HO
1.2% Yoruba

Belarusian.HO
52.1% Russia_Samara_EBA_Yamnaya
11.6% Italy_North_Villabruna_HG
31.3% Turkey_Barcin_LN.SG
4.6% Nganasan.HO
0.4% Yoruba.HO

**Ibericus** · 08-06-2023, 12:16 PM

Basques can you do ? i want to see the Whg levels

**Gallop** · 08-06-2023, 12:19 PM

Originally Posted by ugochaves

We need to add SSA

Spanish.HO
31.8% Russia_Samara_EBA_Yamnaya
10.6% Italy_North_Villabruna_HG
53.2% Turkey_Barcin_LN.SG
3.1% Nganasan.HO
1.2% Yoruba

Belarusian.HO
52.1% Russia_Samara_EBA_Yamnaya
11.6% Italy_North_Villabruna_HG
31.3% Turkey_Barcin_LN.SG
4.6% Nganasan.HO
0.4% Yoruba.HO

It's amazing how an investment in two components makes the difference between being on top of the world and leaving a mark on humanity forever and going completely unnoticed.

**Russki** · 08-06-2023, 12:32 PM

Originally Posted by Ibericus

Basques can you do ? i want to see the Whg levels

I'm not quite sure yet how to model South Europe.

There were Neolithic Farmers with more East Eurasian affinity than Barcin_LN.SG.

If I apply the same model to South Europe, a lot of people will be protesting that South Europeans can't have these levels of East Eurasian admixture.