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I've read tons of Ainu history. One must remember that it was the Japanese who conquered Jomon of North Japan 1500 years ago and than the Hokkaido of Ainu in 1868. It was the Japanese who called them " hairy barbarians". So it's possible that the Japanese who conquered the Ainu later become Samurai however it also claimed that Samurai started only around 700 AD.
Supporting a Jomon origin.
American anthropologist claimed that ancient Samurai were Jomon
http://www.science-frontiers.com/sf065/sf065a01.htm
Findings by American anthropologist C. Loring Brace, University of Michigan, will surely be controversial in race conscious Japan. The eye of the predicted storm will be the Ainu, a "racially different" group of some 18,000 people now living on the northern island of Hokkaido. Pure-blooded Ainu are easy to spot: they have lighter skin, more body hair, and higher-bridged noses than most Japanese. Most Japanese tend to look down on the Ainu.
Brace has studied the skeletons of about 1,100 Japanese, Ainu, and other Asian ethnic groups and has concluded that the revered samurai of Japan are actually descendants of the Ainu, not of the Yayoi from whom most modern Japanese are descended. In fact, Brace threw more fuel on the fire with:
"Dr. Brace said this interpretation also explains why the facial features of the Japanese ruling class are so often unlike those of typical modern Japanese. The Ainu-related samurai achieved such power and prestige in medieval Japan that they intermarried with royality and nobility, passing on Jomon-Ainu blood in the upper classes, while other Japanese were primarily descended from the Yoyoi."
The reactions of Japanese scientists have been muted so. One Japanese anthropologist did say to Brace," I hope you are wrong."
The Ainu and their origin have always been rather mysterious, with some people claiming that the Ainu are really Caucasian or proto-Caucasian - in other words, "white." At present, Brace's study denies this interpretation.
(Wilford, John Noble; "Exalted Warriors, Humble Roots," New York Times, June 6, 1989. Cr. J. Covey.)
Supporting a Yayoi origin
http://en.wikipedia.org/wiki/Samurai
Wikipedia claimed the Idea of Samurai started only around 700 AD.
Following the Battle of Hakusukinoe against Tang China and Silla in 663 AD that led to a Japanese retreat from Korean affairs, Japan underwent widespread reform. One of the most important was that of the Taika Reform, issued by Prince Naka no Ōe (Emperor Tenji) in 646 AD. This edict allowed the Japanese aristocracy to adopt the Tang Dynasty political structure, bureaucracy, culture, religion, and philosophy.[3] As part of the Taihō Code, of 702 AD, and the later Yōrō Code,[4] the population was required to report regularly for census, a precursor for national conscription. With an understanding of how the population was distributed, Emperor Mommu introduced a law whereby 1 in 3–4 adult males was drafted into the national military. These soldiers were required to supply their own weapons, and in return were exempted from duties and taxes.[3] This was one of the first attempts by the Imperial government to form an organized army modeled after the Chinese system. It was called "Gundan-Sei" (軍団制) by later historians and is believed to have been short-lived.[citation needed]
ALSO
The Ainu race (Aino jinshu) is an inferior race, while our Japanese race (naichi jinshu) is a superior race. The superior race say that the inferior Ainu race will naturally die out
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