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curupira
09-28-2016, 11:19 PM
M897077 I0707 Anatolian EF

EUtest Oracle results:


Kit M897077

Admix Results (sorted):

#PopulationPercent
1WEST_MED46.98
2EAST_MED32.62
3MIDDLE_EASTERN10.57
4ATLANTIC9.59
5NORTH-CENTRAL_EURO0.21
6EAST_AFRICAN0.03

Single Population Sharing:

#Population (source)Distance
1Sardinian19.83
2South_Italian_&_Sicilian30.51
3Tuscan31.43
4GR31.65
5North_Italian33.52
6Moroccan33.96
7AJ34.13
8PT36.5
9ES36.7
10Algerian38.39
11Samaritan39.07
12Mozabite_Berber40.98
13RO41.39
14FR43.19
15Druze43.37
16Serbian44.14
17TR44.62
18French_Basque45.13
19Armenian45.38
20Assyrian45.63

Mixed Mode Population Sharing:

# Primary Population (source)Secondary Population (source)Distance
1 68.8%Sardinian+31.2%Samaritan@9.92
2 71.2%Sardinian+28.8%Druze@10.05
3 75.2%Sardinian+24.8%Mandean@12.97
4 74.5%Sardinian+25.5%IQ@13.03
5 74.8%Sardinian+25.2%Assyrian@13.35
6 80.3%Sardinian+19.7%Bedouin@13.9
7 67.3%Sardinian+32.7%GR@14.35
8 76.2%Sardinian+23.8%Armenian@14.57
9 66.8%Sardinian+33.2%South_Italian_&_Sicilian@14.72
10 78.8%Sardinian+21.2%Kurdish@15
11 70.5%Sardinian+29.5%AJ@15.16
12 79.7%Sardinian+20.3%IR@15.35
13 77%Sardinian+23%TR@15.38
14 75.9%Sardinian+24.1%Algerian@16.51
15 85.3%Sardinian+14.7%GE@17.28
16 75.9%Sardinian+24.1%Moroccan@17.54
17 73.9%Sardinian+26.1%Tuscan@17.55
18 87.2%Sardinian+12.8%Brahui@17.73
19 87.5%Sardinian+12.5%Balochi@17.83
20 82%Sardinian+18%Mozabite_Berber@18.12

Eurogenes_ANE K7 Admixture Proportions


Population
ANE-
ASE-
WHG-UHG36.44%
East_Eurasian-
West_African-
East_African-
ENF63.53%

Dodecad K12b Oracle results:


Kit M897077

Admix Results (sorted):

#PopulationPercent
1Atlantic_Med48.5
2Caucasus37.07
3Southwest_Asian12.16
4Northwest_African2.24
5Southeast_Asian0.03

Single Population Sharing:

#Population (source)Distance
1Sicilian (Dodecad)20.91
2S_Italian_Sicilian (Dodecad)21.09
3C_Italian (Dodecad)21.4
4Tuscan (HGDP)21.73
5TSI30 (Metspalu)22.27
6Morocco_Jews (Behar)22.5
7Sephardic_Jews (Behar)22.58
8Ashkenazi (Dodecad)24.51
9North_Italian (HGDP)25.24
10Ashkenazy_Jews (Behar)25.26
11Sardinian (HGDP)25.79
12O_Italian (Dodecad)26.53
13Greek (Dodecad)26.91
14N_Italian (Dodecad)27.31
15Andalucia (1000Genomes)29.51
16Cypriots (Behar)29.54
17Baleares (1000Genomes)30.29
18Murcia (1000Genomes)30.41
19Canarias (1000Genomes)31
20Galicia (1000Genomes)32.55

Mixed Mode Population Sharing:

# Primary Population (source)Secondary Population (source)Distance
1 53.5%Sardinian (HGDP)+46.5%Cypriots (Behar)@4.29
2 59.7%Sardinian (HGDP)+40.3%Druze (HGDP)@5.48
3 62.2%Sardinian (HGDP)+37.8%Samaritians (Behar)@6.26
4 62.8%Sardinian (HGDP)+37.2%Armenian (Dodecad)@7.19
5 63.7%Sardinian (HGDP)+36.3%Georgia_Jews (Behar)@7.37
6 63.8%Sardinian (HGDP)+36.2%Armenians (Behar)@7.38
7 63%Sardinian (HGDP)+37%Assyrian (Dodecad)@7.58
8 63.7%Sardinian (HGDP)+36.3%Armenians_15 (Yunusbayev)@7.62
9 63.3%Sardinian (HGDP)+36.7%Azerbaijan_Jews (Behar)@7.79
10 53.7%Sephardic_Jews (Behar)+46.3%Sardinian (HGDP)@7.88
11 63.2%Sardinian (HGDP)+36.8%Iraq_Jews (Behar)@7.96
12 64.4%Sardinian (HGDP)+35.6%Iranian_Jews (Behar)@8.17
13 60.2%Sardinian (HGDP)+39.8%Lebanese (Behar)@8.51
14 71%Sardinian (HGDP)+29%Georgians (Behar)@9.3
15 51.5%Ashkenazi (Dodecad)+48.5%Sardinian (HGDP)@9.3
16 50.6%Ashkenazy_Jews (Behar)+49.4%Sardinian (HGDP)@9.33
17 60.2%Sardinian (HGDP)+39.8%Turkish (Dodecad)@9.35
18 61.4%Sardinian (HGDP)+38.6%Syrians (Behar)@9.61
19 70.6%Sardinian (HGDP)+29.4%Abhkasians (Yunusbayev)@9.62
20 64%Sardinian (HGDP)+36%Uzbekistan_Jews (Behar)@9.62


Eurasia K14 Neolithic Oracle results:


Kit M897077

Admix Results (sorted):

#PopulationPercent
1Early_European_Farmers39.52
2Neolithic_Balkan_Farmers32.18
3SW_Asian24.72
4E_African1.94
5Kalash1
6SHG_WHG0.59
7Siberian0.04
8Papuan0.02
9SE_Asian0.01

Single Population Sharing:

#Population (source)Distance
1Stuttgart17.06
2Hungarian_BA517.42
3Hungarian_BA322.98
4Hungarian_BA226.2
5Corded_Ware_BA327.54
6LBK_EN127.65
7LBK_EN228.68
8Bell_Beaker_LN429.9
9HungaryGamba_BA130.92
10Hungarian_BA731.67
11HungaryGamba_IA36.86
12Bell_Beaker_LN240.31
13HungaryGamba_EN140.44
14Nordic_BA140.58
15Bell_Beaker_LN342.22
16Hungarian_BA142.24
17HungaryGamba_EN242.29
18Bell_Beaker_BA143.32
19Hungarian_BA843.44
20Hungarian_BA445.24

Mixed Mode Population Sharing:

# Primary Population (source)Secondary Population (source)Distance
1 74.1%LBK_EN1+25.9%BedouinB@3.8
2 73.8%LBK_EN2+26.2%BedouinB@7.77
3 83.7%Stuttgart+16.3%BedouinB@7.79
4 76%Hungarian_BA2+24%BedouinB@9.23
5 75%Stuttgart+25%Hungarian_BA1@10.22
6 60.4%Stuttgart+39.6%Hungarian_BA3@10.54
7 83%Stuttgart+17%Armenian_BA1@11.51
8 68.2%Hungarian_BA3+31.8%HungaryGamba_EN2@13.25
9 81.6%Stuttgart+18.4%Armenian_BA2@13.31
10 87.4%Hungarian_BA5+12.6%BedouinB@13.4
11 67.5%Hungarian_BA3+32.5%HungaryGamba_EN1@13.92
12 62.5%LBK_EN1+37.5%Hungarian_BA1@13.95
13 71.9%LBK_EN1+28.1%Armenian_BA1@14.01
14 80.2%Hungarian_BA5+19.8%Hungarian_BA1@14.39
15 61.5%LBK_EN2+38.5%Hungarian_BA1@14.39
16 58.1%Hungarian_BA3+41.9%LBK_EN2@14.42
17 64.7%Hungarian_BA5+35.3%Hungarian_BA3@14.45
18 80.8%Stuttgart+19.2%Nordic_BA1@14.48
19 79.1%Stuttgart+20.9%HungaryGamba_IA@14.52
20 81.2%Hungarian_BA3+18.8%HungaryGamba_EN@14.6

Eurogenes k13 results:


Eurogenes K13 Oracle results:

K13 Oracle ref data revised 21 Nov 2013

Kit M897077

Admix Results (sorted):

#PopulationPercent
1West_Med48.34
2East_Med40.08
3North_Atlantic7.72
4Red_Sea3.87

Single Population Sharing:

#Population (source)Distance
1Sardinian20.71
2Algerian_Jewish25.83
3Italian_Jewish27.53
4South_Italian29.01
5Sephardic_Jewish29.53
6Libyan_Jewish29.87
7Tunisian_Jewish29.97
8West_Sicilian30.07
9East_Sicilian30.74
10Ashkenazi31.03
11Tunisian31.43
12Cyprian31.55
13Central_Greek31.63
14Moroccan32.06
15Algerian32.5
16Mozabite_Berber32.55
17Tuscan32.99
18Italian_Abruzzo33.8
19Greek_Thessaly34.6
20Samaritan34.99

Mixed Mode Population Sharing:

# Primary Population (source)Secondary Population (source)Distance
1 69.7%Sardinian+30.3%Lebanese_Christian@14.68
2 68.5%Sardinian+31.5%Samaritan@14.7
3 76%Sardinian+24%Yemenite_Jewish@15.06
4 72.8%Sardinian+27.2%Lebanese_Druze@15.53
5 67%Sardinian+33%Cyprian@15.73
6 73.2%Sardinian+26.8%Palestinian@15.99
7 74.1%Sardinian+25.9%Jordanian@16.38
8 61.3%Sardinian+38.7%Algerian_Jewish@16.46
9 66.7%Sardinian+33.3%Tunisian_Jewish@16.5
10 66.6%Sardinian+33.4%Libyan_Jewish@16.5
11 74.3%Sardinian+25.7%Egyptian@16.56
12 79%Sardinian+21%Saudi@16.66
13 75.1%Sardinian+24.9%Bedouin@16.67
14 73.4%Sardinian+26.6%Lebanese_Muslim@16.69
15 77%Sardinian+23%Kurdish_Jewish@16.73
16 77.6%Sardinian+22.4%Iranian_Jewish@16.85
17 74.1%Sardinian+25.9%Syrian@16.85
18 64.6%Sardinian+35.4%Italian_Jewish@16.95
19 78%Sardinian+22%Assyrian@17.21
20 68.2%Sardinian+31.8%Sephardic_Jewish@17.49

Eurogenes K13 4-Ancestors Oracle

K13 Oracle ref data revised 21 Nov 2013

Admix Results (sorted):

#PopulationPercent
1West_Med48.34
2East_Med40.08
3North_Atlantic7.72
4Red_Sea3.87


Finished reading population data. 204 populations found.
13 components mode.

--------------------------------

Least-squares method.

Using 1 population approximation:
1 Sardinian @ 24.058447
2 Algerian_Jewish @ 28.721827
3 Italian_Jewish @ 30.681118
4 South_Italian @ 32.650562
5 Sephardic_Jewish @ 32.961361
6 Libyan_Jewish @ 33.017933
7 Tunisian @ 33.223160
8 Tunisian_Jewish @ 33.240818
9 West_Sicilian @ 33.873314
10 Moroccan @ 34.066624
11 Mozabite_Berber @ 34.244122
12 Algerian @ 34.451580
13 East_Sicilian @ 34.554226
14 Ashkenazi @ 34.630989
15 Cyprian @ 35.447632
16 Central_Greek @ 35.636093
17 Tuscan @ 37.414867
18 Italian_Abruzzo @ 38.160995
19 Greek_Thessaly @ 39.027355
20 Samaritan @ 39.075199

Using 2 populations approximation:
1 50% Samaritan +50% Sardinian @ 19.153318


Using 3 populations approximation:
1 50% Sardinian +25% Sardinian +25% Yemenite_Jewish @ 17.172222


Using 4 populations approximation:
1 Sardinian + Sardinian + Sardinian + Yemenite_Jewish @ 17.172222
2 Lebanese_Christian + Sardinian + Sardinian + Sardinian @ 17.237726
3 Samaritan + Sardinian + Sardinian + Sardinian @ 17.357517
4 Lebanese_Druze + Sardinian + Sardinian + Sardinian @ 17.962492
5 Palestinian + Sardinian + Sardinian + Sardinian @ 18.461313
6 Algerian_Jewish + Samaritan + Sardinian + Sardinian @ 18.612587
7 Cyprian + Sardinian + Sardinian + Sardinian @ 18.632219
8 Algerian_Jewish + Lebanese_Christian + Sardinian + Sardinian @ 18.748333
9 Jordanian + Sardinian + Sardinian + Sardinian @ 18.888723
10 Egyptian + Sardinian + Sardinian + Sardinian @ 18.958664
11 Italian_Jewish + Samaritan + Sardinian + Sardinian @ 19.029833
12 Algerian_Jewish + Cyprian + Sardinian + Sardinian @ 19.106777
13 Lebanese_Christian + Sardinian + Sardinian + Tunisian @ 19.113445
14 Samaritan + Samaritan + Sardinian + Sardinian @ 19.153318
15 Samaritan + Sardinian + Sardinian + Tunisian @ 19.155729
16 Italian_Jewish + Lebanese_Christian + Sardinian + Sardinian @ 19.183189
17 Bedouin + Sardinian + Sardinian + Sardinian @ 19.190241
18 Libyan_Jewish + Samaritan + Sardinian + Sardinian @ 19.200336
19 Cyprian + Samaritan + Sardinian + Sardinian @ 19.209545
20 Sardinian + Sardinian + Sardinian + Saudi @ 19.213182

Done.

Elapsed time 10.1646 seconds.

This is the source of the sample M897077 I0707 Anatolian EF:


Our sample of 26 Anatolian Neolithic individuals represents the first genome-wide ancient
DNA data from the eastern Mediterranean. Our success at analyzing such a large number of samples is
due to the fact that at the Barcın site–the source of 21 of the working samples–we sampled from
the cochlea of the petrous bone9, which has been shown to increase the amount of DNA obtained by up
to two orders of magnitude relative to teeth (the next-most-promising tissue).

Barcın Höyük is located in the Yenişehir Plain in Northwest Turkey, originally on a small
natural elevation at the edge of a retreating lake8. Excavations have demonstrated continuous
occupation between around 6600 calBCE and 6000 calBCE9, producing about 4 meters of
stratified Neolithic settlement deposits. From the start of habitation, animal husbandry and
crop cultivation were the mainstay of this subsistence economy. The deepest levels at Barcın
Höyük represent the oldest known farming community in northwestern Anatolia.
It is important to place the site of Barcın within the context of a broader understanding of the
Neolithization of western and northwestern Anatolia. Ongoing excavations in both regions
now indicate a rather sudden appearance of farming villages around 6700-6600 calBCE10.
This development breached a boundary that had remained in place for more than 1,500 years
between agricultural landscapes in southeastern and central Anatolia to the east and
uninhabited or lightly inhabited forager landscapes to the west.

Excavations at Barcın between 2007 and 2014 yielded large assemblages of human remains,
mostly from primary and single inhumation burials within the settlement2. Infants, juveniles
and adults are all represented. To date, remains of 115 individuals have been excavated (47
adults, 68 non-adults). More than half of the burials belong to infants. DNA was successfully
extracted from 21 samples (15 infants, 1 child, 5 adults). Fourteen of the 21 the skeletons
were osteologically analyzed. The age determination of the infants that were not examined
was estimated by observing bone dimensions when the samples were collected.
The sample numbers and descriptions are given below:

• I0707 / L11-213
This infant is estimated to be about 3 months old based on long bone size and 4-8 months old
based on dentition. The sample is genetically determined to be female.
http://biorxiv.org/content/early/2015/03/13/016477

Taiguaitiaoghyrmmumin
09-28-2016, 11:30 PM
so sardinians are almost basically ancient turks?

wvwvw
09-28-2016, 11:35 PM
These dna results are from last year, nothing new

curupira
09-28-2016, 11:35 PM
so sardinians are almost basically ancient turks?

They are quite similar to Ancient Anatolian farmers, the closest living ethnic group so to say. Sardinians, among all Europeane ethnic groups, also have the lowest amount of Indo European input, next to zero. Neolithic Europeans were very similar overall (a mix of Anatolian/Near Eastern farmer input with Hunter Gatherer ancestry) no matter if they hailed from Spain, Ireland, Sweden, Germany or Hungary.

wvwvw
09-28-2016, 11:39 PM
so sardinians are almost basically ancient turks?

There is no such thing as Ancient Turk stupid.

There is still a large distance @20 between that early farmer sample and a modern Sardinian.

jingorex
09-28-2016, 11:40 PM
You and I are completely unrelated! If you were a woman, id like to mate with you.

Comparing Kit Mxxxxxxx(xxxxAnatolian EF) and Mxxxxxx (*Jingorex)

Minimum threshold size to be included in total = 500 SNPs
Mismatch-bunching Limit = 250 SNPs
Minimum segment cM to be included in total = 7.0 cM

Largest segment = 0.0 cM
Total of segments > 7 cM = 0.0 cM
(2159) No shared DNA segments found

332202 SNPs used for this comparison.

Taiguaitiaoghyrmmumin
09-28-2016, 11:49 PM
There is no such thing as Ancient Turk stupid.

There is still a large distance @20 between that early farmer sample and a modern Sardinian.

LoL omgoodness :cool: xD

Petalpusher
09-29-2016, 01:17 AM
You and I are completely unrelated! If you were a woman, id like to mate with you.

Comparing Kit Mxxxxxxx(xxxxAnatolian EF) and Mxxxxxx (*Jingorex)

Minimum threshold size to be included in total = 500 SNPs
Mismatch-bunching Limit = 250 SNPs
Minimum segment cM to be included in total = 7.0 cM

Largest segment = 0.0 cM
Total of segments > 7 cM = 0.0 cM
(2159) No shared DNA segments found

332202 SNPs used for this comparison.

You need to drop to 1/2cM and 50/100 SNP's to see something significant. "One to one compare" at 7cM/500snp is like for a living 3rd cousin (that a would be a 8000y old one)



Sardinians are more similar to Europe_EN, which is this kind of sample but once it expanded and settled in Europe with additionnal local WHG, and a tad of CHG later for Sardinians. Ancient dna with modern calc is still meh.

Myanthropologies
09-29-2016, 01:26 AM
There is no such thing as Ancient Turk stupid.

There is still a large distance @20 between that early farmer sample and a modern Sardinian.

This. These farmers seem in between modern mena and European populations based on these

Dick
09-29-2016, 01:28 AM
This. These farmers seem in between modern mena and European populations based on these

PRIMARY POP IS CLOSE

Myanthropologies
09-29-2016, 01:34 AM
PRIMARY POP IS CLOSE

Edit

Dick
09-29-2016, 01:35 AM
That distance is like spaniard to british distance. Sardinians may be the closest, but they're clearly different from they're farmers

OK. I WISH I WAS A SARDINIAN. THEIR WOMEN ARE HOT

Petalpusher
09-29-2016, 01:36 AM
They don't fit as anything in between modern pops, they fit between ancient Levant and ancient Euro WHG, that's all. Between modern MENA and Europe (central-SW) is simply southernmost Europe.

Myanthropologies
09-29-2016, 04:03 AM
They don't fit as anything in between modern pops, they fit between ancient Levant and ancient Euro WHG, that's all. Between modern MENA and Europe (central-SW) is simply southernmost Europe.

Southernmost Europeans seem to greatly shift towards menas rather than to central Europeans. I'd say north Italians or mainland Greeks are in between both.

Petalpusher
09-29-2016, 05:27 AM
Southernmost Europeans seem to greatly shift towards menas rather than to central Europeans. I'd say north Italians or mainland Greeks are in between both.

Both wouldn't fit very well as that mainly cause of the lack of SSA, only S.Italy and similar usually trigger this kind of fit. You can imagine all sorts of 2pop approximations in every directions but they have to match the admix to have a meaning in terms of recent ancestry. Also the distance of theses fits are very important, for example the 2pop mixmode in the op have horrible distances, they aren't even much better than the single pop distances. Over @2-3 in mix mode is really not that great, @10 and over, it's terrible. It means the actual point is so far from anything on the line you are tracing it doesn't have any meaning. There is simply no modern populations producing good fits, it still lists the bad ones no matter what.

For N.Italy it could be easier cause we have some samples in the Copper Age from there, that's the chronological reference point, we know exactly what they were just before the steppe era, then you can add probably multiple inputs to find something that could fit historically, If someone invested enough time to toy with nMonte im sure it would be possible to find great fits starting from Remedello CA. So you can fit plenty of things, a 60% Sicilian + 40% English or something could work for example but it has probably no ground other than Bell Beaker shared ancestry and doesn't work with modern MENA whatsoever. We don't have theses points of reference for Greece.

Dick
09-29-2016, 05:44 AM
https://youtu.be/dQw4w9WgXcQ

Bagot
09-29-2016, 01:38 PM
so sardinians are almost basically ancient turks?

Turks didn't even exist at that time in Anatolia.

Ylla
09-29-2016, 01:47 PM
farmer master race:D