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Peterski
11-18-2016, 11:03 AM
Is there some software for "creating" populations with fictional GEDmatch admixture proportions and comparing their similarity to real populations? For example, I'm trying to find a modern (or ancient) population with such or similar admixture proportions in MDLP K23b:

European Hunter-Gatherers = 58-62%
Caucasian = 33-38%
Early European Farmers = 0-4%
South-Central Asian = 0-1%
Ancestral Altaic = 0-1%
all other admixtures = the rest (9-0%)

Do any of modern population averages or ancient samples match (more or less) this profile in MDLP K23b calculator ???

Lucas
11-18-2016, 11:27 AM
It's simple, You add in any statistical program this artifical sample to set of real population averages and do some PCA or other clustering. Programm doesn't know which sample is "artificial" and will group them as usual.
But I must have datasheet with averages for it (like Eurogenes provides).

Petalpusher
11-18-2016, 11:40 AM
4Admix does that, it creates an Oracle for any admix possible.



European Hunter-Gatherers = 58%
Caucasian = 38%
Early European Farmers = 4%
South-Central Asian = 0%
Ancestral Altaic = 0%
all other admixtures = 0%

To keep it simple and 100% based on your example, it produces this in K23b :


Least-squares method.

Using 1 population approximation:
1 Pole @ 8,937809
2 Belarusian_Russian @ 9,422844
3 Mixed_East_Slav @ 9,4266
4 Belarusian @ 9,443166
5 Belarusian_South @ 10,499361
6 Kuban_cossack @ 10,526537
7 Don_cossack @ 10,642884
8 Russian_Center @ 10,70681
9 Belarusian-East @ 12,290183
10 Russian_South @ 12,309841
11 Belarusian_West @ 12,483797
12 Lithuanian @ 13,029205
13 Balt @ 13,337268
14 Russian-West @ 13,653197
15 Mordovian @ 13,894891
16 Sorb @ 14,083877
17 Russian-North-West @ 14,177446
18 Russian_North @ 14,900959
19 Latvian @ 14,901919
20 Kashub @ 15,386663
500 iterations.

Using 2 populations approximation:
1 Pole+Pole @ 8,937809
2 Belarusian_Russian+Pole @ 8,98131
3 Mixed_East_Slav+Pole @ 8,981792
4 Belarusian+Pole @ 9,135116
5 Belarusian+Belarusian_Russian @ 9,355271
6 Belarusian+Mixed_East_Slav @ 9,356679
7 Kuban_cossack+Pole @ 9,382613
8 Belarusian_Russian+Belarusian_Russian @ 9,422844
9 Belarusian_Russian+Mixed_East_Slav @ 9,424661
10 Mixed_East_Slav+Mixed_East_Slav @ 9,4266
11 Belarusian+Belarusian @ 9,443166
12 Belarusian_Russian+Don_cossack @ 9,450441
13 Don_cossack+Mixed_East_Slav @ 9,452661
14 Don_cossack+Pole @ 9,568632
15 Belarusian_South+Pole @ 9,661574
16 Pole+Russian_Center @ 9,685975
17 Belarusian+Don_cossack @ 9,709348
18 Belarusian+Kuban_cossack @ 9,780391
19 Belarusian_Russian+Kuban_cossack @ 9,822815
20 Kuban_cossack+Mixed_East_Slav @ 9,828033
125250 iterations.

Using 3 populations approximation:
1 50% Pole +25% Mixed_East_Slav +25% Pole @ 8,908059
2 50% Pole +25% Belarusian_Russian +25% Pole @ 8,908191
3 50% Belarusian_Russian +25% Pole +25% Pole @ 8,98131
4 50% Pole +25% Belarusian_Russian +25% Mixed_East_Slav @ 8,981535
5 50% Mixed_East_Slav +25% Pole +25% Pole @ 8,981792
6 50% Belarusian_Russian +25% Belarusian_Russian +25% Croat_BH @ 9,021481
7 50% Pole +25% Belarusian +25% Pole @ 9,02207
8 50% Belarusian_Russian +25% Croat_BH +25% Mixed_East_Slav @ 9,022615
9 50% Mixed_East_Slav +25% Belarusian_Russian +25% Croat_BH @ 9,02378
10 50% Mixed_East_Slav +25% Croat_BH +25% Mixed_East_Slav @ 9,024977
11 50% Pole +25% Belarusian +25% Belarusian_Russian @ 9,038362
12 50% Pole +25% Belarusian +25% Mixed_East_Slav @ 9,038476
13 50% Pole +25% Kuban_cossack +25% Pole @ 9,062601
14 50% Pole +25% Belarusian_Russian +25% Don_cossack @ 9,120385
15 50% Pole +25% Don_cossack +25% Mixed_East_Slav @ 9,120712
16 50% Belarusian +25% Pole +25% Pole @ 9,135116
17 50% Pole +25% Belarusian_Russian +25% Kuban_cossack @ 9,138975
18 50% Pole +25% Kuban_cossack +25% Mixed_East_Slav @ 9,14013
19 50% Belarusian_Russian +25% Don_cossack +25% Pole @ 9,150554
20 50% Mixed_East_Slav +25% Don_cossack +25% Pole @ 9,151937
27478144 iterations.

Using 4 populations approximation:
1 Mixed_East_Slav+Pole+Pole+Pole @ 8,908059
2 Belarusian_Russian+Pole+Pole+Pole @ 8,908191
3 Pole+Pole+Pole+Pole @ 8,937809
4 Belarusian_Russian+Belarusian_Russian+Pole+Pole @ 8,98131
5 Belarusian_Russian+Mixed_East_Slav+Pole+Pole @ 8,981535
6 Mixed_East_Slav+Mixed_East_Slav+Pole+Pole @ 8,981792
7 Belarusian_Russian+Belarusian_Russian+Belarusian_R ussian+Croat_BH @ 9,021481
8 Belarusian+Pole+Pole+Pole @ 9,02207
9 Belarusian_Russian+Belarusian_Russian+Croat_BH+Mix ed_East_Slav @ 9,022615
10 Belarusian_Russian+Croat_BH+Mixed_East_Slav+Mixed_ East_Slav @ 9,02378
11 Croat_BH+Mixed_East_Slav+Mixed_East_Slav+Mixed_Eas t_Slav @ 9,024977
12 Belarusian+Belarusian_Russian+Pole+Pole @ 9,038362
13 Belarusian+Mixed_East_Slav+Pole+Pole @ 9,038476
14 Kuban_cossack+Pole+Pole+Pole @ 9,062601
15 Belarusian_Russian+Don_cossack+Pole+Pole @ 9,120385
16 Don_cossack+Mixed_East_Slav+Pole+Pole @ 9,120712
17 Belarusian+Belarusian+Pole+Pole @ 9,135116
18 Belarusian_Russian+Kuban_cossack+Pole+Pole @ 9,138975
19 Kuban_cossack+Mixed_East_Slav+Pole+Pole @ 9,14013
20 Belarusian_Russian+Belarusian_Russian+Don_cossack+ Pole @ 9,150554
21 Belarusian_Russian+Don_cossack+Mixed_East_Slav+Pol e @ 9,15123
22 Don_cossack+Mixed_East_Slav+Mixed_East_Slav+Pole @ 9,151937
23 Belarusian_Russian+Belarusian_Russian+Belarusian_R ussian+Pole @ 9,154706
24 Belarusian_Russian+Belarusian_Russian+Mixed_East_S lav+Pole @ 9,155276
25 Belarusian+Belarusian_Russian+Belarusian_Russian+P ole @ 9,155483
26 Belarusian_Russian+Mixed_East_Slav+Mixed_East_Slav +Pole @ 9,155878
27 Belarusian+Belarusian_Russian+Mixed_East_Slav+Pole @ 9,155945
28 Belarusian+Mixed_East_Slav+Mixed_East_Slav+Pole @ 9,156439
29 Mixed_East_Slav+Mixed_East_Slav+Mixed_East_Slav+Po le @ 9,156511
30 Belarusian_Russian+Belarusian_Russian+Croat_BH+Kub an_cossack @ 9,163085
31 Belarusian_Russian+Croat_BH+Kuban_cossack+Mixed_Ea st_Slav @ 9,165133
32 Croat_BH+Kuban_cossack+Mixed_East_Slav+Mixed_East_ Slav @ 9,167211
33 Don_cossack+Pole+Pole+Pole @ 9,190584
34 Belarusian+Belarusian+Belarusian_Russian+Pole @ 9,196053
35 Belarusian+Belarusian+Mixed_East_Slav+Pole @ 9,196406
36 Belarusian+Belarusian_Russian+Belarusian_Russian+C roat_BH @ 9,200485
37 Belarusian+Kuban_cossack+Pole+Pole @ 9,20099
38 Belarusian+Belarusian_Russian+Croat_BH+Mixed_East_ Slav @ 9,201489
39 Belarusian+Croat_BH+Mixed_East_Slav+Mixed_East_Sla v @ 9,202525
40 Belarusian_Russian+Belarusian_Russian+Croat_BH+Pol e @ 9,22312


Obviously no good fits and no improvements in multi pop as it lacks some components.

4Admix doesn't compute "Oracle" mode, only the "Oracle4" and no mix mode, it's possible to do it in R manually but it's a bit of a pain.

Petalpusher
11-18-2016, 03:50 PM
K23b file formated for 4Admix 62996

@Litvin > If it crashes it needs dots instead of commas (random bug on some computers)

Lucas
11-18-2016, 03:51 PM
^^ Nice. Thanks for datasheet.

Do you have maybe some datasheet with averages for Puntdnal?????

Petalpusher
11-18-2016, 04:05 PM
^^ Nice. Thanks for datasheet.

Do you have maybe some datasheet with averages for Puntdnal?????

All the calculators have a spreadsheet on Gedmatch.

Peterski
11-18-2016, 04:20 PM
All the calculators have a spreadsheet on Gedmatch.

Yes but in case of puntDNAL it is not a file, just text:

puntDNAL K15:

Population S_Indian Mediterranean Siberian Wht_Nile_River Amerindian S_African E_Asian Caucasian NE_European Omo_River W_African Horn_Of_Africa Oceanian Beringian SW_Asian
Lithuanian 0.80 16.00 0.50 0.00 0.40 0.00 0.20 5.00 73.00 0.00 0.00 0.30 0.50 0.00 3.30
Belarusian 0.80 17.30 1.20 0.10 0.40 0.20 0.40 5.70 68.70 0.00 0.00 1.00 0.60 0.60 3.00
Finnish 1.10 15.80 6.80 0.00 0.50 0.00 0.00 4.30 68.00 0.00 0.00 0.50 0.20 0.50 2.30
Karelian 1.10 15.90 6.00 0.00 0.00 0.00 1.00 6.00 67.00 0.00 0.00 1.00 0.60 0.60 0.80
Russian 0.50 16.50 5.50 0.00 0.60 0.00 0.40 5.80 66.40 0.20 0.10 0.70 0.60 0.90 1.80
Mordovian 0.40 16.50 6.00 0.10 0.40 0.00 0.30 5.20 65.90 0.00 0.00 0.30 0.30 0.60 4.00
Polish 1.00 23.40 0.30 0.00 0.10 0.00 0.00 7.00 64.70 0.00 0.00 0.50 0.30 0.20 2.50
Swedish 0.80 26.30 0.70 0.00 0.00 0.00 0.00 7.10 62.00 0.10 0.10 0.60 0.40 0.30 1.60
Norwegian 1.00 28.00 0.40 0.00 0.30 0.00 0.30 7.00 59.60 0.00 0.00 0.60 0.50 0.60 1.70
Scottish 0.90 30.00 0.10 0.00 0.30 0.00 0.00 8.20 58.50 0.00 0.00 0.00 0.30 0.10 1.60
North_German 0.90 27.90 0.30 0.00 0.50 0.00 0.00 9.00 58.50 0.00 0.10 0.70 0.30 0.30 1.50
Orcadian 1.00 29.50 0.10 0.00 0.20 0.00 0.00 8.70 57.10 0.00 0.00 0.50 0.20 0.20 2.50
English 0.90 30.60 0.10 0.00 0.20 0.00 0.00 8.70 56.70 0.00 0.00 0.30 0.20 0.20 2.10
Irish 1.00 29.20 0.00 0.00 0.00 0.00 0.00 10.50 56.50 0.00 0.00 0.50 0.20 0.10 2.00
Slovenian 1.00 26.30 0.60 0.00 0.00 0.00 0.00 11.40 56.30 0.00 0.00 0.50 0.30 0.30 3.30
Austrian 1.00 27.00 0.00 0.00 0.00 0.00 0.30 10.50 56.00 0.00 0.00 0.30 0.20 0.20 4.50
Hungarian 1.00 26.20 0.40 0.20 0.30 0.10 0.50 11.60 54.70 0.00 0.10 0.50 0.40 0.40 3.60
Utahn_White 1.00 32.50 0.00 0.00 0.00 0.00 0.00 9.80 53.50 0.00 0.00 0.50 0.30 0.20 2.20
Chuvash 1.80 7.20 18.80 0.00 1.00 0.00 4.00 9.50 53.50 0.00 0.30 1.10 0.20 1.00 1.60
Croatian 1.00 26.80 0.20 0.00 0.40 0.00 0.20 13.20 53.00 0.00 0.00 0.30 0.40 0.50 4.00
South_German 1.00 32.50 0.00 0.00 0.00 0.00 0.20 9.80 52.50 0.00 0.00 0.80 0.50 0.50 2.20
French 1.00 35.00 0.10 0.00 0.50 0.10 0.30 9.80 49.50 0.20 0.10 0.50 0.40 0.40 2.10
Serbian 0.50 30.10 0.50 0.20 0.50 0.00 0.30 15.10 48.00 0.30 0.00 0.40 0.30 0.20 3.60
Bosnian 1.40 29.00 0.90 0.20 0.30 0.20 0.50 17.00 43.40 0.10 0.10 0.30 0.30 0.50 5.80
Basque 0.00 52.00 0.00 0.00 0.00 0.00 0.00 4.00 42.00 0.00 0.00 0.00 0.00 0.00 2.00
Macedonian 0.50 32.50 1.00 0.20 0.40 0.00 0.30 16.50 41.80 0.10 0.10 1.00 0.30 0.30 5.00
Spaniard 0.80 43.00 0.00 0.00 0.00 0.00 0.00 7.20 41.00 0.00 0.00 2.50 0.00 0.00 5.50
Romanian 1.00 34.60 0.30 0.00 0.10 0.00 0.30 16.00 40.80 0.00 0.00 1.00 0.20 0.20 5.50
Bulgarian 1.00 34.30 0.30 0.00 0.30 0.00 0.30 16.00 39.80 0.00 0.00 1.50 0.50 0.50 5.50
Bashkir 2.60 7.50 19.80 0.30 2.40 0.20 11.00 12.50 39.80 0.30 0.10 0.20 0.30 1.50 1.50
Montenegrin 0.80 36.00 0.00 0.00 0.00 0.00 0.00 16.20 38.50 0.00 0.00 2.00 0.00 0.00 6.50
Portuguese 0.80 44.00 0.00 0.00 0.00 0.00 0.00 8.50 37.90 0.00 1.00 4.80 0.00 0.00 3.00
Italian 0.80 39.00 0.00 0.00 0.00 0.00 0.00 16.00 37.00 0.00 0.00 1.70 0.00 0.00 5.50
Brazilian 0.30 38.00 0.40 0.50 5.00 0.50 0.20 7.50 32.00 0.50 7.10 3.00 0.00 0.00 5.00
Greek_Thessaly 0.50 36.00 0.00 0.00 0.00 0.00 0.00 22.50 32.00 0.00 0.00 1.70 0.00 0.00 7.30
Albanian 0.20 39.00 0.20 0.10 0.20 0.10 0.10 19.40 31.10 0.10 0.00 2.00 0.10 0.00 7.40
Tuscan 0.20 40.00 0.00 0.00 0.00 0.00 0.00 21.00 30.00 0.00 0.00 1.80 0.00 0.00 7.00
Greek_Central 0.70 36.00 0.00 0.00 0.00 0.00 0.00 24.50 30.00 0.00 0.00 1.30 0.00 0.00 7.50
West_Greenlander 0.00 10.00 0.00 0.00 3.00 0.00 0.00 0.00 30.00 0.00 0.00 0.00 0.00 57.00 0.00
Selkup 4.00 0.10 49.10 0.00 3.50 0.00 3.00 5.00 29.00 0.00 0.00 0.00 0.10 6.00 0.20
Mexican 0.90 26.00 1.50 0.50 27.00 0.00 1.00 7.00 25.50 0.10 3.00 0.50 1.00 2.00 4.00
Puerto_Rican 0.50 30.00 0.30 1.00 14.70 0.30 0.30 5.00 22.00 0.40 22.00 0.50 0.00 0.00 3.00
Lezgin 1.60 17.00 1.50 0.50 1.00 0.00 0.00 53.00 22.00 0.00 0.00 0.40 0.40 0.60 2.00
Chechen 2.00 19.00 2.00 0.20 0.50 0.10 1.30 48.00 21.70 0.00 0.20 0.50 0.50 1.00 3.00
Ashkenazy_Jew 0.80 40.00 0.00 0.20 0.30 0.30 0.20 22.00 20.70 0.30 0.40 4.50 0.00 0.00 10.30
Sicilian 0.00 42.00 0.00 0.00 0.20 0.00 0.00 23.30 20.00 0.00 0.00 4.30 0.30 0.00 9.90
Dominican 0.60 27.00 0.60 0.50 10.00 0.00 0.00 5.00 20.00 0.50 30.00 2.00 0.00 0.00 3.80
Tadjik 12.50 9.00 6.50 0.10 1.50 0.50 6.10 39.30 19.50 0.60 0.10 0.40 0.30 0.80 2.80
Sardinian 0.00 64.00 0.00 0.00 0.00 0.30 0.00 6.00 19.30 0.00 0.20 2.00 0.20 0.00 8.00
Nogai 0.50 17.30 9.00 0.00 0.90 0.20 13.00 37.00 18.40 0.40 0.20 0.60 0.60 1.00 0.90
Colombian_B 0.10 29.00 0.00 0.50 37.50 0.80 0.00 4.00 18.00 0.50 6.00 0.80 0.20 0.10 2.50
Balkar 0.20 21.40 2.00 0.10 0.60 0.00 4.70 50.00 17.50 0.00 0.00 0.00 0.20 0.30 3.00
Sephardic_Jew 0.50 41.50 0.00 0.00 0.20 0.00 0.00 24.50 17.00 0.00 0.00 5.50 0.20 0.10 10.50
Kumyk 1.60 20.00 4.00 0.40 0.30 0.00 3.00 49.00 17.00 0.00 0.00 0.40 0.20 0.10 4.00
Uzbek 14.00 7.00 20.00 0.10 0.70 0.20 12.10 23.50 16.00 0.50 0.20 1.00 0.40 1.40 2.90
Pashtun 21.30 10.00 4.00 0.50 1.00 0.30 3.00 39.00 15.80 0.00 0.00 0.10 1.00 1.00 3.00
North_Ossetian 0.00 22.00 3.00 0.00 0.30 0.00 3.50 52.00 15.30 0.10 0.00 0.60 0.50 1.00 1.70
Pathan 32.00 4.30 1.70 0.00 1.00 0.00 0.20 41.00 15.00 0.70 0.10 0.10 0.30 0.60 3.00
Ecuadorian 0.00 22.00 0.00 0.20 53.00 0.50 0.20 3.00 14.50 0.40 4.00 0.10 0.10 0.00 2.00
UP_Brahmin 51.00 2.00 1.00 0.00 0.50 0.00 1.00 29.00 14.00 0.10 0.00 0.20 0.50 0.30 0.40
Uyghur 9.00 5.50 18.80 0.40 1.60 0.00 27.00 21.00 13.50 0.30 0.00 0.30 0.60 1.00 1.00
Romani 25.00 25.00 0.00 0.00 0.00 0.00 2.00 25.00 13.00 0.00 0.00 0.00 2.00 0.00 8.00
Turkmen 8.80 13.00 10.00 0.00 0.40 0.20 11.50 35.50 13.00 0.40 0.10 0.30 0.30 1.50 5.00
Hazara 10.20 3.70 20.00 0.00 0.30 0.10 27.00 22.00 12.50 0.70 0.10 0.30 0.30 1.30 1.50
Kashmiri 40.00 5.00 2.00 0.00 0.00 0.00 0.30 37.00 12.00 0.00 0.00 0.00 1.00 1.00 1.70
Burusho 34.00 0.00 5.00 0.10 1.70 0.00 6.00 38.80 12.00 0.00 0.10 0.00 0.40 1.10 0.80
Turk_Kayseri 2.50 31.00 2.00 0.00 0.00 0.00 2.50 41.00 10.50 0.00 0.00 1.00 0.50 0.50 8.50
UP_Muslim 53.00 1.50 1.00 0.00 0.50 0.00 2.00 29.00 10.00 0.50 0.00 0.00 1.00 0.50 1.00
Turk_Istanbul 3.00 27.00 2.00 0.00 0.50 0.00 2.80 47.00 9.00 0.00 1.00 1.00 0.50 0.70 5.50
Sindhi 41.00 2.00 0.50 0.70 0.70 0.30 0.40 42.00 9.00 0.30 0.10 0.10 0.50 0.40 2.00
Tamil_Nadu_Brahmin 54.00 2.00 1.00 0.40 0.20 0.30 1.20 29.00 9.00 0.00 0.00 0.10 1.00 1.00 0.80
Mongolian 1.20 1.90 29.70 0.20 0.80 0.20 47.60 6.70 8.80 0.20 0.00 0.00 0.30 1.90 0.50
Kurdish 6.40 26.40 0.20 0.00 0.80 0.30 0.30 44.80 8.70 0.00 0.00 2.80 0.20 0.10 9.00
Dolgan 0.00 1.70 66.90 0.00 0.80 0.10 19.50 0.70 8.50 0.10 0.00 0.10 0.00 1.00 0.60
Iranian 7.70 19.60 1.00 0.30 0.50 0.30 1.00 47.50 8.00 0.00 0.60 2.30 0.20 0.50 10.50
Brahui 25.00 1.00 0.00 0.60 0.40 0.50 0.50 56.40 8.00 0.10 0.20 0.20 0.60 0.50 6.00
African_American 0.30 3.00 0.40 5.80 1.10 2.10 0.30 2.00 7.80 0.80 74.50 0.80 0.10 0.30 0.70
Balochi 24.50 3.30 0.50 0.30 0.50 0.50 0.50 55.90 7.30 0.20 0.30 0.70 0.50 0.50 4.50
Abkhasian 0.40 28.00 0.00 0.00 0.30 0.00 0.60 59.60 7.00 0.00 0.10 0.10 0.50 0.60 2.80
Kanjar 61.00 2.00 0.20 0.00 0.40 0.00 0.40 27.00 7.00 0.20 0.00 0.30 0.60 0.40 0.50
Azerbaijani 4.00 26.60 2.00 0.50 0.50 0.20 2.20 46.40 6.30 0.20 0.20 0.50 0.40 0.50 9.50
Cypriot 0.10 42.00 0.20 0.00 0.00 0.00 0.30 34.00 6.00 0.00 0.00 3.00 0.10 0.30 14.00
Armenian 1.00 31.70 0.10 0.00 0.30 0.40 0.50 47.80 6.00 0.00 0.10 1.40 0.50 0.20 10.00
Lebanese 2.50 28.50 0.30 0.50 0.70 0.60 0.50 33.00 6.00 0.40 1.50 7.20 0.30 0.00 18.00
Makrani 21.00 3.10 0.50 0.30 0.30 0.20 0.00 55.50 6.00 0.70 3.80 0.80 0.20 0.20 7.40
East_Greenlander 0.00 2.00 0.00 0.00 1.00 0.00 0.00 0.00 6.00 0.00 0.00 0.00 0.00 91.00 0.00
Bengali 58.00 0.00 1.50 0.00 1.00 0.00 5.00 28.00 6.00 0.00 0.00 0.00 0.20 0.30 0.00
Tharus 62.00 0.50 1.20 0.20 0.80 0.10 1.50 27.30 5.40 0.10 0.10 0.10 0.30 0.20 0.20
Palestinian 2.00 31.00 0.00 0.70 0.30 0.20 0.20 32.00 4.50 0.30 1.50 8.50 0.20 0.00 18.60
Syrian 2.80 26.20 0.00 0.50 0.50 0.00 0.30 32.30 4.50 0.50 2.00 8.70 0.50 0.00 21.20
Assyrian 1.10 32.90 0.80 0.00 0.00 0.00 0.00 44.30 4.30 0.30 0.30 2.70 0.20 0.50 12.60
Uttar_Pradesh_SC 68.00 0.50 1.40 0.00 0.50 0.00 2.30 22.00 4.20 0.00 0.00 0.10 0.60 0.10 0.30
Turk_Trabzon 0.50 36.40 0.20 0.00 0.00 0.00 0.30 48.50 4.00 0.00 0.00 1.00 0.00 0.00 9.10
Jordanian 2.50 28.00 0.00 0.50 0.00 0.10 0.30 31.00 4.00 0.50 1.60 8.50 0.00 0.00 23.00
Iraqi_Jew 3.60 27.00 0.00 0.50 0.60 0.10 0.60 32.70 4.00 0.40 1.50 8.70 0.30 0.00 20.00
Georgian 0.00 32.00 0.00 0.00 0.00 0.00 0.40 63.00 3.00 0.00 0.00 0.10 0.20 0.30 1.00
Bedouin_B 0.50 6.00 0.00 1.50 0.00 0.00 0.00 5.00 3.00 0.00 2.00 2.00 0.00 0.00 80.00
Moroccan 0.80 41.00 0.40 0.10 0.20 0.00 0.50 1.20 2.80 0.40 17.00 21.10 0.00 0.00 14.50
Somali_Benadiri 12.60 7.00 0.00 14.00 0.00 1.70 2.00 15.00 2.70 4.00 11.30 20.80 0.00 0.00 8.90
Samaritian 0.00 38.00 0.00 0.00 0.00 0.00 0.00 32.00 2.50 0.00 0.00 6.50 0.00 0.00 21.00
Druze 2.00 34.00 0.00 0.00 0.10 0.10 0.10 38.00 2.00 0.10 0.30 3.00 0.20 0.30 19.80
Colombian_A 0.00 2.00 0.00 0.00 96.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00
Cambodian 10.50 0.00 3.50 0.00 0.30 0.00 77.50 0.10 2.00 0.00 0.00 0.00 5.00 0.50 0.60
Nganassan 0.00 0.00 95.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 3.00 0.00
Filipino 7.50 1.70 2.00 0.00 0.30 0.00 80.00 1.10 1.80 0.10 0.10 0.30 4.50 0.50 0.10
Tamil_Nadu_SC 67.00 0.50 0.40 0.00 0.00 0.00 4.00 22.00 1.40 0.10 0.10 0.50 2.00 0.40 1.60
Libyan 0.50 35.00 0.00 3.00 0.00 0.00 0.00 17.00 1.00 0.00 4.50 15.00 0.00 0.00 24.00
Bedouin_A 0.50 23.00 0.00 1.00 0.00 0.00 0.00 28.70 1.00 0.80 2.00 9.00 0.00 0.00 34.00
Eritrean 0.00 11.00 0.00 21.00 0.00 0.50 0.00 5.00 1.00 6.00 3.00 38.00 0.00 0.00 14.50
Tygray 0.00 11.00 0.00 21.00 0.00 0.70 0.00 5.00 1.00 6.00 2.00 37.30 0.00 0.00 16.00
Amhara 0.00 8.50 0.30 21.00 0.00 0.80 0.00 4.40 1.00 7.00 3.00 39.00 0.00 0.00 15.00
Afar 1.00 7.00 0.00 22.00 0.40 0.60 0.00 3.00 1.00 5.00 2.00 43.00 0.00 0.00 15.00
Somali 0.00 3.00 0.00 27.00 0.00 1.00 0.00 2.00 1.00 4.00 3.00 53.00 0.00 0.00 6.00
Sakilli 73.00 0.50 0.50 0.00 0.00 0.00 6.00 15.50 1.00 0.10 0.10 0.80 1.20 0.50 0.80
North_Kannadi 75.00 0.10 2.00 0.10 0.30 0.10 5.00 14.00 1.00 0.10 0.10 0.30 1.00 0.40 0.50
Koryak 0.30 0.00 36.40 0.00 11.70 0.00 27.70 0.50 1.00 0.00 0.00 0.00 0.50 21.90 0.00
Burmese 19.50 0.00 8.60 0.00 1.00 0.20 63.50 3.00 0.70 0.10 0.10 0.20 2.00 0.50 0.60
Saudi 0.70 17.00 0.00 0.10 0.00 0.30 0.10 17.00 0.60 0.10 0.10 10.00 0.00 0.00 54.00
Egyptian 0.00 33.00 0.00 3.00 0.10 0.10 0.10 20.50 0.50 0.00 3.90 17.80 0.00 0.00 21.00
Yemenese 3.00 20.00 0.00 3.00 0.40 0.40 0.20 23.00 0.50 0.90 5.50 13.10 0.00 0.00 30.00
Oromo 0.00 5.50 0.40 22.00 0.10 1.50 0.00 2.50 0.50 11.00 3.00 41.00 0.00 0.00 12.50
Sandawe 0.00 1.00 0.00 20.00 0.20 13.50 0.00 1.00 0.50 10.00 29.00 23.30 0.00 0.00 1.50
Maasai 0.00 0.00 0.00 44.00 0.00 4.00 0.00 0.00 0.50 4.00 16.00 28.50 0.00 0.00 3.00
Maya 0.30 0.00 3.00 0.00 86.00 0.00 0.60 1.00 0.40 0.20 1.00 1.00 0.50 5.50 0.50
Wolayta 0.80 3.00 0.00 22.00 0.50 5.10 0.00 0.50 0.30 25.00 3.00 32.30 0.00 0.00 7.50
Singaporean 15.60 0.20 1.00 0.10 0.30 0.00 75.00 0.40 0.30 0.00 0.00 0.40 6.00 0.50 0.20
Xhosa 0.30 0.50 0.10 6.00 0.30 27.00 0.30 0.20 0.20 3.20 59.50 1.00 0.30 0.20 0.90
AriCultivator 0.20 0.00 0.00 22.80 0.10 6.10 0.00 0.00 0.20 46.00 1.00 22.50 0.00 0.00 1.10
Malayan 78.00 0.90 1.70 0.10 0.00 0.20 7.50 7.00 0.10 0.10 0.00 0.00 3.40 0.10 0.90
Mozabite_Berber 1.00 44.00 0.00 2.50 0.00 0.00 0.00 1.00 0.00 0.00 15.00 22.50 0.00 0.00 14.00
Yemenite_Jew 0.60 32.00 0.40 2.00 0.20 0.00 0.10 18.00 0.00 0.10 1.00 17.60 0.00 0.00 28.00
NE_Bantu 0.00 0.60 0.00 21.00 0.00 2.00 0.00 0.00 0.00 1.00 73.90 0.50 0.00 0.00 1.00
Paniya 80.00 0.30 1.70 0.80 0.00 0.10 8.50 3.00 0.00 0.40 0.00 0.50 4.60 0.00 0.10
South_Sudanese 0.00 0.20 0.00 82.10 0.00 0.00 0.00 1.00 0.00 0.10 15.30 0.60 0.00 0.00 0.70
Gumuz 0.30 0.10 0.10 80.00 0.00 0.60 0.00 0.00 0.00 18.80 0.00 0.00 0.10 0.00 0.00
Bamoun 0.10 0.10 0.10 8.20 0.00 2.00 0.00 0.00 0.00 4.00 84.10 1.10 0.10 0.10 0.10
Vietnamese 6.90 0.00 2.60 0.00 0.10 0.10 85.00 0.00 0.00 0.00 0.00 0.50 3.60 0.60 0.60
Melanesian 3.50 0.00 0.00 0.00 0.00 0.00 23.00 0.00 0.00 0.00 0.00 0.00 73.50 0.00 0.00
Chinese 1.50 0.00 8.00 0.00 0.00 0.00 88.00 0.00 0.00 0.00 0.00 0.00 1.20 1.30 0.00
Japanese 1.00 0.00 2.00 0.00 0.00 0.00 96.50 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00
Bambaran 0.10 0.00 0.10 6.00 0.00 2.00 0.50 0.00 0.00 2.00 88.00 0.60 0.20 0.20 0.30
Luhya 0.00 0.00 0.00 24.00 0.00 2.00 0.00 0.00 0.00 2.00 68.00 3.00 0.00 0.00 1.00
Igbo 0.00 0.00 0.00 7.00 0.00 1.00 0.00 0.00 0.00 2.00 87.00 1.00 0.50 0.50 1.00
Hausa 0.00 0.00 0.00 8.00 0.00 2.10 0.00 0.00 0.00 3.00 85.80 1.00 0.00 0.00 0.10
AriBlackSmith 0.00 0.00 0.00 2.00 0.00 0.80 0.00 0.00 0.00 96.40 0.00 0.80 0.00 0.00 0.00
Brong 0.00 0.00 0.00 4.00 0.00 1.60 0.00 0.00 0.00 2.00 91.00 0.50 0.30 0.30 0.30
Anuak 0.00 0.00 0.00 79.50 0.00 0.50 0.00 0.00 0.00 1.20 18.00 0.10 0.00 0.00 0.70
San 0.00 0.00 0.00 0.00 0.00 99.80 0.00 0.00 0.00 0.00 0.10 0.10 0.00 0.00 0.00
Mandinka 0.00 0.00 0.00 3.00 0.00 0.30 0.20 0.00 0.00 2.00 93.00 0.00 0.00 0.00 1.50
Karitiana 0.00 0.00 0.00 0.00 100.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
Pima 0.00 0.00 1.00 0.00 97.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00
Pygmy 0.00 0.00 0.00 0.50 0.00 36.00 0.00 0.00 0.00 0.50 63.00 0.00 0.00 0.00 0.00
SA_Bantu 0.00 0.00 0.00 3.40 0.00 23.00 0.00 0.00 0.00 0.60 73.00 0.00 0.00 0.00 0.00
Surui 0.00 0.00 0.00 0.00 99.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00
Yoruban 0.00 0.00 0.00 2.00 0.00 1.00 0.00 0.00 0.00 0.00 97.00 0.00 0.00 0.00 0.00
Papuan 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 98.00 0.00 0.00

As for MDLP K23b, I found another file with average, but it is "beta version":

https://drive.google.com/file/d/0B6n7iMc2P-yQd0hWR3YwSWRlMnM/edit

Petalpusher
11-18-2016, 04:25 PM
^ You need to convert it yourself, it's easy follow the same format as in the K23b file, same title with the right number, 1 component on each line, then select everything and replace all . by , in textedit. You re good to go.

Lucas
11-18-2016, 04:46 PM
Guys! It isn't any problem to use such text file. Anyway Open Office Calc read it properly. You can post here every calc files:)
Just order him to treat spaces as commas.
Here it is converted Puntdnal to xls
https://docs.google.com/spreadsheets/d/1ct3jalQSdji5eVdckbnnEp3Jt3Nesm63QmyeweZBhs8/edit?usp=sharing

Peterski
11-20-2016, 07:36 PM
K23b file formated for 4Admix 62996

@Litvin > If it crashes it needs dots instead of commas (random bug on some computers)

Thanks! That file works perfectly, but do you have one for MDLP World22 as well?

I made one, but it doesn't work (it does not crash, but it lags and freezes instead):

http://www81.zippyshare.com/v/MzrJVo2o/file.html

Petalpusher
11-20-2016, 10:47 PM
Thanks! That file works perfectly, but do you have one for MDLP World22 as well?

I made one, but it doesn't work (it does not crash, but it lags and freezes instead):

http://www81.zippyshare.com/v/MzrJVo2o/file.html

I made one out, it works, same results than on Gedmatch


Least-squares method.

Using 1 population approximation:
1 German-South @ 2,429507
2 CEU @ 7,115468
3 British @ 7,157137
4 French @ 7,661014
5 Swiss @ 8,194389

Using 2 populations approximation:
1 Italian_North+Swedish @ 2,376764

Using 3 populations approximation:
1 50% German-South +25% Italian_North +25% Swedish @ 1,857481

Using 4 populations approximation:
1 Corsican+German-South+German_V+Swedish @ 1,761106


The file : 63032



Was also able to try Gaussian with the calculator (since that's not on Gedmatch), but it takes a lot of time to compute.



Using 1 population approximation:
1 German_V @ 3,298065
2 French @ 3,437319
3 German-South @ 3,521965
4 Provancestralal @ 3,574669
5 Croatian_V @ 3,773723

Using 2 populations approximation:
1 German_V+Provancestralal @ 3,086989

Using 3 populations approximation:
1 50% German_V +25% Sardinian +25% Swedish_V @ 2,882913

Using 4 populations approximation:
1 Atlantic_Mediterranean_Neolithic+North-East-European+Inkeri+Italian-Center @ 2,35658





ps: Provancestralalel...Provençal ffs!