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gadele
09-16-2018, 05:57 PM
I was reading a thread and I have notice a map plotted by user Jana. I asked her how to do it and she sent me the following link https://www.theapricity.com/forum/showthread.php?197107-Post-Eurogenes-k15-individualized-PCA-mapping-coordinates

coordinates:
X = 491
Y = 280

I have plotted the result in the map

https://i.imgur.com/YmlOhOJ.png

I have some questions though.
Do I have to consider that my admixture is close to people nearby?
if so what is the difference with single population result of Oracle K15



<tbody>
1
Spanish_Murcia

</tbody>

Murcia is not too close to the coordinates I got. Which one should be the right one?

Moje ime
09-16-2018, 06:44 PM
Can you post here Gedmatch Eurogenes k13 result?

Dukagjini
09-16-2018, 06:45 PM
I was reading a thread and I have notice a map plotted by user Jana. I asked her how to do it and she sent me the following link https://www.theapricity.com/forum/showthread.php?197107-Post-Eurogenes-k15-individualized-PCA-mapping-coordinates

coordinates:
X = 491
Y = 280

I have plotted the result in the map

https://i.imgur.com/YmlOhOJ.png

I have some questions though.
Do I have to consider that my admixture is close to people nearby?
if so what is the difference with single population result of Oracle K15



<tbody>
1
Spanish_Murcia

</tbody>

Murcia is not too close to the coordinates I got. Which one should be the right one?

What software did you use to plot the coordinates and how did you plot it on the software?

gadele
09-16-2018, 06:49 PM
What software did you use to plot the coordinates and how did you plot it on the software?

User Jana sent me this link https://www.theapricity.com/forum/showthread.php?197107-Post-Eurogenes-k15-individualized-PCA-mapping-coordinates

I went to this site http://gen3553.pagesperso-orange.fr/ADN/K15.htm

I got the coordinates
X = 491
Y = 280

Then I opened the map into Gimp. I used rulers to help me out: vertical = 491 & horizontal = 280 and I set the red point

Dukagjini
09-16-2018, 06:50 PM
User Jana sent me this link https://www.theapricity.com/forum/showthread.php?197107-Post-Eurogenes-k15-individualized-PCA-mapping-coordinates

I went to this site http://gen3553.pagesperso-orange.fr/ADN/K15.htm

I got the coordinates
X = 491
Y = 280

Then I opened the map into Gimp. I used rulers to help me out: vertical = 491 & horizontal = 280 and I set the red point




Thanks. I'll download gimp right now. You dont need to resize the plot image or anything right?

gadele
09-16-2018, 06:52 PM
Can you post here Gedmatch Eurogenes k13 result?
Moje ime for pltting I used K15 results not K13.
But anyway here you go ( K13)

Eurogenes K13 Oracle results:

K13 Oracle ref data revised 21 Nov 2013


Admix Results (sorted):


<tbody>
#
Population
Percent


1
North_Atlantic
30.97


2
West_Med
24.29


3
Amerindian
17.84


4
East_Med
12.5


5
Baltic
8.1


6
Red_Sea
2.4


7
Northeast_African
1.15


8
South_Asian
1.15


9
Sub-Saharan
0.74


10
Oceanian
0.72


11
East_Asian
0.15

</tbody>

Single Population Sharing:


<tbody>
#
Population (source)
Distance


1
Spanish_Extremadura
21.33

</tbody>

Moje ime
09-16-2018, 06:54 PM
Moje ime for pltting I used K15 results not K13.
But anyway here you go ( K13)

Eurogenes K13 Oracle results:[COLOR=#000000][FONT="]K13 Oracle ref data revised 21

Admix Results (sorted):


<tbody>
#
Population
Percent


1
North_Atlantic
30.97


2
West_Med
24.29


3
Amerindian
17.84


4
East_Med
12.5


5
Baltic
8.1


6
Red_Sea
2.4


7
Northeast_African
1.15


8
South_Asian
1.15


9
Sub-Saharan
0.74


10
Oceanian
0.72


11
East_Asian
0.15

</tbody>

Single Population Sharing:


<tbody>
#
Population (source)
Distance


1
Spanish_Extremadura
21.33

</tbody>


Is Spanish first in the list? It is very far distance, something is wrong there.

Accordion to your population list I think it does look like average for Bulgarians.

But I can't be sure, other users will tell better.

edit: I checked the list again, I don't know actually may be some mix.

gadele
09-16-2018, 06:55 PM
Thanks. I'll download gimp right now. You dont need to resize the plot image or anything right?
Exactly do not resize. Just set the rulers according to coordinates. What I did, was to crop the image to the relevant area but only after doing the plot juts for a better view.

gadele
09-16-2018, 06:56 PM
Is Spanish first in the list? It is very far distance, something is wrong there.

Accordion to your population list I think it does look like average for Bulgarians.

But I can't be sure, other users will tell better.

Thanks Moje ime. Yes that is the question why I have two different results on plotting the map and the single population result from oracle.

Moje ime
09-16-2018, 07:00 PM
Thanks Moje ime. Yes that is the question why I have two different results on plotting the map and the single population result from oracle.

Did you try more Gedmatch calculators?

Ibericus
09-17-2018, 05:52 PM
SHe already told you why., Because of your 17% Amerindian which is pulling you east in the PCA

gadele
09-17-2018, 06:06 PM
SHe already told you why., Because of your 17% Amerindian which is pulling you east in the PCA

yes she did. ( I opened this thread before getting the answer on the other thread). thanks

Bumblebeaa
05-28-2019, 08:26 AM
Hey, could someone please help me plot my coordinates? I haven’t got a laptop or computer to use, i’d really appreciate it. Thank you.

They are:

Abcsisse: (x - axis) 430
Ordonnee: (y - axis) 277

J. Ketch
05-28-2019, 08:47 AM
Hey, could someone please help me plot my coordinates? I haven’t got a laptop or computer to use, i’d really appreciate it. Thank you.

They are:

Abcsisse: (x - axis) 430
Ordonnee: (y - axis) 277
Red dot.
https://i.postimg.cc/155TXf4c/K15V4.png

ph2ter
05-31-2019, 10:45 PM
Red dot.
https://i.postimg.cc/155TXf4c/K15V4.png

My K15 PCA full plot:


https://www.dropbox.com/s/237ga0gpllfxlt5/K15May2019.png?dl=0

fergus667
03-21-2020, 11:12 AM
This graph is wrong, French have to be more at left than West Norwegian because they are more Atlantic and West Mediterannean anf less Baltic and Eastern.