gadele
09-23-2018, 03:04 PM
I came across this site with some interesting calculators. Some of them are for comparison though.
Available utilities for processing unzipped autosomal files from Family Tree DNA and/or 23andMe:
Search for Runs of Homozygosity (ROHs) (https://www.math.mun.ca/~dapike/FF23utils/roh.php)
Search for Heterozygous Sequences (https://www.math.mun.ca/~dapike/FF23utils/het.php)
Search for Shared DNA Segments in Two Raw Data Files (https://www.math.mun.ca/~dapike/FF23utils/pair-comp.php)
Inspect a Shared DNA Segment in Two Raw Data Files (https://www.math.mun.ca/~dapike/FF23utils/strand.php)
Inspect Shared DNA Segments in a Trio of Raw Data Files (https://www.math.mun.ca/~dapike/FF23utils/trio.php)
Search for Discordant SNPs in Parent-Child Raw Data Files (https://www.math.mun.ca/~dapike/FF23utils/pair-*********php)
Search for Discordant SNPs when given data for child and both parents (https://www.math.mun.ca/~dapike/FF23utils/trio-*********php)
Search for Differently Reported SNPs (https://www.math.mun.ca/~dapike/FF23utils/diffs.php)
Phase a Child when given data for child and both parents (https://www.math.mun.ca/~dapike/FF23utils/trio-phase.php)
Phase Siblings with Data from Both Parents (https://www.math.mun.ca/~dapike/FF23utils/phase-sibs-2parent.php)
These utilities were developed by David Pike (https://www.math.mun.ca/~dapike/).
I have run the heterozygous one. And I got the following results.
Almost 29% of my allels are heterozygous that means that were subject of dominant / recessive rules. The rest was already defined since they were homozygous.
What porcentage do you have?
Total autosomal (Chr 1-22): 4.048 % ( 28440 of 702540 SNPs) are NoCalls
Total autosomal (Chr 1-22): 67.072 % (471210 of 702540 SNPs) are Homozygous (this tally excludes NoCalls)
Total autosomal (Chr 1-22): 28.879 % (202890 of 702540 SNPs) are Heterozygous (this tally excludes NoCalls)
Processing Completed.
Available utilities for processing unzipped autosomal files from Family Tree DNA and/or 23andMe:
Search for Runs of Homozygosity (ROHs) (https://www.math.mun.ca/~dapike/FF23utils/roh.php)
Search for Heterozygous Sequences (https://www.math.mun.ca/~dapike/FF23utils/het.php)
Search for Shared DNA Segments in Two Raw Data Files (https://www.math.mun.ca/~dapike/FF23utils/pair-comp.php)
Inspect a Shared DNA Segment in Two Raw Data Files (https://www.math.mun.ca/~dapike/FF23utils/strand.php)
Inspect Shared DNA Segments in a Trio of Raw Data Files (https://www.math.mun.ca/~dapike/FF23utils/trio.php)
Search for Discordant SNPs in Parent-Child Raw Data Files (https://www.math.mun.ca/~dapike/FF23utils/pair-*********php)
Search for Discordant SNPs when given data for child and both parents (https://www.math.mun.ca/~dapike/FF23utils/trio-*********php)
Search for Differently Reported SNPs (https://www.math.mun.ca/~dapike/FF23utils/diffs.php)
Phase a Child when given data for child and both parents (https://www.math.mun.ca/~dapike/FF23utils/trio-phase.php)
Phase Siblings with Data from Both Parents (https://www.math.mun.ca/~dapike/FF23utils/phase-sibs-2parent.php)
These utilities were developed by David Pike (https://www.math.mun.ca/~dapike/).
I have run the heterozygous one. And I got the following results.
Almost 29% of my allels are heterozygous that means that were subject of dominant / recessive rules. The rest was already defined since they were homozygous.
What porcentage do you have?
Total autosomal (Chr 1-22): 4.048 % ( 28440 of 702540 SNPs) are NoCalls
Total autosomal (Chr 1-22): 67.072 % (471210 of 702540 SNPs) are Homozygous (this tally excludes NoCalls)
Total autosomal (Chr 1-22): 28.879 % (202890 of 702540 SNPs) are Heterozygous (this tally excludes NoCalls)
Processing Completed.