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View Full Version : Gradient Descent Optimization - Run Your Own Models! RANDWULF



marco
02-02-2020, 09:03 PM
https://yk.github.io/ancestry use adam optimiser

https://anthrogenica.com/showthread.php?19360-Eurogenes-Global-25-with-Gradient-Descent-Optimization-Run-Your-Own-Models!

here is my results Ancients scaled individuals not averaged post yours:

Distance: 0.8798003615870137%

Canary_Islands_Guanche: 22.6%
TZA_Pemba_600BP: 11.5%
Levant_JOR_EBA: 11.3%
Iberia_Southeast_c.10-16CE: 10.7%
MAR_EN: 9.5%
Levant_Canaanite_MBA: 7.7%
Levant_ISR_C: 7.2%
EGY_Hellenistic: 6.5%
MAR_LN: 5.3%
Levant_LBN_MA_Mixed: 2.3%
Levant_Natufian: 2.0%
MAR_Taforalt: 0.7%
EGY_Late_Period: 0.7%
Other: 2.0%

Cumansky
02-02-2020, 10:04 PM
Modern (Scaled)

Distance: 0.27363367525991883%

Lithuanian_RA: 13.3%
Russian_Tver: 12.0%
Latvian: 10.1%
Talysh_Azerbaijan: 8.3%
Albanian: 7.4%
Cameroon_Mbo: 7.0%
Yemenite_Dhamar: 5.9%
Turkish_Balkans: 5.9%
Kusunda: 5.2%
Buryat: 4.1%
Tripuri: 3.7%
Batak: 3.3%
BedouinA: 2.7%
Ethiopian_Tigray: 2.7%
Nivkh: 2.0%
Esan_Nigeria: 1.3%
Birhor: 1.3%
Surui: 0.7%
Mbuti: 0.7%
Yakut: 0.6%
Other: 1.6%

celticdragongod
02-02-2020, 10:55 PM
Ancient (scaled):

Distance: 0.9835833508945079%

England_IA: 27.3%
ISL_Viking_Age_Gaelic: 25.9%
England_Saxon: 18.2%
USA_colonial_period: 13.1%
DEU_MA: 5.9%
RUS_Ingria_IA: 5.8%
HUN_Tisza_LN: 2.7%
SWE_Viking_Age_Sigtuna: 0.6%
Other: 0.5%

Nearest Neighbors
England_IA:I0160
Distance: 2.0%

ITA_Collegno_MA:CL146
Distance: 2.0%

England_Saxon:I0774
Distance: 2.5%

England_Saxon:I0159
Distance: 2.5%

England_Saxon:I0161
Distance: 2.7%

HUN_MA_Szolad:SZ7
Distance: 2.8%

SWE_Viking_Age_Sigtuna:vik_grt035
Distance: 2.8%

HUN_MA_Szolad:SZ4
Distance: 2.8%

HUN_MA_Szolad:SZ16
Distance: 2.8%

England_Saxon:I0157
Distance: 2.8%

England_Saxon:NO3423
Distance: 2.8%

ITA_Collegno_MA:CL84
Distance: 2.9%

ITA_Collegno_MA:CL83
Distance: 2.9%

Scotland_LBA:I2860
Distance: 2.9%

Scotland_MBA:I2655
Distance: 2.9%

England_Roman:6DT3
Distance: 3.0%

SWE_Viking_Age_Sigtuna:vik_stg021
Distance: 3.0%

England_Roman:6DT18
Distance: 3.1%

Bell_Beaker_England:I1767
Distance: 3.1%

Scotland_LBA:I2859
Distance: 3.1%

celticdragongod
02-02-2020, 10:59 PM
Modern (scaled):

Distance: 0.7294143579544794%

Irish: 31.7%
Dutch: 26.6%
Icelandic: 15.0%
Scottish: 12.8%
German: 9.9%
Other: 4.1%

Nearest Neighbors
Shetlandic:Shetlands3
Distance: 1.8%

English_Cornwall:HG00160
Distance: 1.8%

English_Cornwall:HG00259
Distance: 2.0%

English:English2
Distance: 2.1%

Swedish:Sweden4
Distance: 2.1%

Scottish:Scottish9
Distance: 2.2%

Norwegian:NOR108
Distance: 2.3%

Scottish:Scottish8
Distance: 2.3%

Orcadian:HGDP00799
Distance: 2.3%

Welsh:WalesDR94
Distance: 2.3%

English_Cornwall:HG00243
Distance: 2.3%

Scottish:Scottish11
Distance: 2.3%

Scottish:Scottish24
Distance: 2.3%

Scottish:Scottish27
Distance: 2.3%

English_Cornwall:HG00232
Distance: 2.3%

Welsh:WAL003
Distance: 2.4%

Welsh:WalesCHF13
Distance: 2.4%

Welsh:WAL001
Distance: 2.4%

Welsh:WalesCHF56
Distance: 2.4%

French_Brittany:Rennes_B_23
Distance: 2.4%

Lucas
02-02-2020, 11:04 PM
Did you use standard options?


Modern (scaled)

Distance: 1.3682825628889705%

Ukrainian: 69.3%
Lithuanian_PZ: 17.7%
Polish: 12.8%
Other: 0.2%

Lucas
02-02-2020, 11:04 PM
Modern Pop Avg scaled

Distance: 2.404104175096692%

Russian_Smolensk: 82.5%
Sorb_Niederlausitz: 17.5%
Other: 0.1%

Lucas
02-02-2020, 11:07 PM
Changed in Optimizer: AdamGrad to Adam.

Seems better.

Modern Pop Avg scaled

Distance: 2.2109940596614845%

Lithuanian_PZ: 69.0%
Greek_Thrace: 22.8%
Russian_Smolensk: 6.6%
Other: 1.6%


Modern(scaled)

Distance: 1.2850123550635946%

Ukrainian: 51.4%
Polish: 21.5%
Lithuanian_PZ: 15.6%
Belarusian: 8.0%
Russian_Voronez: 3.0%
Other: 0.6%

JamesBond007
02-02-2020, 11:35 PM
This beta JavaScript is not working with my mobile web browsers it seems.

marco
02-03-2020, 12:40 AM
This beta JavaScript is not working with my mobile web browsers it seems.

Only works on computer bro for the moment

JQP4545
02-03-2020, 01:24 AM
Distance: 26.16896114924713%
German: 1.6%
Dutch: 1.3%
Irish: 1.3%
Mordovian: 0.9%
Polish: 0.8%
French_Alsace: 0.8%
French_Brittany: 0.8%
Udmurt: 0.8%
Ukrainian: 0.8%
French_Occitanie: 0.7%
French_Nord: 0.7%
Karelian: 0.7%
Yusufzai: 0.7%
Bashkir: 0.6%
Uthmankhel: 0.6%
Egyptian: 0.6%
Kohistani: 0.6%
Korean: 0.6%
Tarkalani: 0.6%
Cameroon_Aghem: 0.6%
Scottish: 0.6%
Belgian: 0.6%
French_Auvergne: 0.6%
Turkmen: 0.6%
Portuguese: 0.5%
Other: 80.9%

andre
02-03-2020, 08:17 AM
MODERN
Distance: 0.5767785367393543%

Greek_Thrace: 31.3%
Macedonian: 24.1%
Albanian: 14.5%
Polish: 13.1%
Austrian: 8.5%
Iraqi_Jew: 3.2%
Ukrainian: 2.9%
Nivkh: 1.7%
Other: 0.7%

ANCIENT
Distance: 0.49915146089475704%

Baltic_EST_BA: 17.9%
SWE_Viking_Age_Sigtuna: 12.8%
RUS_Ingria_IA: 12.0%
HUN_ALPc_Tiszadob_MN: 11.3%
HUN_MA_Szolad_o1: 10.4%
TKM_Geoksyur_En: 10.3%
HUN_LBK_MN: 8.1%
GRC_Peloponnese_N: 4.2%
Levant_ISR_C: 3.5%
Anatolia_Kumtepe_N_low_res: 2.7%
Levant_ISR_Ashkelon_IA1: 2.6%
RUS_Devils_Gate_Cave_N: 2.4%
ZAF_2100BP: 1.2%
Other: 0.4%

JamesBond007
02-03-2020, 09:23 AM
Only works on computer bro for the moment

That does not give me confidence in the software author's math skills and as you know this software works with math.

PC sales have been in decline for the last seven years. More people, on the planet ,now, have smartphones than computers.

I have a computer, though, I will use it later.

Cumansky
02-03-2020, 11:56 AM
Distance: 0.27363367525991883%

West Eurasia: 70.7%=

Lithuanian_RA: 13.3%
Russian_Tver: 12.0%
Latvian: 10.1%
Talysh_Azerbaijan: 8.3%
Albanian: 7.4%
Turkish_Balkans: 5.9%
Kusunda: 5.2%
Tripuri: 3.7%
Batak: 3.3%
Birhor: 1.3%

SSA/Barbary Coast/Levant: 20.3%=

Cameroon_Mbo: 7.0%
Yemenite_Dhamar: 5.9%
BedouinA: 2.7%
Ethiopian_Tigray: 2.7%
Esan_Nigeria: 1.3%
Mbuti: 0.7%

East Eurasia/America: 7.4%=

Buryat: 4.1%
Nivkh: 2.0%
Surui: 0.7%
Yakut: 0.6%

Extinct Prehuman: 1.6%=

Other: 1.6%

JamesBond007
02-03-2020, 12:32 PM
Modern scaled :

Nearest Neighbors

Norwegian:NOR106

Distance: 2.4%
Irish:Irish26

Distance: 2.5%
Orcadian:HGDP00802

Distance: 2.6%
Welsh:WalesCHF12

Distance: 2.7%
English_Cornwall:HG00255

Distance: 2.7%
Welsh:WalesCHF13

Distance: 2.7%
English_Cornwall:HG00249

Distance: 2.8%
English_Cornwall:HG00264

Distance: 2.8%
Irish:Irish62

Distance: 2.8%
Welsh:WalesBK58

Distance: 2.8%
Scottish:Scottish13

Distance: 2.8%
English:England15

Distance: 2.9%

Distance: 1.2218110897596997%

Irish: 36.2%
Dutch: 25.3%
Belgian: 23.1%
Norwegian: 7.1%
English: 2.0%
Swedish: 1.2%
Other: 5.0%

JamesBond007
02-03-2020, 12:37 PM
Modern population averaged scaled :

Nearest Neighbors

Dutch:undefined

Distance: 2.9%
Norwegian:undefined

Distance: 3.0%
Welsh:undefined

Distance: 3.1%
Irish:undefined

Distance: 3.1%
Scottish:undefined

Distance: 3.2%
English:undefined

Distance: 3.2%
Orcadian:undefined

Distance: 3.3%
French_Brittany:undefined

Distance: 3.3%
English_Cornwall:undefined

Distance: 3.4%
Shetlandic:undefined

Distance: 3.4%
Icelandic:undefined

Distance: 3.6%
German:undefined

Distance: 3.7%
Swedish:undefined

Distance: 3.8%
Belgian:undefined

Distance: 3.9%
French_Nord:undefined

Distance: 4.4%
French_Paris:undefined

Distance: 4.4%
French_Alsace:undefined

Distance: 4.7%
Austrian:undefined

Distance: 4.7%
Swiss_German:undefined

Distance: 4.9%

Distance: 2.5407657045907297%

Norwegian: 73.5%
Spanish_Soria: 15.1%
Irish: 2.2%
Dutch: 1.3%
Other: 7.9%

marco
02-03-2020, 09:45 PM
Increase learning rate to 26000 and decrease steps to 100 try this with your moderns from randwulf

nittionia
02-03-2020, 10:08 PM
Deleted..
wait I did it wrong the first time

Celestia
02-03-2020, 10:56 PM
Ancient (Scaled)

Distance: 1.2271532475313324%
ITA_Collegno_MA: 32.5%
Bell_Beaker_Bavaria: 13.4%
Iberia_Central_BA: 11.9%
DEU_MA: 10.4%
Wales_CA_EBA: 10.1%
Iberia_North_BA: 8.1%
DEU_MA_ACD: 5.2%
Corded_Ware_DEU: 3.2%
RUS_Alan_MA: 2.9%
TZA_Pemba_600BP: 1.6%
Other: 0.8%

Modern (Scaled)
Distance: 1.0419024547369832%
Dutch: 32.0%
German: 24.6%
Irish: 14.6%
English: 12.2%
Belgian: 9.1%
Spanish_Navarra: 4.6%
Luhya_Kenya: 1.1%
Other: 2.0%

Perhaps Northern French gets overlapped with Dutch.