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View Full Version : Gedmatch result of a Bahnar, a Austroasiatic/Mon-Khmer hill tribe from Central Highlands in Vietnam



Maguzanci
03-01-2020, 07:42 PM
Look like this is the only gedmatch kit of a Central Highland tribe from Vietnam. For those who don't know, here, they are a tribal Austroasiatic/Mon-Khmer ethnic group: https://en.wikipedia.org/wiki/Bahnar_people

What is interesting is this individual score South Asian and very minor West Eurasian unlike most Vietnamese which is strange as you would expected a tribe such as Bahnar to live very isolated from mainstream society for them to receive this Indian-like admixture.

His PuntDNAL K13: The result is a bit peculiar and can be modelled as Dai+minor South Asian or Vietnamese+some Middle Eastern.

Admix Results (sorted):
# Population Percent
1 NE_Asia 47.24
2 SE_Asia 39.14
3 South_Asia 7.09
4 Oceania 2.89
5 SW_Asia 1.29
6 East_Africa 0.95
7 West_Asia 0.86
8 SW_Europe 0.42
9 South_Africa 0.12



Single Population Sharing:

# Population (source) Distance
1 Vietnamese 4.95
2 Dai 7.26
3 Lahu 10.13
4 Thai 12.21
5 Burmese 16.98
6 Cambodian 18.07
7 Miaozu 20.13
8 Malayan 23.85
9 She 25.19
10 Han_South_China 25.25
11 Filipino 27.92
12 Visayan 27.97
13 Luzon 28.31
14 Naxi 32.83
15 Dusun 36.06
16 Han_North_China 37.93
17 Murut 38.09
18 Korean 41.43
19 Xibo 43.03
20 Japanese 45.56

Mixed Mode Population Sharing:

# Primary Population (source) Secondary Population (source) Distance
1 63.9% Dai + 36.1% Thai @ 2.74
2 54.3% Miaozu + 45.7% Malayan @ 2.75
3 51.4% Malayan + 48.6% She @ 2.87
4 92.1% Dai + 7.9% Tamil_Nadu_Caste @ 3.14
5 92.2% Dai + 7.8% Pulliyar @ 3.18
6 91.6% Dai + 8.4% Gond @ 3.2
7 92.4% Dai + 7.6% Paniya @ 3.22
8 92.5% Dai + 7.5% Hakkipikki @ 3.22
9 92.4% Dai + 7.6% Sakilli @ 3.23
10 92.1% Dai + 7.9% Chenchus @ 3.23
11 92.3% Dai + 7.7% North_Kannadi @ 3.23
12 92.3% Dai + 7.7% Piramalai_Kallars @ 3.26
13 91.5% Dai + 8.5% Bengali @ 3.26
14 92.2% Dai + 7.8% UP_Muslim @ 3.29
15 92.4% Dai + 7.6% Kurumba @ 3.31
16 71.2% Lahu + 28.8% Malayan @ 3.36
17 95.3% Vietnamese + 4.7% Egyptian @ 3.36
18 76.4% Vietnamese + 23.6% Thai @ 3.37
19 95.5% Vietnamese + 4.5% Yemeni @ 3.4
20 91.3% Dai + 8.7% Mawasi @ 3.41


Here is the Vahaduo result of the PuntDNAL K13: Murut is showing the minor Austronesian affinity of this sample. What is interesting is that the result also score almost 3% West Eurasian/Caucasoid (Saudi+Brahui), 2% Australoid/Papuan, almost 1% African (South Sudanese) and 1.6% ASI (ancestral South Indian)

Distance: 0.6132% / 0.61320959
51.6 Vietnamese
38.8 Dai
2.6 Murut
2.6 Saudi
1.8 Papuan
1.6 Simulated_AASI
0.8 Sudanese_South
0.2 Brahui

MDLP World result: He score a lot of Indian compared to ethnic Kinh. Wonder how his result compared to other Vietnamese ethnic minorities. It also interesting he score Middle Eastern and African.

Admix Results (sorted):
# Population Percent
1 East_Asian 85.87
2 Indian 8.77
3 Middle_East 2.26
4 Melanesian 1.27
5 Sub_Saharian 0.91
6 Paleo_African 0.65
7 North_Asian 0.27


Single Population Sharing:

# Population (source) Distance
1 Indian-East 6.85
2 Khmer 7.43
3 Yizu 10.77
4 Naxi 10.85
5 Han 12.03
6 Han-Beijing 12.19
7 Dai 12.32
8 Lahu 12.41
9 Indian_East 12.78
10 Tujia 13.07
11 Chinese-South 13.65
12 Miaozu 14.61
13 Buma 14.71
14 She 15.01
15 Tu 15.93
16 Japanese 16.11
17 Xibo 26.46
18 Mongola 34.34
19 Daur 38.78
20 Hezhen 39.02

Mixed Mode Population Sharing:

# Primary Population (source) Secondary Population (source) Distance
1 65.8% Khmer + 34.2% Chinese-South @ 2.56
2 64.8% Khmer + 35.2% Tujia @ 2.58
3 67.4% Khmer + 32.6% Miaozu @ 2.67
4 68.1% Khmer + 31.9% She @ 2.72
5 62.9% Khmer + 37.1% Han @ 2.75
6 63.7% Khmer + 36.3% Lahu @ 2.76
7 63.5% Khmer + 36.5% Dai @ 2.78
8 54.6% Dai + 45.4% Buma @ 2.87
9 54.4% Lahu + 45.6% Buma @ 2.88
10 77.6% Lahu + 22.4% Kusunda @ 3.12
11 77.7% Dai + 22.3% Kusunda @ 3.14
12 50.5% Buma + 49.5% She @ 3.17
13 50.2% Miaozu + 49.8% Buma @ 3.21
14 63.8% Khmer + 36.2% Han-Beijing @ 3.26
15 88.1% Dai + 11.9% Indian @ 3.33
16 88% Lahu + 12% Indian @ 3.35
17 74.6% Miaozu + 25.4% Kusunda @ 3.53
18 61% Khmer + 39% Yizu @ 3.6
19 74% She + 26% Kusunda @ 3.62
20 52% Chinese-South + 48% Buma @ 3.73


Vahaduo model of MDLP World result: He is mostly Dai+some Chinese (used to represent Viet-like ancestry as there are no Viet samples here), 7% (Ancient Ancestral South Indian-an indigenous component to South Asians, it indicated that this individual has Indian ancestry), 3% West Eurasian (all Saudi which is weird), almost 1% African and almost zero Papuan.

77.0 Dai
11.2 Chinese-South
7.4 Simulated_AASI
3.2 Saudi
0.8 Yoruba
0.4 Papuan

PuntDNAL K12 Modern: The South Asian here also seems like actual Indian ancestry or something ASI related. Interestingly here, his West (around 3.6% here) Eurasian/Caucasoid seem mostly European here with some Near Eastern (there is also Anatolian Neolithic but is likely noise)

Admix Results (sorted):

# Population Percent
1 East_Asian 81.04
2 South_Asian 6.17
3 Beringian 3.83
4 European_HG 3.01
5 Siberian 2.52
6 Oceanian 2.43
7 Near_East 0.61
8 Sub-Saharan 0.38
9 Anatolian_NF 0.03



Single Population Sharing:

# Population (source) Distance
1 Cambodian 8.85
2 Vietnamese 9.82
3 Han_Chinese 14.97
4 Ami 19.01
5 Japanese 23.88
6 Korean 26.1
7 Mongolian 33.45
8 Hazara 61.37
9 Altaian 66.43
10 Tuvinian 67.71
11 Turkmen 70.63
12 Uzbek 71.65
13 Nogai 78.09
14 Bengali_Muslim 79.99
15 Burusho 83.43
16 Turkish_Aydin 84.26
17 Dolgan 85.68
18 Somali_Benadiri 86.21
19 Turkish 86.79
20 Chuvash 87.01

Mixed Mode Population Sharing:

# Primary Population (source) Secondary Population (source) Distance
1 54.1% Cambodian + 45.9% Vietnamese @ 5.59
2 91.8% Vietnamese + 8.2% Punjabi_Jatt_Muslim @ 5.95
3 92% Vietnamese + 8% UP_Muslim @ 5.97
4 91.9% Vietnamese + 8.1% Haryana_Jatt @ 6.04
5 91.9% Vietnamese + 8.1% Punjabi_Jatt_Sikh @ 6.05
6 91.2% Vietnamese + 8.8% Bengali_Muslim @ 6.06
7 91.9% Vietnamese + 8.1% Kashmir @ 6.07
8 92.6% Vietnamese + 7.4% Lithuanian @ 6.16
9 92.6% Vietnamese + 7.4% Estonian @ 6.17
10 92.3% Vietnamese + 7.7% Gujarati @ 6.19
11 92.5% Vietnamese + 7.5% Belarusian @ 6.21
12 74.1% Cambodian + 25.9% Ami @ 6.24
13 92.4% Vietnamese + 7.6% Czech @ 6.24
14 92.3% Vietnamese + 7.7% Keralam @ 6.25
15 92.4% Vietnamese + 7.6% Russian @ 6.27
16 91.7% Vietnamese + 8.3% Burusho @ 6.28
17 92.6% Vietnamese + 7.4% Icelandic @ 6.28
18 92.5% Vietnamese + 7.5% Scottish_West @ 6.29
19 92.2% Vietnamese + 7.8% Pathan @ 6.31
20 92.4% Vietnamese + 7.6% Hungarian @ 6.32


nMonte model of the PuntDNAL K12 Modern result:

It get bad distance fits though. So the PuntDNA K12 calc in this case might be more accurate than the nMonte.

[1] "distance%=3.942"
Vietnamese,46.9
Ami,39.7
Simulated_AASI,4.8
Lithuanian,4.7
Papuan,2.4
Saudi,0.7
Yoruba,0.6
Khomani,0.2
Han_Chinese,0
Makrani,0
Basque_Spaniard,0
Kurdish,0

His Eurasia K3: I don't think he has actual SSA. It might be a Basal Eurasian affinity from his South Asian and West Eurasian admix. The percent of West Eurasian is higher than other calculators though.

E_Eurasian 93.14 Pct
SSA 1.89 Pct
W_Eurasian 4.98 Pct

What do you think? Is this individual's result of different from most Vietnamese that you saw?

Leto
03-01-2020, 07:45 PM
What does he get on Harappa?

Maguzanci
03-01-2020, 07:45 PM
Sadly, I don't have pics of the individual.

Maguzanci
03-01-2020, 07:51 PM
What does he get on Harappa?

Here. He seems to have almost 6% South Indian and at least 1% Caucasoid (there might be some more if the South Indian. Also other calcs, indicate that the individual is almost 3-4% West Eurasian).

Admix Results (sorted):

# Population Percent
1 SE-Asian 61.05
2 NE-Asian 29.46
3 S-Indian 5.82
4 Papuan 1.39
5 Caucasian 0.94
6 American 0.64
7 Beringian 0.32
8 San 0.22
9 NE-Euro 0.11
10 Pygmy 0.07

Single Population Sharing:

# Population (source) Distance
1 kinh (1000genomes) 6.23
2 dai-chinese (1000genomes) 9.14
3 vietnamese (xing) 9.59
4 lahu (hgdp) 10.31
5 dai (hgdp) 10.71
6 khmer-cambodian (xing) 13.88
7 thai (xing) 18.62
8 cambodian (hgdp) 21.72
9 singapore-malay (sgvp) 24.88
10 burmanese (chaubey) 36.05
11 iban (xing) 37.33
12 miao (hgdp) 37.89
13 khasi (chaubey) 38.85
14 garo (chaubey) 38.9
15 singapore-chinese (sgvp) 39.87
16 she (hgdp) 42.18
17 samoan (xing) 42.3
18 chinese (xing) 42.47
19 han-chinese-south (1000genomes) 43.56
20 han (hgdp) 43.95

Mixed Mode Population Sharing:

# Primary Population (source) Secondary Population (source) Distance
1 59.3% vietnamese (xing) + 40.7% khmer-cambodian (xing) @ 1.73
2 69.8% kinh (1000genomes) + 30.2% khmer-cambodian (xing) @ 1.8
3 75.8% kinh (1000genomes) + 24.2% thai (xing) @ 1.94
4 81.3% dai-chinese (1000genomes) + 18.7% khasi (chaubey) @ 1.95
5 69.8% vietnamese (xing) + 30.2% cambodian (hgdp) @ 2.15
6 87.4% dai-chinese (1000genomes) + 12.6% great-andamanese (reich) @ 2.43
7 72.8% vietnamese (xing) + 27.2% singapore-malay (sgvp) @ 2.46
8 66.6% vietnamese (xing) + 33.4% thai (xing) @ 2.54
9 87.4% dai-chinese (1000genomes) + 12.6% onge (reich) @ 2.57
10 79% dai (hgdp) + 21% khasi (chaubey) @ 3.02
11 91.7% dai-chinese (1000genomes) + 8.3% pulliyar (metspalu) @ 3.05
12 91.8% dai-chinese (1000genomes) + 8.2% irula (xing) @ 3.14
13 91.6% dai-chinese (1000genomes) + 8.4% paniya (chaubey) @ 3.22
14 90.8% dai-chinese (1000genomes) + 9.2% chenchu (reich) @ 3.24
15 91.2% dai-chinese (1000genomes) + 8.8% north-kannadi (chaubey) @ 3.28
16 91.1% dai-chinese (1000genomes) + 8.9% kurumba (reich) @ 3.29
17 79.2% dai (hgdp) + 20.8% garo (chaubey) @ 3.3
18 69.4% iban (xing) + 30.6% japanese (xing) @ 3.31
19 77.9% dai (hgdp) + 22.1% burmanese (chaubey) @ 3.31
20 91.2% dai-chinese (1000genomes) + 8.8% hakkipikki (metspalu) @ 3.35

Leto
03-01-2020, 08:00 PM
Here. He seems to have almost 6% South Indian and at least 1% Caucasoid (there might be some more if the South Indian. Also other calcs, indicate that the individual is almost 3-4% West Eurasian).

Well, 1% Caucasoid is like a white person getting 1-2% Asian.

Maguzanci
03-01-2020, 08:03 PM
Well, 1% Caucasoid is like a white person getting 1-2% Asian.

That's true. But I think the South Indian he scoring is hiding some Caucasoid he has as well. If you look at other calcs in the OP, he is scoring around 3-3.5% Caucasoid (also using vahaduo).

SharpFork
03-01-2020, 08:27 PM
That's true. But I think the South Indian he scoring is hiding some Caucasoid he has as well. If you look at other calcs in the OP, he is scoring around 3-3.5% Caucasoid (also using vahaduo).
Why would South Indian hide Caucasoid? It's not like South Asian in Eurogenes.

Maguzanci
03-01-2020, 08:38 PM
Why would South Indian hide Caucasoid? It's not like South Asian in Eurogenes.

I don't know why but it does. I have run nMonte on certain samples who show less Caucasoid but when I used indigenous Austroasiatic Weddoid Adivasi tribes like Juang, Bonda as the South Indian proxy instead of typical South Asian pops, the Caucasoid ancestry increase by quite 2-3% percent.

Avicenna
03-01-2020, 09:01 PM
Why would South Indian hide Caucasoid? It's not like South Asian in Eurogenes.

No it does . It's half Caucasoid / western eurasian , mainly Caucasian , med , SW Asian , Baloch and ne euro .

SharpFork
03-01-2020, 09:05 PM
No it does . It's half Caucasoid / western eurasian , mainly Caucasian , med , SW Asian , Baloch and ne euro .
No, we are talking about Harappa not Eurogenes.


I don't know why but it does. I have run nMonte on certain samples who show less Caucasoid but when I used indigenous Austroasiatic Weddoid Adivasi tribes like Juang, Bonda as the South Indian proxy instead of typical South Asian pops, the Caucasoid affinity increase by quite 2-3% percent.
I never noticed such a thing and it wouldn't make sense for South Indian to be West Eurasian in a significant manner considering it's not that high in many Indian populations

Maguzanci
03-01-2020, 09:11 PM
MDLP K16 results of the Bahnar sample. Steppe and Near East indicate Caucasoid affinity at around 1.5%. Some more are definitely being absorbed by the Indian component as so many West Eurasian groups score minor amounts of Indian in this calc.

Admix Results (sorted):

# Population Percent
1 SouthEastAsian 85.91
2 Indian 4.38
3 Siberian 3.82
4 Oceanic 1.62
5 Steppe 1.31
6 Arctic 1.23
7 Subsaharian 0.62
8 Ancestor 0.43
9 Australian 0.3
10 NearEast 0.23
11 Amerindian 0.15

Single Population Sharing:

# Population (source) Distance
1 Kinh (Vietnam) 2.08
2 Dusun (Borneo) 3.6
3 Murut (Borneo) 3.83
4 Vietnamese (SouthVietnam) 4.07
5 Luzon (Philippines) 4.19
6 Dai (Xishuangbanna) 5.34
7 Lahu (Yunnan) 5.62
8 Vietnamese (CentralVietnam) 5.76
9 Filipino (Philippines) 6.19
10 Igorot (Philippines) 6.27
11 Vietnamese (NorthVietnam) 6.8
12 Ami (Taiwan) 7.8
13 Lebbo (Borneo) 8.19
14 Atajal (Taiwan) 8.25
15 She (Zhejiang) 8.52
16 Vizayan (Borneo) 9.24
17 Miao (Guizhou) 9.5
18 Han (China) 11.21
19 Cambodian (Cambodia) 12
20 Tujia (Hubei) 13.31

Mixed Mode Population Sharing:

# Primary Population (source) Secondary Population (source) Distance
1 70.9% Kinh (Vietnam) + 29.1% Dusun (Borneo) @ 1.6
2 74% Kinh (Vietnam) + 26% Murut (Borneo) @ 1.69
3 51.9% Murut (Borneo) + 48.1% Vietnamese (SouthVietnam) @ 1.74
4 91.7% Kinh (Vietnam) + 8.3% Cambodian (Cambodia) @ 1.77
5 98.5% Kinh (Vietnam) + 1.5% Savara (Odisha) @ 1.79
6 98.6% Kinh (Vietnam) + 1.4% Santhal (Jharkhand) @ 1.8
7 98.6% Kinh (Vietnam) + 1.4% Asur (Jharkhand) @ 1.8
8 98.7% Kinh (Vietnam) + 1.3% Satnami (Uttar_Pradesh) @ 1.8
9 98.7% Kinh (Vietnam) + 1.3% Brahmin (Madhya_Pradesh) @ 1.8
10 84.7% Dai (Xishuangbanna) + 15.3% Garo (Meghalaya) @ 1.8
11 99.1% Kinh (Vietnam) + 0.9% Melanesian (Bougainville) @ 1.8
12 98.8% Kinh (Vietnam) + 1.2% Pulliyar (Kerala) @ 1.8
13 98.5% Kinh (Vietnam) + 1.5% Dhurwa (Orissa) @ 1.8
14 98.4% Kinh (Vietnam) + 1.6% Kharia (Bihar) @ 1.8
15 98.7% Kinh (Vietnam) + 1.3% Nihali (Madhya_Pradesh) @ 1.8
16 98.8% Kinh (Vietnam) + 1.2% Paniya (Kerala) @ 1.8
17 98.4% Kinh (Vietnam) + 1.6% Gadaba (Odisha) @ 1.8
18 98.8% Kinh (Vietnam) + 1.2% Chamar (Uttar_Pradesh) @ 1.8
19 98.8% Kinh (Vietnam) + 1.2% Malayan (Andhra_Pradesh) @ 1.81
20 98.4% Kinh (Vietnam) + 1.6% Munda (Tripura) @ 1.81

Avicenna
03-01-2020, 09:15 PM
No, we are talking about Harappa not Eurogenes.


I never noticed such a thing and it wouldn't make sense for South Indian to be West Eurasian in a significant manner considering it's not that high in many Indian populations

Yes im talking about Harappa . The "south Indian " is exactly just over 50% western eurasian .

Leto
03-01-2020, 09:32 PM
Yes im talking about Harappa . The "south Indian " is exactly just over 50% western eurasian .
No way. 20% WA at most.

Avicenna
03-01-2020, 09:42 PM
No way. 20% WA at most.

South Indian component run on Harappa

Baloch 13.99%
Caucasian 20.20%
NE Euro 8.12%
Mediterranean 2.19%
SW Asian 5.51%
= 50.01 % western eurasian

ANE 15.46%
ENF 30.44%
WHG 4.83%

= 50.73% western eurasian .

SharpFork
03-01-2020, 09:45 PM
South Indian component run on Harappa

Baloch 13.99%
Caucasian 20.20%
NE Euro 8.12%
Mediterranean 2.19%
SW Asian 5.51%
= 50.01 % western eurasian

ANE 15.46%
ENF 30.44%
WHG 4.83%

= 50.73% western eurasian .

How are you running a component in the same calculator it came from and not getting 100% of itself? I'm confused

Avicenna
03-01-2020, 09:48 PM
How are you running a component in the same calculator it came from and not getting 100% of itself? I'm confused

I didn't run it btw . It's a spreadsheet from AG done by users . I don't exactly know the logistics but the south Indian is set to 0. So basically the non western eurasian parts of it goes to se Asian , ne asian, Siberian , Papuan etc .

Leto
03-01-2020, 09:50 PM
I didn't run it btw . It's a spreadsheet from AG done by users . I don't exactly know the logistics but the south Indian is set to 0. So basically the non western eurasian parts of it goes to se Asian , ne asian, Siberian , Papuan etc .
How WA is the American component?

SharpFork
03-01-2020, 09:52 PM
I didn't run it btw . It's a spreadsheet from AG done by users . I don't exactly know the logistics but the south Indian is set to 0. So basically the non western eurasian parts of it goes to se Asian , ne asian, Siberian , Papuan etc .
That doesn't make any sense though, it's like saying I'm a chimpanzee after excluding all other hominids. This doesn't prove at all that South Indian is 50% West Eurasian, it only shows what the best mix of the other components produces something close to South Indian.

Avicenna
03-01-2020, 09:56 PM
That doesn't make any sense though, it's like saying I'm a chimpanzee after excluding all other hominids. This doesn't prove at all that South Indian is 50% West Eurasian, it only shows what the best mix of the other components produces something close to South Indian.

No it does if you see the other run I posted below it . The south Indian is 50.73 % western eurasian , while the other half is eastern eurasian and ASE. It's also very consistent with ASI results posted much later. For instance , the recent bmac sample ( I will post it when I find it ) got 8% south Indian on Harappa , but got just less than 4% in total AASI on g25 nmonte. This confirms that half of south Indian is just Neolithic , steppe and CHG

In addition here is a afghans g25 results on nmonte


"sample": "Pashtun:surbakhun_AGUser",
"fit": 3.3458,
"IRN_Ganj_Dareh_N": 41.67,
"Anatolia_Barcin_N": 20.83,
"RUS_AfontovaGora3": 15.83,
"GEO_CHG": 10,
"Simulated_AASI": 7.5,
"NPL_Chokhopani_2700BP": 4.17,

She scores 15% south Indian on Harappa on the other hand . So exactly half .

SharpFork
03-01-2020, 10:01 PM
No it does if you see the other run I posted below it . The south Indian is 50.73 % western eurasian , while the other half is eastern eurasian and ASE. It's also very consistent with ASI results posted much later. For instance , the recent bmac sample ( I will post it when I find it ) got 8% south Indian on Harappa , but got just less than 4% in total AASI on g25 nmonte. This confirms that half of south Indian is just Neolithic , steppe and CHG

In addition here is a afghans g25 results on nmonte


"sample": "Pashtun:surbakhun_AGUser",
"fit": 3.3458,
"IRN_Ganj_Dareh_N": 41.67,
"Anatolia_Barcin_N": 20.83,
"RUS_AfontovaGora3": 15.83,
"GEO_CHG": 10,
"Simulated_AASI": 7.5,
"NPL_Chokhopani_2700BP": 4.17,

She scores 15% south Indian on Harappa on the other hand . So exactly half .
What about "Onge" then?

Avicenna
03-01-2020, 10:03 PM
What about "Onge" then?

On the spreadsheet the onge has 50% south Indian , and the rest being Papuan etc

Nomansman
03-03-2020, 06:41 AM
What about "Onge" then?

He even used samples that could hide some aasi itself, hence why the lower aasi:

sample": "Pashtun:surbakhun_AGUser",
"fit": 3.3458,
"IRN_Ganj_Dareh_N": 41.67,
"Anatolia_Barcin_N": 20.83,
"RUS_AfontovaGora3": 15.83,
"GEO_CHG": 10,
"Simulated_AASI": 7.5,
"NPL_Chokhopani_2700BP": 4.17,


ALso, if afghans would only get 7,5% aasi, that means nw south asians would get only 12-15%. Find it a bit odd they would get that low, considering the fact they dont really look 85-90% west eurasian, but rather being 1/4 to almost 1/3 east eurasian(aasi) which makes more sense to me tbh