gixajo
01-13-2021, 09:18 PM
Just for fun, as always.
Donīt expect get the same % than in original K13, of course.
Scaled.
https://vahaduo.github.io/vahaduo/
I add just 4 group of samples as spacial reference in this PCA, I know also 2 of the references are quite close.
https://i.imgur.com/R3bWe7h.png
North_Atlantic,0.1325593,0.1337507,0.0638800,0.050 8907,0.0394997,0.0199777,0.0031217,0.0057113,0.003 7393,-0.0007613,-0.0054230,0.0055750,-0.0099407,-0.0108430,0.0222443,0.0036457,-0.0109377,0.0022727,0.0024637,0.0005757,0.0058040, 0.0025773,0.0010957,0.0142847,0.0009677
Baltic,0.13419740,0.11830925,0.08826510,0.08638635 ,0.04299255,0.03189105,0.01198555,0.01426095,-0.00087945,-0.03266560,-0.00175390,-0.01308335,0.02134025,0.02636855,-0.00861145,0.00288380,0.00146670,-0.00143170,0.00147695,0.00325795,-0.00070510,-0.00379000,0.00666760,-0.00428965,0.00284405
West_Med,0.12236,0.1655315,0.02357,-0.056525,0.0569335,-0.021614,-0.00705,0.0015,0.0396775,0.0750815,0.000325,0.0173 845,-0.0271305,-0.0114225,-0.0152685,-0.007425,0.0057365,0.0005065,0.004274,-0.0128185,0.004492,0.000309,-0.011462,-0.022473,0.0011975
West_Asian,0.0992254,0.0786815,-0.0200851,-0.0319207,-0.0200989,-0.0106798,0.0050411,-0.0002120,-0.0184973,-0.0010534,-0.0007855,0.0013163,-0.0028215,0.0017155,-0.0041298,0.0000325,0.0029920,0.0011112,0.0018688,-0.0017495,-0.0029590,-0.0000647,-0.0019151,-0.0004425,-0.0000719
East_Med,0.1070315,0.145769,-0.0193374,-0.0508842,0.0045435,-0.0168057,0.0030456,-0.0030695,-0.0026649,0.0147648,0.0034242,0.0017514,-0.0031743,0.0016794,-0.0119076,-0.0016904,0.0041787,0.0029881,0.0048445,-0.0047811,-0.0043396,-0.000064,0.0005811,0.000451,-0.0025359
Red_Sea,0.05059585,0.13995270,-0.06513990,-0.11723870,-0.00940130,-0.04997380,-0.01229238,-0.00808298,0.05608075,-0.00410653,0.01556333,-0.03192903,0.06243548,0.00350273,0.00455410,0.0252 5745,-0.02140830,0.00386218,0.00015448,0.02687405,0.0126 3658,0.01614353,-0.00905183,0.00697205,-0.00832413
South_Asian,0.05425723,-0.05224190,-0.14531813,0.10516810,-0.07525927,0.06000990,0.00056697,0.01146813,0.0299 5450,0.01783713,-0.00570163,-0.00016823,-0.00002613,0.00110113,0.00060693,-0.00117137,-0.00384817,0.00066970,0.00074737,-0.00379923,0.00015303,-0.00049060,0.00129760,0.00150510,-0.00206300
East_Asian,0.0228405,-0.4500658,0.0157636,-0.0616123,0.0377711,0.0104956,0.0045003,0.0019692,-0.0076252,0.0085103,-0.0743117,-0.0082078,0.0109439,-0.0060876,-0.0097832,-0.0035115,0.0007954,0.0028991,0.0005762,-0.0085022,0.0219716,-0.0104919,0.006302,0.0019561,-0.029686
Siberian,0.0712675,-0.2597152,0.1261352,0.0402054,-0.1091472,-0.0458827,0.0155505,0.0241736,0.0097942,-0.0172851,0.0686172,0.000534,0.0108821,-0.0619809,-0.021884,-0.0120657,-0.0036925,0.0054333,0.0105948,-0.0042966,0.0016598,0.0204784,0.0340828,-0.0074158,-0.0040206
Amerindian,0.05465673,-0.2968151,0.11224557,0.09128287,-0.10310783,-0.0167784,-0.27070987,-0.3246743,-0.01115723,-0.0149555,-0.0040257,-0.0041421,0.00129253,0.01872977,-0.007696,0.00187773,0.00527263,0.00001203,0.001084 67,-0.0005658,-0.00267273,0.0057964,0.0001209,-0.00068733,-0.0007424
Oceanian,0.0022763,-0.1754325,-0.112099,0.1330765,0.1144828,-0.1776533,-0.0024088,0.0028268,-0.0122203,-0.006424,0.001624,0.002398,-0.0010038,-0.0051265,0.0064468,0.002519,0.0019558,0.004244,0. 0008798,0.0010943,0.005459,-0.0030295,-0.0037283,-0.0006323,-0.0135318
Northeast_African,-0.250373,0.1007068,-0.0300189,-0.079065,0.0019646,-0.0374457,-0.0179234,0.0029613,0.1084522,-0.0707259,-0.0053939,-0.0087547,0.0125445,-0.0000987,0.0233123,-0.0116503,0.0111479,-0.0010306,0.0088868,-0.0006275,0.0026914,0.0061827,-0.0023541,-0.0008012,-0.0029717
Sub-Saharan,-0.6311039,0.0635571,0.0226765,0.0174989,-0.0013447,0.0135755,-0.0428161,0.0470894,-0.0499677,0.0339022,0.0064409,-0.0003355,0.0232072,0.0021097,0.0123351,-0.00956,0.0069119,0.0018716,0.0060435,-0.0032616,0.0009721,0.0017993,-0.0012416,-0.0003636,-0.0006763
Donīt expect get the same % than in original K13, of course.
Scaled.
https://vahaduo.github.io/vahaduo/
I add just 4 group of samples as spacial reference in this PCA, I know also 2 of the references are quite close.
https://i.imgur.com/R3bWe7h.png
North_Atlantic,0.1325593,0.1337507,0.0638800,0.050 8907,0.0394997,0.0199777,0.0031217,0.0057113,0.003 7393,-0.0007613,-0.0054230,0.0055750,-0.0099407,-0.0108430,0.0222443,0.0036457,-0.0109377,0.0022727,0.0024637,0.0005757,0.0058040, 0.0025773,0.0010957,0.0142847,0.0009677
Baltic,0.13419740,0.11830925,0.08826510,0.08638635 ,0.04299255,0.03189105,0.01198555,0.01426095,-0.00087945,-0.03266560,-0.00175390,-0.01308335,0.02134025,0.02636855,-0.00861145,0.00288380,0.00146670,-0.00143170,0.00147695,0.00325795,-0.00070510,-0.00379000,0.00666760,-0.00428965,0.00284405
West_Med,0.12236,0.1655315,0.02357,-0.056525,0.0569335,-0.021614,-0.00705,0.0015,0.0396775,0.0750815,0.000325,0.0173 845,-0.0271305,-0.0114225,-0.0152685,-0.007425,0.0057365,0.0005065,0.004274,-0.0128185,0.004492,0.000309,-0.011462,-0.022473,0.0011975
West_Asian,0.0992254,0.0786815,-0.0200851,-0.0319207,-0.0200989,-0.0106798,0.0050411,-0.0002120,-0.0184973,-0.0010534,-0.0007855,0.0013163,-0.0028215,0.0017155,-0.0041298,0.0000325,0.0029920,0.0011112,0.0018688,-0.0017495,-0.0029590,-0.0000647,-0.0019151,-0.0004425,-0.0000719
East_Med,0.1070315,0.145769,-0.0193374,-0.0508842,0.0045435,-0.0168057,0.0030456,-0.0030695,-0.0026649,0.0147648,0.0034242,0.0017514,-0.0031743,0.0016794,-0.0119076,-0.0016904,0.0041787,0.0029881,0.0048445,-0.0047811,-0.0043396,-0.000064,0.0005811,0.000451,-0.0025359
Red_Sea,0.05059585,0.13995270,-0.06513990,-0.11723870,-0.00940130,-0.04997380,-0.01229238,-0.00808298,0.05608075,-0.00410653,0.01556333,-0.03192903,0.06243548,0.00350273,0.00455410,0.0252 5745,-0.02140830,0.00386218,0.00015448,0.02687405,0.0126 3658,0.01614353,-0.00905183,0.00697205,-0.00832413
South_Asian,0.05425723,-0.05224190,-0.14531813,0.10516810,-0.07525927,0.06000990,0.00056697,0.01146813,0.0299 5450,0.01783713,-0.00570163,-0.00016823,-0.00002613,0.00110113,0.00060693,-0.00117137,-0.00384817,0.00066970,0.00074737,-0.00379923,0.00015303,-0.00049060,0.00129760,0.00150510,-0.00206300
East_Asian,0.0228405,-0.4500658,0.0157636,-0.0616123,0.0377711,0.0104956,0.0045003,0.0019692,-0.0076252,0.0085103,-0.0743117,-0.0082078,0.0109439,-0.0060876,-0.0097832,-0.0035115,0.0007954,0.0028991,0.0005762,-0.0085022,0.0219716,-0.0104919,0.006302,0.0019561,-0.029686
Siberian,0.0712675,-0.2597152,0.1261352,0.0402054,-0.1091472,-0.0458827,0.0155505,0.0241736,0.0097942,-0.0172851,0.0686172,0.000534,0.0108821,-0.0619809,-0.021884,-0.0120657,-0.0036925,0.0054333,0.0105948,-0.0042966,0.0016598,0.0204784,0.0340828,-0.0074158,-0.0040206
Amerindian,0.05465673,-0.2968151,0.11224557,0.09128287,-0.10310783,-0.0167784,-0.27070987,-0.3246743,-0.01115723,-0.0149555,-0.0040257,-0.0041421,0.00129253,0.01872977,-0.007696,0.00187773,0.00527263,0.00001203,0.001084 67,-0.0005658,-0.00267273,0.0057964,0.0001209,-0.00068733,-0.0007424
Oceanian,0.0022763,-0.1754325,-0.112099,0.1330765,0.1144828,-0.1776533,-0.0024088,0.0028268,-0.0122203,-0.006424,0.001624,0.002398,-0.0010038,-0.0051265,0.0064468,0.002519,0.0019558,0.004244,0. 0008798,0.0010943,0.005459,-0.0030295,-0.0037283,-0.0006323,-0.0135318
Northeast_African,-0.250373,0.1007068,-0.0300189,-0.079065,0.0019646,-0.0374457,-0.0179234,0.0029613,0.1084522,-0.0707259,-0.0053939,-0.0087547,0.0125445,-0.0000987,0.0233123,-0.0116503,0.0111479,-0.0010306,0.0088868,-0.0006275,0.0026914,0.0061827,-0.0023541,-0.0008012,-0.0029717
Sub-Saharan,-0.6311039,0.0635571,0.0226765,0.0174989,-0.0013447,0.0135755,-0.0428161,0.0470894,-0.0499677,0.0339022,0.0064409,-0.0003355,0.0232072,0.0021097,0.0123351,-0.00956,0.0069119,0.0018716,0.0060435,-0.0032616,0.0009721,0.0017993,-0.0012416,-0.0003636,-0.0006763