View Full Version : What is wrong with such distances on my K15?
Avgvstvs
06-26-2021, 11:01 PM
Looking at single distances i noticed that my closest population, Tuscan, is at 11 of distance! Seems too much. Is it a bug or somebody can explain the reason of that?https://uploads.tapatalk-cdn.com/20210626/7240226bb6aa1729ca6a7f81bdbc8379.jpg
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Avgvstvs
06-26-2021, 11:19 PM
My K13 has more "normal" distances
Which one is more accurate?https://uploads.tapatalk-cdn.com/20210626/d47e2f16fae5da81dcc472001ecbe129.jpg
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reboun
06-26-2021, 11:23 PM
Seems Eurogenes K13 is more accurate.
Avgvstvs
06-26-2021, 11:25 PM
Seems Eurogenes K13 is more accurate.Yes, but why on K15 distances are so big?
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reboun
06-26-2021, 11:35 PM
Yes, but why on K15 distances are so big?
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I am not sure but each project's dataset might be different from each other. Each ethnicity has some diversity in it and by chance, if Italian samples from K13 is closer to your DNA than you are to Italian samples in K15, this might give such results.
Avgvstvs
06-26-2021, 11:38 PM
I am not sure but each project's dataset might be different from each other. Each ethnicity has some diversity in it and by chance, if Italian samples from K13 is closer to your DNA than you are to Italian samples in K15, this might give such results.Could be.
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Avgvstvs
06-27-2021, 06:57 AM
More opinions to make it clear?
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Lemminkäinen
06-27-2021, 08:20 AM
The data is forced into k groups leading to fitting errors already in the original test. You simply fall between those 15 k groups.
Avgvstvs
06-27-2021, 08:25 AM
The data is forced into k groups leading to fitting errors already in the original test. You simply fall between those 15 k groups.So it's a problem of the calculator? Because K13 makes more sense
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Lemminkäinen
06-27-2021, 08:42 AM
So it's a problem of the calculator? Because K13 makes more sense
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Yes. K15 can be good for someone and k13 for someone else. It depends on whether both you and the population average fit well without high fitting error.
Avgvstvs
06-27-2021, 08:49 AM
Yes. K15 can be good for someone and k13 for someone else. It depends on whether both you and the population average fit well without high fitting error.Thank you for the help
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Dunai
06-27-2021, 09:15 AM
Try K13 Updated calculator on Vahaduo, it's much better than the standard offered by Gedmatch
Ion Basescul
06-27-2021, 10:11 AM
My K13 has more "normal" distances
Which one is more accurate?https://uploads.tapatalk-cdn.com/20210626/d47e2f16fae5da81dcc472001ecbe129.jpg
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K15 is simply worse, there's nothing more to it. I've been saying this for years.
Luke35
06-27-2021, 11:19 AM
It doesn't matter because the bottom line is that on K15 and K13 you match the same populations and in a similar order, more or less. That's much more important.
Avgvstvs
06-27-2021, 11:27 AM
It doesn't matter because the bottom line is that on K15 and K13 you match the same populations and in a similar order, more or less. That's much more important.That for sure, quite similar results
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vbnetkhio
06-27-2021, 11:53 AM
Looking at single distances i noticed that my closest population, Tuscan, is at 11 of distance! Seems too much. Is it a bug or somebody can explain the reason of that?https://uploads.tapatalk-cdn.com/20210626/7240226bb6aa1729ca6a7f81bdbc8379.jpg
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k15 has 2 extra components, so there's more space for individual variation.
e.g this is the Tuscan average in k15
Italy_Tuscany,17.25,20.05,6.52,2.79,20.41,9.07,19. 20,3.54,0.57,0.25,0.02,0.06,0.14,0.08,0.02
and if, for example, your first component is 12 instead of 17, second 25 instead of 20, the third 12 instead of 6, this is still a normal result for a Tuscan, but your distance will be huge.
Avgvstvs
06-27-2021, 11:58 AM
k15 has 2 extra components, so there's more space for individual variation.
e.g this is the Tuscan average in k15
Italy_Tuscany,17.25,20.05,6.52,2.79,20.41,9.07,19. 20,3.54,0.57,0.25,0.02,0.06,0.14,0.08,0.02
and if, for example, your first component is 12 instead of 17, second 25 instead of 20, the third 12 instead of 6, this is still a normal result for a Tuscan, but your distance will be huge.I see
So the reason why K13 has closer results is because it has less components, right?
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vbnetkhio
06-27-2021, 12:09 PM
I see
So the reason why K13 has closer results is because it has less components, right?
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yeah
Petalpusher
06-27-2021, 12:52 PM
I think this is because of the higher North Sea and other subsequent components you get, this is what we were discussing last time. It makes you drift further away from the population avg you would be naturally the closest, when the K13 breakdown with N.Atlantic and Baltic and so on, works better and easily thightens your distance. I also think K13 is a superior calc in most cases.
Avgvstvs
06-27-2021, 12:58 PM
I think this is because of the higher North Sea and other subsequent components you get, this is what we were discussing last time. It makes you drift further away from the population avg you would be naturally the closest, when the K13 breakdown with N.Atlantic and Baltic and so on, works better and easily thightens your distance. I also think K13 is a superior calc in most cases.So also the admixture components are better in K13? Because i still don't know which one i should trust more also regarding west/east med %
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Kaspias
06-27-2021, 01:06 PM
K15 probably being one of the worst calculators of the Gedmatch, is clearly the most overrated one.
Avgvstvs
06-27-2021, 01:18 PM
K15 probably being one of the worst calculators of the Gedmatch, is clearly the most overrated one.Which are some good ones that you'd recommend?
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Kaspias
06-27-2021, 01:28 PM
Which are some good ones that you'd recommend?
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Eurogenes K13 and Dodecad K12b are the top tier. You may also find MDLP World and PuntDNAL K15(works efficiently for Balkanites, did not test for the rest of Europe) interesting. I also like MDLP K23b but it is solely because of it's components, don't really think it's oracles are appropriate for daily usage.
Avgvstvs
06-27-2021, 01:38 PM
Eurogenes K13 and Dodecad K12b are the top tier. You may also find MDLP World and PuntDNAL K15(works efficiently for Balkanites, did not test for the rest of Europe) interesting. I also like MDLP K23b but it is solely because of it's components, don't really think it's oracles are appropriate for daily usage.I am satisfied with K13
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vbnetkhio
06-27-2021, 02:02 PM
Which are some good ones that you'd recommend?
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besides the ones Kasipas mentioned, k36 is also worth checking, simply because it's the only one with a North African and a Fennoscandian component.
Avgvstvs
06-27-2021, 02:04 PM
besides the ones Kasipas mentioned, k36 is also worth checking, simply because it's the only one with a North African and a Fennoscandian component.I checked it, I get none of them[emoji38]
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Looking at single distances i noticed that my closest population, Tuscan, is at 11 of distance! Seems too much. Is it a bug or somebody can explain the reason of that?https://uploads.tapatalk-cdn.com/20210626/7240226bb6aa1729ca6a7f81bdbc8379.jpg
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Generally it’s to be expected. The more the components the greater the distances become because you are comparing more components of each user. That’s why the k36 doesn’t even have oracle. On the other hand the ones with only 3 components like K3 Gedrosia has tiny distances because you’re only comparing 3 components and it becomes hard to differentiate an Albanian from an Italian
Avgvstvs
06-27-2021, 02:32 PM
Generally it’s to be expected. The more the components the greater the distances become because you are comparing more components of each user. That’s why the k36 doesn’t even have oracle. On the other hand the ones with only 3 components like K3 Gedrosia has tiny distances because you’re only comparing 3 components and it becomes hard to differentiate an Albanian from an ItalianI get it now, so it is more precise
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I get it now, so it is more precise
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I’m not sure if precise is the word. I would argue that too many components exaggerate differences between closely related populations whereas too few components line up more with very ancient relationships
Avgvstvs
06-27-2021, 02:44 PM
I’m not sure if precise is the word. I would argue that too many components exaggerate differences between closely related populations whereas too few components line up more with very ancient relationshipsYeah, so would you say K13 is a good intermediate?
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Luke35
06-27-2021, 03:22 PM
Yeah, so would you say K13 is a good intermediate?
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It seems to me K13 is very good for you. And I think that for most Europeans, if you had to pick only one calc, then Eurogenes K13 is a solid choice.
It happens to be that the higher component calcs (K15, K36, G25) seem a little more effective at dividing up my ancestry, but that is very specific to me and my particular mix.
gixajo
06-27-2021, 03:39 PM
Yeah, so would you say K13 is a good intermediate?
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How many SNPs were used in your evaluation?
In both, K13 and K15.
Avgvstvs
06-27-2021, 03:41 PM
How many SNPs were used in your evaluation?
In both, K13 and K15.SNP meaning?
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Original, unupdated oracles are basically useless. Vahaduo is the real deal.
Avgvstvs
06-27-2021, 05:32 PM
Original, unupdated oracles are basically useless. Vahaduo is the real deal.Which calculators of Vahaduo would you suggest?
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Which calculators of Vahaduo would you suggest?
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I agree with Kaspias' take. But sometimes K15 is okay too.
Avgvstvs
06-27-2021, 05:54 PM
I agree with Kaspias' take. But sometimes K15 is okay too.I tried K13 on Vahaduo, and there my top 5 is:
1) Italian_Umbria
2)Italian_Lazio
3)Italian_Marche
4)Italian_Romagna
5)Italian_Tuscan
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gixajo
06-27-2021, 06:39 PM
SNP meaning?
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https://i.imgur.com/gnXu5l8.png
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