The Genomic History of Middle East

[Chaos One]

https://doi.org/10.1016/j.cell.2021.07.013

Just saw it. Quite interesting.

[Leto]

A decent study. Someone could extract the raw data from there.

[Peterski]

They have some Omani samples.

[Lucas]

I saw on Anthrogenica someone created plink dataset for this work but without Oman samples, for unexplained reason...

I managed to convert those samples by myself using vbknethio pipeline again.

There are heterogenous.




oman1,12.03,0,1.87,1.5,1.3,0.91,6.04,8.9,21.11,0,2 3.22,23.11
oman2,21.42,0,2.36,0,7.22,0.88,4.56,4.16,28.05,0.5 3,26.8,4.03
oman3,6.41,0,3.49,1.27,3.7,0,2.55,7.39,39.69,0,31. 58,3.91





https://i.imgur.com/qhv0BPC.jpg

[Peterski]

I saw on Anthrogenica someone created plink dataset for this work but without Oman samples, for unexplained reason...

I managed to convert those samples by myself using vbknethio pipeline again.

There are heterogenous.



Filename Gedrosia Siberian Northwest_African Southeast_Asian Atlantic_Med North_European South_Asian East_African Southwest_Asian East_Asian Caucasus Sub_Saharan
oman_1.txt 12,03 0 1,87 1,5 1,3 0,91 6,04 8,9 21,11 0 23,22 23,11
oman2.txt 21,42 0 2,36 0 7,22 0,88 4,56 4,16 28,05 0,53 26,8 4,03
oman3.txt.txt 6,41 0 3,49 1,27 3,7 0 2,55 7,39 39,69 0 31,58 3,91





https://i.imgur.com/qhv0BPC.jpg

One has high SSA admixture but I've averaged all 3 anyway.

=====

Warning:

I have them numbered as 1, 2 and 3 differently than Lukasz:

Eurogenes K13:


OMAN1.txt,0,0.39,4.93,11.55,40.82,27.73,3.34,1.19, 0,0,0,6.10,3.96
OMAN2.txt,0,1.38,2.01,25.58,33.17,22.72,6.19,0,0.4 6,0.62,0,3.71,4.17
OMAN3.txt,0,0.84,3.63,13.31,27.11,13.54,8.40,1.94, 0,0,0.49,6.64,24.10

Eurogenes K15:


OMAN1,0,0,1.88,0,3.84,10.07,42.25,27.29,3.10,1.15, 0,0,0,7.05,3.38
OMAN2,0,1.31,0.25,4.23,0,18.68,38.04,21.97,6.82,0, 0.15,0.58,0,3.91,4.07
OMAN3,0.77,0.07,1.19,1.23,2.21,10.25,28.82,13.22,8 .54,2.08,0,0,0.36,8.07,23.20