kingmob
02-28-2022, 08:22 AM
snip
I need help to understand this inconsistency between qpAdm and G25, if I am doing something wrong and why is this happening.
I am trying to make a model for Northern Euros (in this case I picked Norwegian for NW and Polish for NE) with the usual groups as references (Barcin for ENF, Yamnaya_EBA_Samara for Steppe, EHG, WHG, etc.), which usually show high distances on g25 as a result of their "drift", but I am running into an inconsistency I can't figure out.
a) Polish:
If I try to model (qpAdm) the Polish reference in the Reich 1240K file as a 2-way Farmer+Steppe, I fail.
On G25, a 3-way model of ENF+Steppe+EHG (ROU_HG_o seems to be preferred out of them all, the HG woman from Gura Baciului) seems to work:
https://i.ibb.co/4m8Rs9g/Screenshot-2022-02-28-at-10-48-38-Vahaduo-Admixture-JS-21-01.png
However, I just can't make this model work, for the life of all, on qpAdm, p-value is just too low. So, what I did, I just started throwing the other components one usually finds in those g25 neolithic calculators, for example, I tried to add Kotias (CHG), the model still failed but the p-value was a bit better.
Then I tried Iran_Ganj_Dareh_N and guess what, the model passed.
qpAdm: parameter file: parqpadm.txt
### THE INPUT PARAMETERS
##PARAMETER NAME: VALUE
fstatsname: fstatsa.txt
popleft: left.txt
popright: right.txt
details: YES
## qpAdm version: 1520
seed: 1641131404
*** recommended that inbreed be explicitly set ***
inbreed set NO
left pops:
Polish.DG
Romania_C_oHG.SG
Turkey_N
Iran_GanjDareh_N
Russia_Samara_EBA_Yamnaya
right pops:
Mbuti.DG
Russia_Ust_Ishim.DG
China_Tianyuan
Goyet_Neanderthal.SG
Russia_Sunghir3.SG
Russia_Kostenki14.SG
Russia_MA1_HG.SG
Georgia_Satsurblia.SG
Russia_DevilsCave_N.SG
Papuan.DG
Switzerland_Bichon.SG
Turkey_Epipaleolithic
Israel_Natufian_published
Russia_Steppe_Eneolithic
ONG.SG
codimension 1
f4info:
f4rank: 3 dof: 11 chisq: 17.102 tail: 0.104881534 dofdiff: 13 chisqdiff: -17.102 taildiff: 1
B:
scale 1.000 1.000 1.000
Russia_Ust_Ishim.DG 0.445 0.216 -0.118
China_Tianyuan 0.168 0.426 0.644
Goyet_Neanderthal.SG 0.128 0.013 -0.069
Russia_Sunghir3.SG 1.154 0.075 0.101
Russia_Kostenki14.SG 0.979 0.171 -0.051
Russia_MA1_HG.SG 0.875 1.636 1.264
Georgia_Satsurblia.SG -0.196 0.660 1.036
Russia_DevilsCave_N.SG 0.319 0.573 0.401
Papuan.DG 0.261 0.474 0.054
Switzerland_Bichon.SG 2.766 0.467 -2.231
Turkey_Epipaleolithic 1.399 -2.249 1.206
Israel_Natufian_published 0.729 -1.648 0.982
Russia_Steppe_Eneolithic 0.515 1.356 1.779
ONG.SG 0.300 0.492 0.394
A:
scale 406.156 668.505 1164.028
Romania_C_oHG.SG 1.041 0.104 -1.032
Turkey_N -0.194 -1.606 0.941
Iran_GanjDareh_N -1.696 0.254 -0.423
Russia_Samara_EBA_Yamnaya 0.049 1.160 1.368
full rank
f4info:
f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 17.102 taildiff: 0.104881534
B:
scale 345.072 386.328 239.557 459.753
Russia_Ust_Ishim.DG 0.325 -0.405 -0.481 0.068
China_Tianyuan 0.483 0.153 0.050 1.192
Goyet_Neanderthal.SG 0.045 -0.135 -0.179 -0.112
Russia_Sunghir3.SG 1.074 -0.210 -1.143 0.258
Russia_Kostenki14.SG 0.917 -0.304 -0.935 0.226
Russia_MA1_HG.SG 0.432 -1.372 -0.889 1.963
Georgia_Satsurblia.SG -0.377 -0.199 0.199 1.192
Russia_DevilsCave_N.SG 0.086 -0.546 -0.381 0.612
Papuan.DG 0.107 -0.559 -0.299 0.338
Switzerland_Bichon.SG 3.261 -1.587 -2.480 -0.555
Turkey_Epipaleolithic 0.805 2.259 -1.697 -0.970
Israel_Natufian_published 0.134 1.646 -1.041 -0.776
Russia_Steppe_Eneolithic 0.003 -0.783 -0.533 2.110
ONG.SG 0.136 -0.424 -0.302 0.614
A:
scale 2.000 2.000 2.000 2.000
Romania_C_oHG.SG 2.000 0.000 0.000 0.000
Turkey_N 0.000 2.000 0.000 0.000
Iran_GanjDareh_N 0.000 0.000 2.000 0.000
Russia_Samara_EBA_Yamnaya 0.000 0.000 0.000 2.000
best coefficients: 0.375 0.207 0.212 0.206
totmean: 0.375 0.207 0.212 0.206
boot mean: 0.376 0.206 0.213 0.205
std. errors: 0.040 0.041 0.050 0.057
error covariance (* 1,000,000)
1631 -1070 922 -1483
-1070 1640 -1110 539
922 -1110 2492 -2304
-1483 539 -2304 3248
summ: Polish.DG 4 0.104882 0.376 0.206 0.213 0.205 1631 -1070 922 -1483 1640 ...
-1110 539 2492 -2304 3248
fixed pat wt dof chisq tail prob
0000 0 11 17.102 0.104882 0.375 0.207 0.212 0.206
0001 1 12 30.653 0.00222438 0.463 0.172 0.365 0.000
0010 1 12 36.071 0.00031563 0.306 0.296 0.000 0.398
0100 1 12 40.436 6.08458e-05 0.514 0.000 0.352 0.134
1000 1 12 125.433 5.07772e-21 0.000 0.441 -0.020 0.579 infeasible
0011 2 13 148.038 5.11936e-25 0.588 0.412 0.000 0.000
0101 2 13 46.028 1.40799e-05 0.559 0.000 0.441 0.000
0110 2 13 98.853 2.76709e-15 0.512 0.000 0.000 0.488
1001 2 13 302.659 0 0.000 0.578 0.422 0.000
1010 2 13 126.545 1.01724e-20 0.000 0.433 0.000 0.567
1100 2 13 313.537 0 0.000 0.000 0.227 0.773
0111 3 14 209.861 0 1.000 0.000 0.000 0.000
1011 3 14 455.310 0 0.000 1.000 0.000 0.000
1101 3 14 513.604 0 0.000 0.000 1.000 0.000
1110 3 14 335.721 0 0.000 0.000 0.000 1.000
best pat: 0000 0.104882 - -
best pat: 0001 0.00222438 chi(nested): 13.551 p-value for nested model: 0.000232179
best pat: 0101 1.40799e-05 chi(nested): 15.375 p-value for nested model: 8.8141e-05
best pat: 0111 5.27931e-37 chi(nested): 163.833 p-value for nested model: 1.6454e-37
coeffs: 0.375 0.207 0.212 0.206
## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)
details: Romania_C_oHG.SG Russia_Ust_Ishim.DG 0.000940 1.583168
details: Turkey_N Russia_Ust_Ishim.DG -0.001048 -2.260677
details: Iran_GanjDareh_N Russia_Ust_Ishim.DG -0.002007 -3.910979
details: Russia_Samara_EBA_Yamnaya Russia_Ust_Ishim.DG 0.000148 0.328579
dscore: Russia_Ust_Ishim.DG f4: -0.000260 Z: -0.575066
details: Romania_C_oHG.SG China_Tianyuan 0.001400 2.135248
details: Turkey_N China_Tianyuan 0.000395 0.872875
details: Iran_GanjDareh_N China_Tianyuan 0.000210 0.399677
details: Russia_Samara_EBA_Yamnaya China_Tianyuan 0.002593 5.562576
dscore: China_Tianyuan f4: 0.001186 Z: 2.516971
details: Romania_C_oHG.SG Goyet_Neanderthal.SG 0.000130 0.314197
details: Turkey_N Goyet_Neanderthal.SG -0.000348 -1.184670
details: Iran_GanjDareh_N Goyet_Neanderthal.SG -0.000747 -1.981697
details: Russia_Samara_EBA_Yamnaya Goyet_Neanderthal.SG -0.000244 -0.801691
dscore: Goyet_Neanderthal.SG f4: -0.000232 Z: -0.778192
details: Romania_C_oHG.SG Russia_Sunghir3.SG 0.003112 4.542899
details: Turkey_N Russia_Sunghir3.SG -0.000544 -1.164524
details: Iran_GanjDareh_N Russia_Sunghir3.SG -0.004772 -8.642566
details: Russia_Samara_EBA_Yamnaya Russia_Sunghir3.SG 0.000561 1.150657
dscore: Russia_Sunghir3.SG f4: 0.000157 Z: 0.321859
details: Romania_C_oHG.SG Russia_Kostenki14.SG 0.002658 4.015735
details: Turkey_N Russia_Kostenki14.SG -0.000788 -1.686101
details: Iran_GanjDareh_N Russia_Kostenki14.SG -0.003904 -7.153503
details: Russia_Samara_EBA_Yamnaya Russia_Kostenki14.SG 0.000492 1.019454
dscore: Russia_Kostenki14.SG f4: 0.000106 Z: 0.220474
details: Romania_C_oHG.SG Russia_MA1_HG.SG 0.001252 1.824334
details: Turkey_N Russia_MA1_HG.SG -0.003552 -7.152978
details: Iran_GanjDareh_N Russia_MA1_HG.SG -0.003713 -6.441282
details: Russia_Samara_EBA_Yamnaya Russia_MA1_HG.SG 0.004270 8.290113
dscore: Russia_MA1_HG.SG f4: -0.000172 Z: -0.342482
details: Romania_C_oHG.SG Georgia_Satsurblia.SG -0.001093 -1.644810
details: Turkey_N Georgia_Satsurblia.SG -0.000516 -1.081904
details: Iran_GanjDareh_N Georgia_Satsurblia.SG 0.000829 1.430305
details: Russia_Samara_EBA_Yamnaya Georgia_Satsurblia.SG 0.002592 5.091084
dscore: Georgia_Satsurblia.SG f4: 0.000194 Z: 0.391098
details: Romania_C_oHG.SG Russia_DevilsCave_N.SG 0.000249 0.440264
details: Turkey_N Russia_DevilsCave_N.SG -0.001414 -3.486939
details: Iran_GanjDareh_N Russia_DevilsCave_N.SG -0.001589 -3.420136
details: Russia_Samara_EBA_Yamnaya Russia_DevilsCave_N.SG 0.001330 3.212109
dscore: Russia_DevilsCave_N.SG f4: -0.000262 Z: -0.627167
details: Romania_C_oHG.SG Papuan.DG 0.000309 0.592382
details: Turkey_N Papuan.DG -0.001447 -3.926295
details: Iran_GanjDareh_N Papuan.DG -0.001247 -3.110886
details: Russia_Samara_EBA_Yamnaya Papuan.DG 0.000735 1.951927
dscore: Papuan.DG f4: -0.000296 Z: -0.794281
details: Romania_C_oHG.SG Switzerland_Bichon.SG 0.009449 12.131678
details: Turkey_N Switzerland_Bichon.SG -0.004107 -8.122881
details: Iran_GanjDareh_N Switzerland_Bichon.SG -0.010353 -18.063777
details: Russia_Samara_EBA_Yamnaya Switzerland_Bichon.SG -0.001207 -2.267904
dscore: Switzerland_Bichon.SG f4: 0.000245 Z: 0.458149
details: Romania_C_oHG.SG Turkey_Epipaleolithic 0.002334 3.456958
details: Turkey_N Turkey_Epipaleolithic 0.005848 11.857288
details: Iran_GanjDareh_N Turkey_Epipaleolithic -0.007083 -12.747328
details: Russia_Samara_EBA_Yamnaya Turkey_Epipaleolithic -0.002110 -4.178519
dscore: Turkey_Epipaleolithic f4: 0.000145 Z: 0.295899
details: Romania_C_oHG.SG Israel_Natufian_published 0.000389 0.531036
details: Turkey_N Israel_Natufian_published 0.004261 8.630648
details: Iran_GanjDareh_N Israel_Natufian_published -0.004344 -7.553265
details: Russia_Samara_EBA_Yamnaya Israel_Natufian_published -0.001688 -3.256873
dscore: Israel_Natufian_published f4: -0.000243 Z: -0.473369
details: Romania_C_oHG.SG Russia_Steppe_Eneolithic 0.000009 0.016211
details: Turkey_N Russia_Steppe_Eneolithic -0.002026 -5.494331
details: Iran_GanjDareh_N Russia_Steppe_Eneolithic -0.002224 -4.909979
details: Russia_Samara_EBA_Yamnaya Russia_Steppe_Eneolithic 0.004589 11.877528
dscore: Russia_Steppe_Eneolithic f4: 0.000059 Z: 0.151501
details: Romania_C_oHG.SG ONG.SG 0.000395 0.794738
details: Turkey_N ONG.SG -0.001097 -3.115849
details: Iran_GanjDareh_N ONG.SG -0.001260 -3.072230
details: Russia_Samara_EBA_Yamnaya ONG.SG 0.001336 3.607552
dscore: ONG.SG f4: -0.000070 Z: -0.196304
gendstat: Mbuti.DG Russia_Ust_Ishim.DG -0.575
gendstat: Mbuti.DG China_Tianyuan 2.517
gendstat: Mbuti.DG Goyet_Neanderthal.SG -0.778
gendstat: Mbuti.DG Russia_Sunghir3.SG 0.322
gendstat: Mbuti.DG Russia_Kostenki14.SG 0.220
gendstat: Mbuti.DG Russia_MA1_HG.SG -0.342
gendstat: Mbuti.DG Georgia_Satsurblia.SG 0.391
gendstat: Mbuti.DG Russia_DevilsCave_N.SG -0.627
gendstat: Mbuti.DG Papuan.DG -0.794
gendstat: Mbuti.DG Switzerland_Bichon.SG 0.458
gendstat: Mbuti.DG Turkey_Epipaleolithic 0.296
gendstat: Mbuti.DG Israel_Natufian_published -0.473
gendstat: Mbuti.DG Russia_Steppe_Eneolithic 0.152
gendstat: Mbuti.DG ONG.SG -0.196
gendstat: Russia_Ust_Ishim.DG China_Tianyuan 2.779
gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG 0.052
gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG 0.738
gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 0.668
gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG 0.157
gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG 0.789
gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG -0.004
gendstat: Russia_Ust_Ishim.DG Papuan.DG -0.077
gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG 0.858
gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic 0.686
gendstat: Russia_Ust_Ishim.DG Israel_Natufian_published 0.027
gendstat: Russia_Ust_Ishim.DG Russia_Steppe_Eneolithic 0.660
gendstat: Russia_Ust_Ishim.DG ONG.SG 0.401
gendstat: China_Tianyuan Goyet_Neanderthal.SG -2.715
gendstat: China_Tianyuan Russia_Sunghir3.SG -1.887
gendstat: China_Tianyuan Russia_Kostenki14.SG -2.004
gendstat: China_Tianyuan Russia_MA1_HG.SG -2.477
gendstat: China_Tianyuan Georgia_Satsurblia.SG -1.775
gendstat: China_Tianyuan Russia_DevilsCave_N.SG -3.385
gendstat: China_Tianyuan Papuan.DG -3.370
gendstat: China_Tianyuan Switzerland_Bichon.SG -1.584
gendstat: China_Tianyuan Turkey_Epipaleolithic -1.823
gendstat: China_Tianyuan Israel_Natufian_published -2.348
gendstat: China_Tianyuan Russia_Steppe_Eneolithic -2.420
gendstat: China_Tianyuan ONG.SG -2.798
gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG 0.708
gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG 0.613
gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG 0.107
gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG 0.743
gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG -0.060
gendstat: Goyet_Neanderthal.SG Papuan.DG -0.142
gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG 0.805
gendstat: Goyet_Neanderthal.SG Turkey_Epipaleolithic 0.677
gendstat: Goyet_Neanderthal.SG Israel_Natufian_published -0.019
gendstat: Goyet_Neanderthal.SG Russia_Steppe_Eneolithic 0.625
gendstat: Goyet_Neanderthal.SG ONG.SG 0.357
gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG -0.095
gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG -0.554
gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG 0.063
gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG -0.789
gendstat: Russia_Sunghir3.SG Papuan.DG -0.881
gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG 0.150
gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic -0.020
gendstat: Russia_Sunghir3.SG Israel_Natufian_published -0.653
gendstat: Russia_Sunghir3.SG Russia_Steppe_Eneolithic -0.201
gendstat: Russia_Sunghir3.SG ONG.SG -0.446
gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.501
gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG 0.154
gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG -0.722
gendstat: Russia_Kostenki14.SG Papuan.DG -0.821
gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 0.235
gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic 0.066
gendstat: Russia_Kostenki14.SG Israel_Natufian_published -0.583
gendstat: Russia_Kostenki14.SG Russia_Steppe_Eneolithic -0.097
gendstat: Russia_Kostenki14.SG ONG.SG -0.377
gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 0.637
gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG -0.176
gendstat: Russia_MA1_HG.SG Papuan.DG -0.243
gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG 0.685
gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic 0.517
gendstat: Russia_MA1_HG.SG Israel_Natufian_published -0.111
gendstat: Russia_MA1_HG.SG Russia_Steppe_Eneolithic 0.502
gendstat: Russia_MA1_HG.SG ONG.SG 0.207
gendstat: Georgia_Satsurblia.SG Russia_DevilsCave_N.SG -0.860
gendstat: Georgia_Satsurblia.SG Papuan.DG -0.967
gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG 0.082
gendstat: Georgia_Satsurblia.SG Turkey_Epipaleolithic -0.083
gendstat: Georgia_Satsurblia.SG Israel_Natufian_published -0.723
gendstat: Georgia_Satsurblia.SG Russia_Steppe_Eneolithic -0.288
gendstat: Georgia_Satsurblia.SG ONG.SG -0.541
gendstat: Russia_DevilsCave_N.SG Papuan.DG -0.092
gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG 0.936
gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic 0.749
gendstat: Russia_DevilsCave_N.SG Israel_Natufian_published 0.033
gendstat: Russia_DevilsCave_N.SG Russia_Steppe_Eneolithic 0.762
gendstat: Russia_DevilsCave_N.SG ONG.SG 0.508
gendstat: Papuan.DG Switzerland_Bichon.SG 0.991
gendstat: Papuan.DG Turkey_Epipaleolithic 0.820
gendstat: Papuan.DG Israel_Natufian_published 0.095
gendstat: Papuan.DG Russia_Steppe_Eneolithic 0.872
gendstat: Papuan.DG ONG.SG 0.652
gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic -0.171
gendstat: Switzerland_Bichon.SG Israel_Natufian_published -0.756
gendstat: Switzerland_Bichon.SG Russia_Steppe_Eneolithic -0.371
gendstat: Switzerland_Bichon.SG ONG.SG -0.575
gendstat: Turkey_Epipaleolithic Israel_Natufian_published -0.627
gendstat: Turkey_Epipaleolithic Russia_Steppe_Eneolithic -0.164
gendstat: Turkey_Epipaleolithic ONG.SG -0.407
gendstat: Israel_Natufian_published Russia_Steppe_Eneolithic 0.552
gendstat: Israel_Natufian_published ONG.SG 0.322
gendstat: Russia_Steppe_Eneolithic ONG.SG -0.321
##end of qpAdm: 25.458 seconds cpu 1.597 Mbytes in use
This model comes up as 20.6% Russia_Samara_EBA_Yamnaya + 21.2% Iran_Ganj_Dareh_N (!!!) + 37.5% Romania_C_oHG + 20.7% Turkey_N.
If I use the .SG file for Turkey_N, the p-value climbs even more.
qpAdm: parameter file: parqpadm.txt
### THE INPUT PARAMETERS
##PARAMETER NAME: VALUE
fstatsname: fstatsa.txt
popleft: left.txt
popright: right.txt
details: YES
## qpAdm version: 1520
seed: 1877493023
*** recommended that inbreed be explicitly set ***
inbreed set NO
left pops:
Polish.DG
Russia_Samara_EBA_Yamnaya
Iran_GanjDareh_N
Romania_C_oHG.SG
Turkey_N.SG
right pops:
Mbuti.DG
Russia_Ust_Ishim.DG
China_Tianyuan
Goyet_Neanderthal.SG
Russia_Sunghir3.SG
Russia_Kostenki14.SG
Russia_MA1_HG.SG
Georgia_Satsurblia.SG
Russia_DevilsCave_N.SG
Papuan.DG
Switzerland_Bichon.SG
Turkey_Epipaleolithic
Israel_Natufian_published
Russia_Steppe_Eneolithic
ONG.SG
codimension 1
f4info:
f4rank: 3 dof: 11 chisq: 13.994 tail: 0.233310199 dofdiff: 13 chisqdiff: -13.994 taildiff: 1
B:
scale 1.000 1.000 1.000
Russia_Ust_Ishim.DG 0.454 0.210 -0.011
China_Tianyuan 0.179 0.653 0.419
Goyet_Neanderthal.SG 0.133 -0.020 0.067
Russia_Sunghir3.SG 1.156 0.033 0.134
Russia_Kostenki14.SG 0.979 0.182 -0.141
Russia_MA1_HG.SG 0.902 1.640 1.204
Georgia_Satsurblia.SG -0.183 0.785 0.948
Russia_DevilsCave_N.SG 0.330 0.552 0.390
Papuan.DG 0.274 0.500 -0.026
Switzerland_Bichon.SG 2.777 0.209 -2.238
Turkey_Epipaleolithic 1.344 -2.250 1.579
Israel_Natufian_published 0.719 -1.285 1.075
Russia_Steppe_Eneolithic 0.541 1.647 1.580
ONG.SG 0.305 0.405 0.361
A:
scale 403.683 664.711 1251.145
Russia_Samara_EBA_Yamnaya 0.047 1.217 1.216
Iran_GanjDareh_N -1.678 0.284 -0.541
Romania_C_oHG.SG 1.046 0.018 -1.145
Turkey_N.SG -0.297 -1.561 0.958
full rank
f4info:
f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 13.994 taildiff: 0.233310199
B:
scale 466.697 240.375 347.014 388.279
Russia_Ust_Ishim.DG 0.143 -0.484 0.317 -0.405
China_Tianyuan 1.220 0.053 0.474 -0.155
Goyet_Neanderthal.SG -0.036 -0.176 0.050 -0.056
Russia_Sunghir3.SG 0.244 -1.141 1.077 -0.265
Russia_Kostenki14.SG 0.155 -0.936 0.908 -0.486
Russia_MA1_HG.SG 1.955 -0.891 0.426 -1.439
Georgia_Satsurblia.SG 1.185 0.197 -0.392 -0.310
Russia_DevilsCave_N.SG 0.584 -0.384 0.079 -0.558
Papuan.DG 0.312 -0.299 0.100 -0.642
Switzerland_Bichon.SG -0.603 -2.481 3.265 -1.625
Turkey_Epipaleolithic -0.987 -1.696 0.797 2.240
Israel_Natufian_published -0.639 -1.040 0.157 1.199
Russia_Steppe_Eneolithic 2.172 -0.528 -0.005 -1.175
ONG.SG 0.526 -0.304 0.135 -0.366
A:
scale 2.000 2.000 2.000 2.000
Russia_Samara_EBA_Yamnaya 2.000 0.000 0.000 0.000
Iran_GanjDareh_N 0.000 2.000 0.000 0.000
Romania_C_oHG.SG 0.000 0.000 2.000 0.000
Turkey_N.SG 0.000 0.000 0.000 2.000
best coefficients: 0.238 0.186 0.352 0.224
totmean: 0.238 0.186 0.352 0.224
boot mean: 0.237 0.187 0.353 0.223
std. errors: 0.059 0.053 0.042 0.043
error covariance (* 1,000,000)
3459 -2576 -1645 762
-2576 2861 1111 -1396
-1645 1111 1743 -1208
762 -1396 -1208 1842
summ: Polish.DG 4 0.233310 0.237 0.187 0.353 0.223 3459 -2576 -1645 762 2861 ...
1111 -1396 1743 -1208 1842
fixed pat wt dof chisq tail prob
0000 0 11 13.994 0.23331 0.238 0.186 0.352 0.224
0001 1 12 39.700 8.06476e-05 0.130 0.359 0.511 0.000
0010 1 12 99.142 8.19709e-16 0.587 -0.057 0.000 0.470 infeasible
0100 1 12 27.928 0.00566747 0.405 0.000 0.283 0.312
1000 1 12 30.093 0.00270408 0.000 0.363 0.464 0.173
0011 2 13 298.628 0 0.812 0.188 0.000 0.000
0101 2 13 97.146 5.91404e-15 0.487 0.000 0.513 0.000
0110 2 13 100.989 1.06664e-15 0.553 0.000 0.000 0.447
1001 2 13 44.039 3.0237e-05 0.000 0.441 0.559 0.000
1010 2 13 270.313 0 0.000 0.371 0.000 0.629
1100 2 13 142.733 5.95925e-24 0.000 0.000 0.549 0.451
0111 3 14 311.872 0 1.000 0.000 0.000 0.000
1011 3 14 513.261 0 0.000 1.000 0.000 0.000
1101 3 14 208.578 0 0.000 0.000 1.000 0.000
1110 3 14 364.357 0 0.000 0.000 0.000 1.000
best pat: 0000 0.23331 - -
best pat: 0100 0.00566747 chi(nested): 13.934 p-value for nested model: 0.000189354
best pat: 1001 3.0237e-05 not nested
best pat: 1101 9.67016e-37 chi(nested): 164.539 p-value for nested model: 1.15336e-37
coeffs: 0.238 0.186 0.352 0.224
## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)
details: Russia_Samara_EBA_Yamnaya Russia_Ust_Ishim.DG 0.000306 0.666044
details: Iran_GanjDareh_N Russia_Ust_Ishim.DG -0.002015 -3.940367
details: Romania_C_oHG.SG Russia_Ust_Ishim.DG 0.000913 1.540800
details: Turkey_N.SG Russia_Ust_Ishim.DG -0.001044 -2.080264
dscore: Russia_Ust_Ishim.DG f4: -0.000215 Z: -0.477482
details: Russia_Samara_EBA_Yamnaya China_Tianyuan 0.002614 5.554787
details: Iran_GanjDareh_N China_Tianyuan 0.000221 0.422187
details: Romania_C_oHG.SG China_Tianyuan 0.001366 2.079688
details: Turkey_N.SG China_Tianyuan -0.000399 -0.812747
dscore: China_Tianyuan f4: 0.001055 Z: 2.262677
details: Russia_Samara_EBA_Yamnaya Goyet_Neanderthal.SG -0.000077 -0.248543
details: Iran_GanjDareh_N Goyet_Neanderthal.SG -0.000731 -1.951361
details: Romania_C_oHG.SG Goyet_Neanderthal.SG 0.000143 0.348163
details: Turkey_N.SG Goyet_Neanderthal.SG -0.000144 -0.437906
dscore: Goyet_Neanderthal.SG f4: -0.000136 Z: -0.462320
details: Russia_Samara_EBA_Yamnaya Russia_Sunghir3.SG 0.000523 1.060170
details: Iran_GanjDareh_N Russia_Sunghir3.SG -0.004746 -8.639014
details: Romania_C_oHG.SG Russia_Sunghir3.SG 0.003103 4.563385
details: Turkey_N.SG Russia_Sunghir3.SG -0.000683 -1.360970
dscore: Russia_Sunghir3.SG f4: 0.000179 Z: 0.375838
details: Russia_Samara_EBA_Yamnaya Russia_Kostenki14.SG 0.000331 0.678802
details: Iran_GanjDareh_N Russia_Kostenki14.SG -0.003894 -7.144501
details: Romania_C_oHG.SG Russia_Kostenki14.SG 0.002616 3.949573
details: Turkey_N.SG Russia_Kostenki14.SG -0.001252 -2.396964
dscore: Russia_Kostenki14.SG f4: -0.000006 Z: -0.012608
details: Russia_Samara_EBA_Yamnaya Russia_MA1_HG.SG 0.004189 8.079111
details: Iran_GanjDareh_N Russia_MA1_HG.SG -0.003707 -6.462379
details: Romania_C_oHG.SG Russia_MA1_HG.SG 0.001229 1.798153
details: Turkey_N.SG Russia_MA1_HG.SG -0.003707 -6.566561
dscore: Russia_MA1_HG.SG f4: -0.000090 Z: -0.178949
details: Russia_Samara_EBA_Yamnaya Georgia_Satsurblia.SG 0.002539 4.946926
details: Iran_GanjDareh_N Georgia_Satsurblia.SG 0.000818 1.413516
details: Romania_C_oHG.SG Georgia_Satsurblia.SG -0.001131 -1.714630
details: Turkey_N.SG Georgia_Satsurblia.SG -0.000799 -1.504574
dscore: Georgia_Satsurblia.SG f4: 0.000181 Z: 0.365345
details: Russia_Samara_EBA_Yamnaya Russia_DevilsCave_N.SG 0.001252 3.006229
details: Iran_GanjDareh_N Russia_DevilsCave_N.SG -0.001596 -3.446708
details: Romania_C_oHG.SG Russia_DevilsCave_N.SG 0.000229 0.405708
details: Turkey_N.SG Russia_DevilsCave_N.SG -0.001438 -3.262127
dscore: Russia_DevilsCave_N.SG f4: -0.000240 Z: -0.582762
details: Russia_Samara_EBA_Yamnaya Papuan.DG 0.000668 1.776786
details: Iran_GanjDareh_N Papuan.DG -0.001245 -3.117499
details: Romania_C_oHG.SG Papuan.DG 0.000287 0.552499
details: Turkey_N.SG Papuan.DG -0.001654 -4.173771
dscore: Papuan.DG f4: -0.000342 Z: -0.928146
details: Russia_Samara_EBA_Yamnaya Switzerland_Bichon.SG -0.001292 -2.408984
details: Iran_GanjDareh_N Switzerland_Bichon.SG -0.010321 -18.040640
details: Romania_C_oHG.SG Switzerland_Bichon.SG 0.009408 12.091976
details: Turkey_N.SG Switzerland_Bichon.SG -0.004186 -7.678698
dscore: Switzerland_Bichon.SG f4: 0.000143 Z: 0.270376
details: Russia_Samara_EBA_Yamnaya Turkey_Epipaleolithic -0.002115 -4.142554
details: Iran_GanjDareh_N Turkey_Epipaleolithic -0.007055 -12.706973
details: Romania_C_oHG.SG Turkey_Epipaleolithic 0.002296 3.414021
details: Turkey_N.SG Turkey_Epipaleolithic 0.005768 10.726726
dscore: Turkey_Epipaleolithic f4: 0.000279 Z: 0.572707
details: Russia_Samara_EBA_Yamnaya Israel_Natufian_published -0.001369 -2.569811
details: Iran_GanjDareh_N Israel_Natufian_published -0.004328 -7.570018
details: Romania_C_oHG.SG Israel_Natufian_published 0.000452 0.617022
details: Turkey_N.SG Israel_Natufian_published 0.003088 5.437693
dscore: Israel_Natufian_published f4: -0.000284 Z: -0.555469
details: Russia_Samara_EBA_Yamnaya Russia_Steppe_Eneolithic 0.004654 11.833528
details: Iran_GanjDareh_N Russia_Steppe_Eneolithic -0.002195 -4.855412
details: Romania_C_oHG.SG Russia_Steppe_Eneolithic -0.000015 -0.028342
details: Turkey_N.SG Russia_Steppe_Eneolithic -0.003027 -7.522610
dscore: Russia_Steppe_Eneolithic f4: 0.000017 Z: 0.044909
details: Russia_Samara_EBA_Yamnaya ONG.SG 0.001126 3.004147
details: Iran_GanjDareh_N ONG.SG -0.001266 -3.098090
details: Romania_C_oHG.SG ONG.SG 0.000390 0.785436
details: Turkey_N.SG ONG.SG -0.000942 -2.350104
dscore: ONG.SG f4: -0.000041 Z: -0.114405
gendstat: Mbuti.DG Russia_Ust_Ishim.DG -0.477
gendstat: Mbuti.DG China_Tianyuan 2.263
gendstat: Mbuti.DG Goyet_Neanderthal.SG -0.462
gendstat: Mbuti.DG Russia_Sunghir3.SG 0.376
gendstat: Mbuti.DG Russia_Kostenki14.SG -0.013
gendstat: Mbuti.DG Russia_MA1_HG.SG -0.179
gendstat: Mbuti.DG Georgia_Satsurblia.SG 0.365
gendstat: Mbuti.DG Russia_DevilsCave_N.SG -0.583
gendstat: Mbuti.DG Papuan.DG -0.928
gendstat: Mbuti.DG Switzerland_Bichon.SG 0.270
gendstat: Mbuti.DG Turkey_Epipaleolithic 0.573
gendstat: Mbuti.DG Israel_Natufian_published -0.555
gendstat: Mbuti.DG Russia_Steppe_Eneolithic 0.045
gendstat: Mbuti.DG ONG.SG -0.114
gendstat: Russia_Ust_Ishim.DG China_Tianyuan 2.458
gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG 0.151
gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG 0.707
gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 0.377
gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG 0.224
gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG 0.689
gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG -0.054
gendstat: Russia_Ust_Ishim.DG Papuan.DG -0.271
gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG 0.613
gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic 0.839
gendstat: Russia_Ust_Ishim.DG Israel_Natufian_published -0.114
gendstat: Russia_Ust_Ishim.DG Russia_Steppe_Eneolithic 0.485
gendstat: Russia_Ust_Ishim.DG ONG.SG 0.371
gendstat: China_Tianyuan Goyet_Neanderthal.SG -2.307
gendstat: China_Tianyuan Russia_Sunghir3.SG -1.615
gendstat: China_Tianyuan Russia_Kostenki14.SG -1.958
gendstat: China_Tianyuan Russia_MA1_HG.SG -2.088
gendstat: China_Tianyuan Georgia_Satsurblia.SG -1.575
gendstat: China_Tianyuan Russia_DevilsCave_N.SG -3.059
gendstat: China_Tianyuan Papuan.DG -3.191
gendstat: China_Tianyuan Switzerland_Bichon.SG -1.553
gendstat: China_Tianyuan Turkey_Epipaleolithic -1.374
gendstat: China_Tianyuan Israel_Natufian_published -2.198
gendstat: China_Tianyuan Russia_Steppe_Eneolithic -2.239
gendstat: China_Tianyuan ONG.SG -2.467
gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG 0.587
gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG 0.237
gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG 0.083
gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG 0.557
gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG -0.213
gendstat: Goyet_Neanderthal.SG Papuan.DG -0.461
gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG 0.478
gendstat: Goyet_Neanderthal.SG Turkey_Epipaleolithic 0.758
gendstat: Goyet_Neanderthal.SG Israel_Natufian_published -0.259
gendstat: Goyet_Neanderthal.SG Russia_Steppe_Eneolithic 0.335
gendstat: Goyet_Neanderthal.SG ONG.SG 0.211
gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG -0.349
gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG -0.453
gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG 0.003
gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG -0.799
gendstat: Russia_Sunghir3.SG Papuan.DG -1.029
gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG -0.061
gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic 0.175
gendstat: Russia_Sunghir3.SG Israel_Natufian_published -0.761
gendstat: Russia_Sunghir3.SG Russia_Steppe_Eneolithic -0.336
gendstat: Russia_Sunghir3.SG ONG.SG -0.437
gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.151
gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG 0.322
gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG -0.461
gendstat: Russia_Kostenki14.SG Papuan.DG -0.683
gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 0.251
gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic 0.486
gendstat: Russia_Kostenki14.SG Israel_Natufian_published -0.462
gendstat: Russia_Kostenki14.SG Russia_Steppe_Eneolithic 0.048
gendstat: Russia_Kostenki14.SG ONG.SG -0.075
gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 0.469
gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG -0.295
gendstat: Russia_MA1_HG.SG Papuan.DG -0.495
gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG 0.382
gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic 0.598
gendstat: Russia_MA1_HG.SG Israel_Natufian_published -0.306
gendstat: Russia_MA1_HG.SG Russia_Steppe_Eneolithic 0.233
gendstat: Russia_MA1_HG.SG ONG.SG 0.099
gendstat: Georgia_Satsurblia.SG Russia_DevilsCave_N.SG -0.800
gendstat: Georgia_Satsurblia.SG Papuan.DG -1.037
gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG -0.061
gendstat: Georgia_Satsurblia.SG Turkey_Epipaleolithic 0.165
gendstat: Georgia_Satsurblia.SG Israel_Natufian_published -0.767
gendstat: Georgia_Satsurblia.SG Russia_Steppe_Eneolithic -0.348
gendstat: Georgia_Satsurblia.SG ONG.SG -0.457
gendstat: Russia_DevilsCave_N.SG Papuan.DG -0.272
gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG 0.713
gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic 0.964
gendstat: Russia_DevilsCave_N.SG Israel_Natufian_published -0.077
gendstat: Russia_DevilsCave_N.SG Russia_Steppe_Eneolithic 0.616
gendstat: Russia_DevilsCave_N.SG ONG.SG 0.531
gendstat: Papuan.DG Switzerland_Bichon.SG 0.899
gendstat: Papuan.DG Turkey_Epipaleolithic 1.159
gendstat: Papuan.DG Israel_Natufian_published 0.105
gendstat: Papuan.DG Russia_Steppe_Eneolithic 0.883
gendstat: Papuan.DG ONG.SG 0.878
gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic 0.235
gendstat: Switzerland_Bichon.SG Israel_Natufian_published -0.666
gendstat: Switzerland_Bichon.SG Russia_Steppe_Eneolithic -0.252
gendstat: Switzerland_Bichon.SG ONG.SG -0.340
gendstat: Turkey_Epipaleolithic Israel_Natufian_published -0.912
gendstat: Turkey_Epipaleolithic Russia_Steppe_Eneolithic -0.500
gendstat: Turkey_Epipaleolithic ONG.SG -0.605
gendstat: Israel_Natufian_published Russia_Steppe_Eneolithic 0.552
gendstat: Israel_Natufian_published ONG.SG 0.454
gendstat: Russia_Steppe_Eneolithic ONG.SG -0.145
##end of qpAdm: 24.955 seconds cpu 1.597 Mbytes in use
However this model on g25 shows nil for Ganj-Dareh_N and the %s are all different.
https://i.ibb.co/gt7YS1P/Screenshot-2022-02-28-at-11-01-44-Vahaduo-Admixture-JS-21-01.png
b) Norwegian:
The model can be succesfull with both WHG and EHG, and also with CHG (around 5%) instead of Iran_N (around 13%ish), however the p-value is quite higher with the latter:
Model1:
qpAdm: parameter file: parqpadm.txt
### THE INPUT PARAMETERS
##PARAMETER NAME: VALUE
fstatsname: fstatsa.txt
popleft: left.txt
popright: right.txt
details: YES
## qpAdm version: 1520
seed: 1639082898
*** recommended that inbreed be explicitly set ***
inbreed set NO
left pops:
Norwegian.DG
Romania_C_oHG.SG
Turkey_N
Iran_GanjDareh_N
Russia_Samara_EBA_Yamnaya
right pops:
Mbuti.DG
Russia_Ust_Ishim.DG
China_Tianyuan
Goyet_Neanderthal.SG
Russia_Sunghir3.SG
Russia_Kostenki14.SG
Russia_MA1_HG.SG
Georgia_Satsurblia.SG
Russia_DevilsCave_N.SG
Papuan.DG
Switzerland_Bichon.SG
Turkey_Epipaleolithic
Israel_Natufian_published
Russia_Steppe_Eneolithic
ONG.SG
codimension 1
f4info:
f4rank: 3 dof: 11 chisq: 7.637 tail: 0.745446152 dofdiff: 13 chisqdiff: -7.637 taildiff: 1
B:
scale 1.000 1.000 1.000
Russia_Ust_Ishim.DG 0.448 0.182 -0.080
China_Tianyuan 0.251 0.422 0.509
Goyet_Neanderthal.SG 0.135 -0.001 -0.097
Russia_Sunghir3.SG 1.151 -0.010 0.054
Russia_Kostenki14.SG 0.984 0.089 -0.143
Russia_MA1_HG.SG 1.085 1.567 1.043
Georgia_Satsurblia.SG -0.078 0.713 0.976
Russia_DevilsCave_N.SG 0.399 0.541 0.393
Papuan.DG 0.296 0.447 0.091
Switzerland_Bichon.SG 2.753 0.227 -2.414
Turkey_Epipaleolithic 1.206 -2.336 1.251
Israel_Natufian_published 0.591 -1.676 1.092
Russia_Steppe_Eneolithic 0.691 1.334 1.678
ONG.SG 0.365 0.481 0.309
A:
scale 391.992 630.981 1173.639
Romania_C_oHG.SG 0.843 -0.403 -1.374
Turkey_N -0.388 -1.776 0.752
Iran_GanjDareh_N -1.772 0.190 -0.574
Russia_Samara_EBA_Yamnaya -0.004 0.804 1.103
full rank
f4info:
f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 7.637 taildiff: 0.745446152
B:
scale 369.240 323.733 223.584 619.378
Russia_Ust_Ishim.DG 0.484 -0.219 -0.366 0.321
China_Tianyuan 0.107 -0.232 -0.201 0.918
Goyet_Neanderthal.SG 0.045 -0.116 -0.169 -0.157
Russia_Sunghir3.SG 1.105 -0.215 -1.094 0.273
Russia_Kostenki14.SG 0.783 -0.429 -0.993 -0.029
Russia_MA1_HG.SG -0.090 -1.634 -1.165 1.718
Georgia_Satsurblia.SG -0.669 -0.400 0.025 1.160
Russia_DevilsCave_N.SG 0.018 -0.522 -0.400 0.700
Papuan.DG 0.176 -0.414 -0.241 0.559
Switzerland_Bichon.SG 3.181 -1.600 -2.502 -1.265
Turkey_Epipaleolithic 1.005 2.019 -1.497 -1.066
Israel_Natufian_published 0.305 1.521 -0.873 -0.775
Russia_Steppe_Eneolithic -0.450 -1.053 -0.772 2.082
ONG.SG -0.095 -0.566 -0.427 0.424
A:
scale 2.000 2.000 2.000 2.000
Romania_C_oHG.SG 2.000 0.000 0.000 0.000
Turkey_N 0.000 2.000 0.000 0.000
Iran_GanjDareh_N 0.000 0.000 2.000 0.000
Russia_Samara_EBA_Yamnaya 0.000 0.000 0.000 2.000
best coefficients: 0.338 0.122 0.133 0.407
totmean: 0.338 0.122 0.133 0.407
boot mean: 0.338 0.121 0.133 0.407
std. errors: 0.042 0.038 0.045 0.053
error covariance (* 1,000,000)
1755 -1070 712 -1397
-1070 1441 -852 481
712 -852 2010 -1870
-1397 481 -1870 2786
summ: Norwegian.DG 4 0.745446 0.338 0.121 0.133 0.407 1755 -1070 712 -1397 1441 ...
-852 481 2010 -1870 2786
fixed pat wt dof chisq tail prob
0000 0 11 7.637 0.745446 0.338 0.122 0.133 0.407
0001 1 12 56.313 1.05119e-07 0.547 0.038 0.415 0.000
0010 1 12 15.551 0.212659 0.295 0.175 0.000 0.529
0100 1 12 17.156 0.143812 0.427 0.000 0.200 0.373
1000 1 12 85.029 4.49379e-13 0.000 0.322 -0.040 0.718 infeasible
0011 2 13 191.798 0 0.800 0.200 0.000 0.000
0101 2 13 57.749 1.32264e-07 0.574 0.000 0.426 0.000
0110 2 13 39.026 0.000198039 0.419 0.000 0.000 0.581
1001 2 13 354.530 0 0.000 0.461 0.539 0.000
1010 2 13 87.094 5.0113e-13 0.000 0.312 0.000 0.688
1100 2 13 203.883 0 0.000 0.000 0.089 0.911
0111 3 14 204.279 0 1.000 0.000 0.000 0.000
1011 3 14 664.220 0 0.000 1.000 0.000 0.000
1101 3 14 537.544 0 0.000 0.000 1.000 0.000
1110 3 14 207.256 0 0.000 0.000 0.000 1.000
best pat: 0000 0.745446 - -
best pat: 0010 0.212659 chi(nested): 7.915 p-value for nested model: 0.00490308
best pat: 0110 0.000198039 chi(nested): 23.475 p-value for nested model: 1.26569e-06
best pat: 0111 7.33054e-36 chi(nested): 165.253 p-value for nested model: 8.05299e-38
coeffs: 0.338 0.122 0.133 0.407
## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)
details: Romania_C_oHG.SG Russia_Ust_Ishim.DG 0.001311 2.164739
details: Turkey_N Russia_Ust_Ishim.DG -0.000678 -1.502570
details: Iran_GanjDareh_N Russia_Ust_Ishim.DG -0.001637 -3.170618
details: Russia_Samara_EBA_Yamnaya Russia_Ust_Ishim.DG 0.000518 1.168462
dscore: Russia_Ust_Ishim.DG f4: 0.000353 Z: 0.792211
details: Romania_C_oHG.SG China_Tianyuan 0.000289 0.453771
details: Turkey_N China_Tianyuan -0.000715 -1.579597
details: Iran_GanjDareh_N China_Tianyuan -0.000901 -1.744290
details: Russia_Samara_EBA_Yamnaya China_Tianyuan 0.001482 3.230454
dscore: China_Tianyuan f4: 0.000494 Z: 1.090206
details: Romania_C_oHG.SG Goyet_Neanderthal.SG 0.000121 0.281713
details: Turkey_N Goyet_Neanderthal.SG -0.000357 -1.146409
details: Iran_GanjDareh_N Goyet_Neanderthal.SG -0.000756 -2.051205
details: Russia_Samara_EBA_Yamnaya Goyet_Neanderthal.SG -0.000253 -0.806146
dscore: Goyet_Neanderthal.SG f4: -0.000207 Z: -0.674260
details: Romania_C_oHG.SG Russia_Sunghir3.SG 0.002992 4.151261
details: Turkey_N Russia_Sunghir3.SG -0.000664 -1.321022
details: Iran_GanjDareh_N Russia_Sunghir3.SG -0.004892 -8.613198
details: Russia_Samara_EBA_Yamnaya Russia_Sunghir3.SG 0.000441 0.890637
dscore: Russia_Sunghir3.SG f4: 0.000458 Z: 0.901897
details: Romania_C_oHG.SG Russia_Kostenki14.SG 0.002120 3.371879
details: Turkey_N Russia_Kostenki14.SG -0.001326 -2.914008
details: Iran_GanjDareh_N Russia_Kostenki14.SG -0.004442 -8.246377
details: Russia_Samara_EBA_Yamnaya Russia_Kostenki14.SG -0.000046 -0.103358
dscore: Russia_Kostenki14.SG f4: -0.000055 Z: -0.124757
details: Romania_C_oHG.SG Russia_MA1_HG.SG -0.000244 -0.353286
details: Turkey_N Russia_MA1_HG.SG -0.005048 -10.246927
details: Iran_GanjDareh_N Russia_MA1_HG.SG -0.005209 -8.825434
details: Russia_Samara_EBA_Yamnaya Russia_MA1_HG.SG 0.002775 5.491511
dscore: Russia_MA1_HG.SG f4: -0.000261 Z: -0.524729
details: Romania_C_oHG.SG Georgia_Satsurblia.SG -0.001811 -2.735914
details: Turkey_N Georgia_Satsurblia.SG -0.001235 -2.571796
details: Iran_GanjDareh_N Georgia_Satsurblia.SG 0.000110 0.193900
details: Russia_Samara_EBA_Yamnaya Georgia_Satsurblia.SG 0.001873 3.744833
dscore: Georgia_Satsurblia.SG f4: 0.000015 Z: 0.030074
details: Romania_C_oHG.SG Russia_DevilsCave_N.SG 0.000049 0.086448
details: Turkey_N Russia_DevilsCave_N.SG -0.001614 -4.016317
details: Iran_GanjDareh_N Russia_DevilsCave_N.SG -0.001788 -3.877527
details: Russia_Samara_EBA_Yamnaya Russia_DevilsCave_N.SG 0.001131 2.752611
dscore: Russia_DevilsCave_N.SG f4: 0.000042 Z: 0.102528
details: Romania_C_oHG.SG Papuan.DG 0.000476 0.962982
details: Turkey_N Papuan.DG -0.001279 -3.710294
details: Iran_GanjDareh_N Papuan.DG -0.001080 -2.609812
details: Russia_Samara_EBA_Yamnaya Papuan.DG 0.000902 2.494626
dscore: Papuan.DG f4: 0.000228 Z: 0.650389
details: Romania_C_oHG.SG Switzerland_Bichon.SG 0.008614 10.853485
details: Turkey_N Switzerland_Bichon.SG -0.004942 -9.294499
details: Iran_GanjDareh_N Switzerland_Bichon.SG -0.011188 -18.796544
details: Russia_Samara_EBA_Yamnaya Switzerland_Bichon.SG -0.002042 -3.648974
dscore: Switzerland_Bichon.SG f4: -0.000013 Z: -0.023490
details: Romania_C_oHG.SG Turkey_Epipaleolithic 0.002722 4.090180
details: Turkey_N Turkey_Epipaleolithic 0.006237 13.190740
details: Iran_GanjDareh_N Turkey_Epipaleolithic -0.006694 -12.606872
details: Russia_Samara_EBA_Yamnaya Turkey_Epipaleolithic -0.001721 -3.580302
dscore: Turkey_Epipaleolithic f4: 0.000089 Z: 0.190811
details: Romania_C_oHG.SG Israel_Natufian_published 0.000827 1.156395
details: Turkey_N Israel_Natufian_published 0.004699 9.382068
details: Iran_GanjDareh_N Israel_Natufian_published -0.003907 -6.688765
details: Russia_Samara_EBA_Yamnaya Israel_Natufian_published -0.001251 -2.464489
dscore: Israel_Natufian_published f4: -0.000177 Z: -0.353996
details: Romania_C_oHG.SG Russia_Steppe_Eneolithic -0.001219 -2.461080
details: Turkey_N Russia_Steppe_Eneolithic -0.003254 -8.639605
details: Iran_GanjDareh_N Russia_Steppe_Eneolithic -0.003452 -8.220420
details: Russia_Samara_EBA_Yamnaya Russia_Steppe_Eneolithic 0.003361 8.831271
dscore: Russia_Steppe_Eneolithic f4: 0.000100 Z: 0.277342
details: Romania_C_oHG.SG ONG.SG -0.000256 -0.493982
details: Turkey_N ONG.SG -0.001748 -5.030381
details: Iran_GanjDareh_N ONG.SG -0.001911 -4.596268
details: Russia_Samara_EBA_Yamnaya ONG.SG 0.000685 1.856787
dscore: ONG.SG f4: -0.000275 Z: -0.751147
gendstat: Mbuti.DG Russia_Ust_Ishim.DG 0.792
gendstat: Mbuti.DG China_Tianyuan 1.090
gendstat: Mbuti.DG Goyet_Neanderthal.SG -0.674
gendstat: Mbuti.DG Russia_Sunghir3.SG 0.902
gendstat: Mbuti.DG Russia_Kostenki14.SG -0.125
gendstat: Mbuti.DG Russia_MA1_HG.SG -0.525
gendstat: Mbuti.DG Georgia_Satsurblia.SG 0.030
gendstat: Mbuti.DG Russia_DevilsCave_N.SG 0.103
gendstat: Mbuti.DG Papuan.DG 0.650
gendstat: Mbuti.DG Switzerland_Bichon.SG -0.023
gendstat: Mbuti.DG Turkey_Epipaleolithic 0.191
gendstat: Mbuti.DG Israel_Natufian_published -0.354
gendstat: Mbuti.DG Russia_Steppe_Eneolithic 0.277
gendstat: Mbuti.DG ONG.SG -0.751
gendstat: Russia_Ust_Ishim.DG China_Tianyuan 0.273
gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG -1.056
gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG 0.189
gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG -0.757
gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG -1.112
gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG -0.597
gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG -0.647
gendstat: Russia_Ust_Ishim.DG Papuan.DG -0.282
gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG -0.628
gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic -0.486
gendstat: Russia_Ust_Ishim.DG Israel_Natufian_published -0.913
gendstat: Russia_Ust_Ishim.DG Russia_Steppe_Eneolithic -0.549
gendstat: Russia_Ust_Ishim.DG ONG.SG -1.420
gendstat: China_Tianyuan Goyet_Neanderthal.SG -1.343
gendstat: China_Tianyuan Russia_Sunghir3.SG -0.063
gendstat: China_Tianyuan Russia_Kostenki14.SG -1.042
gendstat: China_Tianyuan Russia_MA1_HG.SG -1.326
gendstat: China_Tianyuan Georgia_Satsurblia.SG -0.850
gendstat: China_Tianyuan Russia_DevilsCave_N.SG -1.041
gendstat: China_Tianyuan Papuan.DG -0.634
gendstat: China_Tianyuan Switzerland_Bichon.SG -0.803
gendstat: China_Tianyuan Turkey_Epipaleolithic -0.730
gendstat: China_Tianyuan Israel_Natufian_published -1.116
gendstat: China_Tianyuan Russia_Steppe_Eneolithic -0.825
gendstat: China_Tianyuan ONG.SG -1.761
gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG 1.149
gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG 0.281
gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG -0.095
gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG 0.395
gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG 0.479
gendstat: Goyet_Neanderthal.SG Papuan.DG 0.944
gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG 0.312
gendstat: Goyet_Neanderthal.SG Turkey_Epipaleolithic 0.550
gendstat: Goyet_Neanderthal.SG Israel_Natufian_published 0.052
gendstat: Goyet_Neanderthal.SG Russia_Steppe_Eneolithic 0.649
gendstat: Goyet_Neanderthal.SG ONG.SG -0.148
gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG -0.992
gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG -1.263
gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG -0.785
gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG -0.770
gendstat: Russia_Sunghir3.SG Papuan.DG -0.469
gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG -0.795
gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic -0.658
gendstat: Russia_Sunghir3.SG Israel_Natufian_published -1.013
gendstat: Russia_Sunghir3.SG Russia_Steppe_Eneolithic -0.713
gendstat: Russia_Sunghir3.SG ONG.SG -1.529
gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.394
gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG 0.125
gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG 0.195
gendstat: Russia_Kostenki14.SG Papuan.DG 0.632
gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 0.073
gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic 0.256
gendstat: Russia_Kostenki14.SG Israel_Natufian_published -0.204
gendstat: Russia_Kostenki14.SG Russia_Steppe_Eneolithic 0.337
gendstat: Russia_Kostenki14.SG ONG.SG -0.477
gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 0.487
gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG 0.570
gendstat: Russia_MA1_HG.SG Papuan.DG 0.982
gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG 0.414
gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic 0.595
gendstat: Russia_MA1_HG.SG Israel_Natufian_published 0.135
gendstat: Russia_MA1_HG.SG Russia_Steppe_Eneolithic 0.802
gendstat: Russia_MA1_HG.SG ONG.SG -0.028
gendstat: Georgia_Satsurblia.SG Russia_DevilsCave_N.SG 0.052
gendstat: Georgia_Satsurblia.SG Papuan.DG 0.427
gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG -0.044
gendstat: Georgia_Satsurblia.SG Turkey_Epipaleolithic 0.130
gendstat: Georgia_Satsurblia.SG Israel_Natufian_published -0.320
gendstat: Georgia_Satsurblia.SG Russia_Steppe_Eneolithic 0.183
gendstat: Georgia_Satsurblia.SG ONG.SG -0.600
gendstat: Russia_DevilsCave_N.SG Papuan.DG 0.495
gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -0.096
gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic 0.088
gendstat: Russia_DevilsCave_N.SG Israel_Natufian_published -0.392
gendstat: Russia_DevilsCave_N.SG Russia_Steppe_Eneolithic 0.136
gendstat: Russia_DevilsCave_N.SG ONG.SG -0.855
gendstat: Papuan.DG Switzerland_Bichon.SG -0.436
gendstat: Papuan.DG Turkey_Epipaleolithic -0.284
gendstat: Papuan.DG Israel_Natufian_published -0.785
gendstat: Papuan.DG Russia_Steppe_Eneolithic -0.334
gendstat: Papuan.DG ONG.SG -1.538
gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic 0.168
gendstat: Switzerland_Bichon.SG Israel_Natufian_published -0.251
gendstat: Switzerland_Bichon.SG Russia_Steppe_Eneolithic 0.212
gendstat: Switzerland_Bichon.SG ONG.SG -0.485
gendstat: Turkey_Epipaleolithic Israel_Natufian_published -0.455
gendstat: Turkey_Epipaleolithic Russia_Steppe_Eneolithic 0.024
gendstat: Turkey_Epipaleolithic ONG.SG -0.758
gendstat: Israel_Natufian_published Russia_Steppe_Eneolithic 0.530
gendstat: Israel_Natufian_published ONG.SG -0.187
gendstat: Russia_Steppe_Eneolithic ONG.SG -0.990
##end of qpAdm: 25.172 seconds cpu 1.597 Mbytes in use
Model2:
qpAdm: parameter file: parqpadm.txt
### THE INPUT PARAMETERS
##PARAMETER NAME: VALUE
fstatsname: fstatsa.txt
popleft: left.txt
popright: right.txt
details: YES
## qpAdm version: 1520
seed: 1851625456
*** recommended that inbreed be explicitly set ***
inbreed set NO
left pops:
Norwegian.DG
Croatia_Mesolithic_HG
Turkey_N
Iran_GanjDareh_N
Russia_Samara_EBA_Yamnaya
right pops:
Mbuti.DG
Russia_Ust_Ishim.DG
China_Tianyuan
Goyet_Neanderthal.SG
Russia_Sunghir3.SG
Russia_Kostenki14.SG
Russia_MA1_HG.SG
Georgia_Satsurblia.SG
Russia_DevilsCave_N.SG
Papuan.DG
Switzerland_Bichon.SG
Turkey_Epipaleolithic
Israel_Natufian_published
Russia_Steppe_Eneolithic
ONG.SG
codimension 1
f4info:
f4rank: 3 dof: 11 chisq: 14.849 tail: 0.189498283 dofdiff: 13 chisqdiff: -14.849 taildiff: 1
B:
scale 1.000 1.000 1.000
Russia_Ust_Ishim.DG 0.337 0.171 0.215
China_Tianyuan 0.248 0.410 0.343
Goyet_Neanderthal.SG 0.088 0.001 0.027
Russia_Sunghir3.SG 1.188 -0.052 0.033
Russia_Kostenki14.SG 0.810 0.066 0.304
Russia_MA1_HG.SG 0.713 1.525 1.473
Georgia_Satsurblia.SG -0.258 0.714 1.022
Russia_DevilsCave_N.SG 0.304 0.526 0.460
Papuan.DG 0.287 0.436 0.118
Switzerland_Bichon.SG 3.149 0.175 -2.124
Turkey_Epipaleolithic 0.756 -2.375 1.567
Israel_Natufian_published 0.430 -1.712 0.891
Russia_Steppe_Eneolithic 0.482 1.292 1.554
ONG.SG 0.306 0.472 0.352
A:
scale 276.573 646.383 862.202
Croatia_Mesolithic_HG 1.535 -0.099 -1.345
Turkey_N -0.313 -1.790 0.327
Iran_GanjDareh_N -1.243 0.302 -1.197
Russia_Samara_EBA_Yamnaya -0.015 0.833 0.807
full rank
f4info:
f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 14.849 taildiff: 0.189498283
B:
scale 164.124 323.733 223.584 619.378
Russia_Ust_Ishim.DG 0.281 -0.219 -0.366 0.321
China_Tianyuan 0.259 -0.232 -0.201 0.918
Goyet_Neanderthal.SG 0.004 -0.116 -0.169 -0.157
Russia_Sunghir3.SG 1.171 -0.215 -1.094 0.273
Russia_Kostenki14.SG 0.582 -0.429 -0.993 -0.029
Russia_MA1_HG.SG 0.120 -1.634 -1.165 1.718
Georgia_Satsurblia.SG -0.529 -0.400 0.025 1.160
Russia_DevilsCave_N.SG 0.153 -0.522 -0.400 0.700
Papuan.DG 0.258 -0.414 -0.241 0.559
Switzerland_Bichon.SG 3.403 -1.600 -2.502 -1.265
Turkey_Epipaleolithic 0.319 2.019 -1.497 -1.066
Israel_Natufian_published 0.250 1.521 -0.873 -0.775
Russia_Steppe_Eneolithic 0.069 -1.053 -0.772 2.082
ONG.SG 0.118 -0.566 -0.427 0.424
A:
scale 2.000 2.000 2.000 2.000
Croatia_Mesolithic_HG 2.000 0.000 0.000 0.000
Turkey_N 0.000 2.000 0.000 0.000
Iran_GanjDareh_N 0.000 0.000 2.000 0.000
Russia_Samara_EBA_Yamnaya 0.000 0.000 0.000 2.000
best coefficients: 0.178 0.222 0.158 0.441
totmean: 0.178 0.222 0.158 0.441
boot mean: 0.178 0.222 0.158 0.442
std. errors: 0.022 0.030 0.047 0.052
error covariance (* 1,000,000)
483 -283 494 -693
-283 892 -671 62
494 -671 2199 -2022
-693 62 -2022 2653
summ: Norwegian.DG 4 0.189498 0.178 0.222 0.158 0.442 483 -283 494 -693 892 ...
-671 62 2199 -2022 2653
fixed pat wt dof chisq tail prob
0000 0 11 14.849 0.189498 0.178 0.222 0.158 0.441
0001 1 12 80.295 3.62622e-12 0.290 0.215 0.496 0.000
0010 1 12 25.982 0.010797 0.145 0.270 0.000 0.584
0100 1 12 63.527 5.09724e-09 0.242 0.000 0.313 0.445
1000 1 12 84.768 5.04403e-13 0.000 0.323 -0.049 0.726 infeasible
0011 2 13 338.525 0 0.358 0.642 0.000 0.000
0101 2 13 118.298 4.36462e-19 0.349 0.000 0.651 0.000
0110 2 13 111.086 1.14434e-17 0.197 0.000 0.000 0.803
1001 2 13 354.553 0 0.000 0.463 0.537 0.000
1010 2 13 85.845 8.66065e-13 0.000 0.313 0.000 0.687
1100 2 13 203.370 0 0.000 0.000 0.102 0.898
0111 3 14 711.260 0 1.000 0.000 0.000 0.000
1011 3 14 663.526 0 0.000 1.000 0.000 0.000
1101 3 14 537.182 0 0.000 0.000 1.000 0.000
1110 3 14 206.956 0 0.000 0.000 0.000 1.000
best pat: 0000 0.189498 - -
best pat: 0010 0.010797 chi(nested): 11.133 p-value for nested model: 0.000848214
best pat: 1010 8.66065e-13 chi(nested): 59.863 p-value for nested model: 1.01712e-14
best pat: 1110 2.07767e-36 chi(nested): 121.111 p-value for nested model: 3.61343e-28
coeffs: 0.178 0.222 0.158 0.441
## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)
details: Croatia_Mesolithic_HG Russia_Ust_Ishim.DG 0.001709 2.521699
details: Turkey_N Russia_Ust_Ishim.DG -0.000678 -1.502570
details: Iran_GanjDareh_N Russia_Ust_Ishim.DG -0.001637 -3.170618
details: Russia_Samara_EBA_Yamnaya Russia_Ust_Ishim.DG 0.000518 1.168462
dscore: Russia_Ust_Ishim.DG f4: 0.000123 Z: 0.284891
details: Croatia_Mesolithic_HG China_Tianyuan 0.001580 2.172472
details: Turkey_N China_Tianyuan -0.000715 -1.579597
details: Iran_GanjDareh_N China_Tianyuan -0.000901 -1.744290
details: Russia_Samara_EBA_Yamnaya China_Tianyuan 0.001482 3.230454
dscore: China_Tianyuan f4: 0.000634 Z: 1.432967
details: Croatia_Mesolithic_HG Goyet_Neanderthal.SG 0.000025 0.045305
details: Turkey_N Goyet_Neanderthal.SG -0.000357 -1.146409
details: Iran_GanjDareh_N Goyet_Neanderthal.SG -0.000756 -2.051205
details: Russia_Samara_EBA_Yamnaya Goyet_Neanderthal.SG -0.000253 -0.806146
dscore: Goyet_Neanderthal.SG f4: -0.000307 Z: -1.010984
details: Croatia_Mesolithic_HG Russia_Sunghir3.SG 0.007132 8.744520
details: Turkey_N Russia_Sunghir3.SG -0.000664 -1.321022
details: Iran_GanjDareh_N Russia_Sunghir3.SG -0.004892 -8.613198
details: Russia_Samara_EBA_Yamnaya Russia_Sunghir3.SG 0.000441 0.890637
dscore: Russia_Sunghir3.SG f4: 0.000541 Z: 1.110070
details: Croatia_Mesolithic_HG Russia_Kostenki14.SG 0.003548 4.817840
details: Turkey_N Russia_Kostenki14.SG -0.001326 -2.914008
details: Iran_GanjDareh_N Russia_Kostenki14.SG -0.004442 -8.246377
details: Russia_Samara_EBA_Yamnaya Russia_Kostenki14.SG -0.000046 -0.103358
dscore: Russia_Kostenki14.SG f4: -0.000387 Z: -0.889593
details: Croatia_Mesolithic_HG Russia_MA1_HG.SG 0.000733 0.904218
details: Turkey_N Russia_MA1_HG.SG -0.005048 -10.246927
details: Iran_GanjDareh_N Russia_MA1_HG.SG -0.005209 -8.825434
details: Russia_Samara_EBA_Yamnaya Russia_MA1_HG.SG 0.002775 5.491511
dscore: Russia_MA1_HG.SG f4: -0.000591 Z: -1.210927
details: Croatia_Mesolithic_HG Georgia_Satsurblia.SG -0.003226 -4.142601
details: Turkey_N Georgia_Satsurblia.SG -0.001235 -2.571796
details: Iran_GanjDareh_N Georgia_Satsurblia.SG 0.000110 0.193900
details: Russia_Samara_EBA_Yamnaya Georgia_Satsurblia.SG 0.001873 3.744833
dscore: Georgia_Satsurblia.SG f4: -0.000004 Z: -0.008429
details: Croatia_Mesolithic_HG Russia_DevilsCave_N.SG 0.000934 1.478841
details: Turkey_N Russia_DevilsCave_N.SG -0.001614 -4.016317
details: Iran_GanjDareh_N Russia_DevilsCave_N.SG -0.001788 -3.877527
details: Russia_Samara_EBA_Yamnaya Russia_DevilsCave_N.SG 0.001131 2.752611
dscore: Russia_DevilsCave_N.SG f4: 0.000024 Z: 0.059974
details: Croatia_Mesolithic_HG Papuan.DG 0.001572 2.844178
details: Turkey_N Papuan.DG -0.001279 -3.710294
details: Iran_GanjDareh_N Papuan.DG -0.001080 -2.609812
details: Russia_Samara_EBA_Yamnaya Papuan.DG 0.000902 2.494626
dscore: Papuan.DG f4: 0.000223 Z: 0.645817
details: Croatia_Mesolithic_HG Switzerland_Bichon.SG 0.020731 22.553918
details: Turkey_N Switzerland_Bichon.SG -0.004942 -9.294499
details: Iran_GanjDareh_N Switzerland_Bichon.SG -0.011188 -18.796544
details: Russia_Samara_EBA_Yamnaya Switzerland_Bichon.SG -0.002042 -3.648974
dscore: Switzerland_Bichon.SG f4: -0.000083 Z: -0.153144
details: Croatia_Mesolithic_HG Turkey_Epipaleolithic 0.001943 2.662668
details: Turkey_N Turkey_Epipaleolithic 0.006237 13.190740
details: Iran_GanjDareh_N Turkey_Epipaleolithic -0.006694 -12.606872
details: Russia_Samara_EBA_Yamnaya Turkey_Epipaleolithic -0.001721 -3.580302
dscore: Turkey_Epipaleolithic f4: -0.000089 Z: -0.198396
details: Croatia_Mesolithic_HG Israel_Natufian_published 0.001525 1.758414
details: Turkey_N Israel_Natufian_published 0.004699 9.382068
details: Iran_GanjDareh_N Israel_Natufian_published -0.003907 -6.688765
details: Russia_Samara_EBA_Yamnaya Israel_Natufian_published -0.001251 -2.464489
dscore: Israel_Natufian_published f4: 0.000144 Z: 0.298386
details: Croatia_Mesolithic_HG Russia_Steppe_Eneolithic 0.000421 0.725279
details: Turkey_N Russia_Steppe_Eneolithic -0.003254 -8.639605
details: Iran_GanjDareh_N Russia_Steppe_Eneolithic -0.003452 -8.220420
details: Russia_Samara_EBA_Yamnaya Russia_Steppe_Eneolithic 0.003361 8.831271
dscore: Russia_Steppe_Eneolithic f4: 0.000289 Z: 0.812747
details: Croatia_Mesolithic_HG ONG.SG 0.000721 1.253620
details: Turkey_N ONG.SG -0.001748 -5.030381
details: Iran_GanjDareh_N ONG.SG -0.001911 -4.596268
details: Russia_Samara_EBA_Yamnaya ONG.SG 0.000685 1.856787
dscore: ONG.SG f4: -0.000260 Z: -0.748523
gendstat: Mbuti.DG Russia_Ust_Ishim.DG 0.285
gendstat: Mbuti.DG China_Tianyuan 1.433
gendstat: Mbuti.DG Goyet_Neanderthal.SG -1.011
gendstat: Mbuti.DG Russia_Sunghir3.SG 1.110
gendstat: Mbuti.DG Russia_Kostenki14.SG -0.890
gendstat: Mbuti.DG Russia_MA1_HG.SG -1.211
gendstat: Mbuti.DG Georgia_Satsurblia.SG -0.008
gendstat: Mbuti.DG Russia_DevilsCave_N.SG 0.060
gendstat: Mbuti.DG Papuan.DG 0.646
gendstat: Mbuti.DG Switzerland_Bichon.SG -0.153
gendstat: Mbuti.DG Turkey_Epipaleolithic -0.198
gendstat: Mbuti.DG Israel_Natufian_published 0.298
gendstat: Mbuti.DG Russia_Steppe_Eneolithic 0.813
gendstat: Mbuti.DG ONG.SG -0.749
gendstat: Russia_Ust_Ishim.DG China_Tianyuan 1.033
gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG -0.847
gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG 0.785
gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG -0.996
gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG -1.353
gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG -0.234
gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG -0.213
gendstat: Russia_Ust_Ishim.DG Papuan.DG 0.236
gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG -0.364
gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic -0.400
gendstat: Russia_Ust_Ishim.DG Israel_Natufian_published 0.037
gendstat: Russia_Ust_Ishim.DG Russia_Steppe_Eneolithic 0.378
gendstat: Russia_Ust_Ishim.DG ONG.SG -0.887
gendstat: China_Tianyuan Goyet_Neanderthal.SG -1.859
gendstat: China_Tianyuan Russia_Sunghir3.SG -0.166
gendstat: China_Tianyuan Russia_Kostenki14.SG -1.975
gendstat: China_Tianyuan Russia_MA1_HG.SG -2.211
gendstat: China_Tianyuan Georgia_Satsurblia.SG -1.143
gendstat: China_Tianyuan Russia_DevilsCave_N.SG -1.438
gendstat: China_Tianyuan Papuan.DG -0.986
gendstat: China_Tianyuan Switzerland_Bichon.SG -1.187
gendstat: China_Tianyuan Turkey_Epipaleolithic -1.304
gendstat: China_Tianyuan Israel_Natufian_published -0.852
gendstat: China_Tianyuan Russia_Steppe_Eneolithic -0.736
gendstat: China_Tianyuan ONG.SG -2.110
gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG 1.529
gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG -0.156
gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG -0.502
gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG 0.546
gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG 0.661
gendstat: Goyet_Neanderthal.SG Papuan.DG 1.169
gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG 0.375
gendstat: Goyet_Neanderthal.SG Turkey_Epipaleolithic 0.424
gendstat: Goyet_Neanderthal.SG Israel_Natufian_published 0.823
gendstat: Goyet_Neanderthal.SG Russia_Steppe_Eneolithic 1.306
gendstat: Goyet_Neanderthal.SG ONG.SG 0.104
gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG -1.813
gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG -2.042
gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG -0.970
gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG -0.993
gendstat: Russia_Sunghir3.SG Papuan.DG -0.673
gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG -1.071
gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic -1.163
gendstat: Russia_Sunghir3.SG Israel_Natufian_published -0.638
gendstat: Russia_Sunghir3.SG Russia_Steppe_Eneolithic -0.511
gendstat: Russia_Sunghir3.SG ONG.SG -1.714
gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.389
gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG 0.702
gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG 0.852
gendstat: Russia_Kostenki14.SG Papuan.DG 1.394
gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 0.542
gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic 0.554
gendstat: Russia_Kostenki14.SG Israel_Natufian_published 0.913
gendstat: Russia_Kostenki14.SG Russia_Steppe_Eneolithic 1.520
gendstat: Russia_Kostenki14.SG ONG.SG 0.287
gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 1.060
gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG 1.195
gendstat: Russia_MA1_HG.SG Papuan.DG 1.666
gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG 0.856
gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic 0.885
gendstat: Russia_MA1_HG.SG Israel_Natufian_published 1.211
gendstat: Russia_MA1_HG.SG Russia_Steppe_Eneolithic 1.968
gendstat: Russia_MA1_HG.SG ONG.SG 0.709
gendstat: Georgia_Satsurblia.SG Russia_DevilsCave_N.SG 0.053
gendstat: Georgia_Satsurblia.SG Papuan.DG 0.459
gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG -0.128
gendstat: Georgia_Satsurblia.SG Turkey_Epipaleolithic -0.149
gendstat: Georgia_Satsurblia.SG Israel_Natufian_published 0.251
gendstat: Georgia_Satsurblia.SG Russia_Steppe_Eneolithic 0.634
gendstat: Georgia_Satsurblia.SG ONG.SG -0.529
gendstat: Russia_DevilsCave_N.SG Papuan.DG 0.533
gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -0.192
gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic -0.220
gendstat: Russia_DevilsCave_N.SG Israel_Natufian_published 0.219
gendstat: Russia_DevilsCave_N.SG Russia_Steppe_Eneolithic 0.646
gendstat: Russia_DevilsCave_N.SG ONG.SG -0.766
gendstat: Papuan.DG Switzerland_Bichon.SG -0.567
gendstat: Papuan.DG Turkey_Epipaleolithic -0.643
gendstat: Papuan.DG Israel_Natufian_published -0.155
gendstat: Papuan.DG Russia_Steppe_Eneolithic 0.177
gendstat: Papuan.DG ONG.SG -1.532
gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic -0.010
gendstat: Switzerland_Bichon.SG Israel_Natufian_published 0.359
gendstat: Switzerland_Bichon.SG Russia_Steppe_Eneolithic 0.719
gendstat: Switzerland_Bichon.SG ONG.SG -0.340
gendstat: Turkey_Epipaleolithic Israel_Natufian_published 0.406
gendstat: Turkey_Epipaleolithic Russia_Steppe_Eneolithic 0.786
gendstat: Turkey_Epipaleolithic ONG.SG -0.363
gendstat: Israel_Natufian_published Russia_Steppe_Eneolithic 0.282
gendstat: Israel_Natufian_published ONG.SG -0.775
gendstat: Russia_Steppe_Eneolithic ONG.SG -1.486
##end of qpAdm: 25.298 seconds cpu 1.597 Mbytes in use
Model3:
qpAdm: parameter file: parqpadm.txt
### THE INPUT PARAMETERS
##PARAMETER NAME: VALUE
fstatsname: fstatsa.txt
popleft: left.txt
popright: right.txt
details: YES
## qpAdm version: 1520
seed: 1852199286
*** recommended that inbreed be explicitly set ***
inbreed set NO
left pops:
Norwegian.DG
Romania_C_oHG.SG
Turkey_N
Georgia_Kotias.SG
Russia_Samara_EBA_Yamnaya
right pops:
Mbuti.DG
Russia_Ust_Ishim.DG
China_Tianyuan
Goyet_Neanderthal.SG
Russia_Sunghir3.SG
Russia_Kostenki14.SG
Russia_MA1_HG.SG
Georgia_Satsurblia.SG
Russia_DevilsCave_N.SG
Papuan.DG
Switzerland_Bichon.SG
Turkey_Epipaleolithic
Israel_Natufian_published
Russia_Steppe_Eneolithic
ONG.SG
codimension 1
f4info:
f4rank: 3 dof: 11 chisq: 12.942 tail: 0.297165253 dofdiff: 13 chisqdiff: -12.942 taildiff: 1
B:
scale 1.000 1.000 1.000
Russia_Ust_Ishim.DG 0.309 0.306 -0.052
China_Tianyuan 0.145 0.438 0.758
Goyet_Neanderthal.SG 0.098 0.044 -0.134
Russia_Sunghir3.SG 0.748 0.301 -0.250
Russia_Kostenki14.SG 0.766 0.341 -0.165
Russia_MA1_HG.SG 0.651 1.713 1.614
Georgia_Satsurblia.SG -2.182 0.848 -1.403
Russia_DevilsCave_N.SG 0.035 0.617 0.326
Papuan.DG 0.214 0.487 0.332
Switzerland_Bichon.SG 2.452 0.999 -2.345
Turkey_Epipaleolithic 0.983 -1.932 0.105
Israel_Natufian_published 0.693 -1.489 0.568
Russia_Steppe_Eneolithic -0.093 1.413 1.582
ONG.SG 0.164 0.541 0.437
A:
scale 426.547 602.803 1181.924
Romania_C_oHG.SG 0.857 0.043 -1.440
Turkey_N -0.251 -1.909 0.405
Georgia_Kotias.SG -1.765 0.055 -0.933
Russia_Samara_EBA_Yamnaya -0.293 0.594 0.944
full rank
f4info:
f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 12.942 taildiff: 0.297165253
B:
scale 369.240 323.733 243.968 619.378
Russia_Ust_Ishim.DG 0.484 -0.219 -0.208 0.321
China_Tianyuan 0.107 -0.232 -0.172 0.918
Goyet_Neanderthal.SG 0.045 -0.116 -0.112 -0.157
Russia_Sunghir3.SG 1.105 -0.215 -0.534 0.273
Russia_Kostenki14.SG 0.783 -0.429 -0.698 -0.029
Russia_MA1_HG.SG -0.090 -1.634 -0.883 1.718
Georgia_Satsurblia.SG -0.669 -0.400 2.684 1.160
Russia_DevilsCave_N.SG 0.018 -0.522 -0.036 0.700
Papuan.DG 0.176 -0.414 -0.220 0.559
Switzerland_Bichon.SG 3.181 -1.600 -1.904 -1.265
Turkey_Epipaleolithic 1.005 2.019 -0.878 -1.066
Israel_Natufian_published 0.305 1.521 -0.795 -0.775
Russia_Steppe_Eneolithic -0.450 -1.053 -0.025 2.082
ONG.SG -0.095 -0.566 -0.288 0.424
A:
scale 2.000 2.000 2.000 2.000
Romania_C_oHG.SG 2.000 0.000 0.000 0.000
Turkey_N 0.000 2.000 0.000 0.000
Georgia_Kotias.SG 0.000 0.000 2.000 0.000
Russia_Samara_EBA_Yamnaya 0.000 0.000 0.000 2.000
best coefficients: 0.318 0.156 0.054 0.472
totmean: 0.318 0.156 0.054 0.472
boot mean: 0.319 0.155 0.054 0.472
std. errors: 0.042 0.035 0.034 0.050
error covariance (* 1,000,000)
1789 -971 536 -1354
-971 1227 -414 159
536 -414 1175 -1297
-1354 159 -1297 2492
summ: Norwegian.DG 4 0.297165 0.319 0.155 0.054 0.472 1789 -971 536 -1354 1227 ...
-414 159 1175 -1297 2492
fixed pat wt dof chisq tail prob
0000 0 11 12.942 0.297165 0.318 0.156 0.054 0.472
0001 1 12 84.968 4.61621e-13 0.575 0.110 0.315 0.000
0010 1 12 15.457 0.217402 0.295 0.175 0.000 0.530
0100 1 12 30.517 0.00233279 0.440 0.000 0.102 0.458
1000 1 12 82.497 1.37556e-12 0.000 0.322 -0.059 0.737 infeasible
0011 2 13 190.670 0 0.797 0.203 0.000 0.000
0101 2 13 90.049 1.36762e-13 0.659 0.000 0.341 0.000
0110 2 13 38.951 0.000203578 0.421 0.000 0.000 0.579
1001 2 13 360.727 0 0.000 0.458 0.542 0.000
1010 2 13 86.067 7.85775e-13 0.000 0.313 0.000 0.687
1100 2 13 207.117 0 0.000 0.000 -0.034 1.034 infeasible
0111 3 14 203.509 0 1.000 0.000 0.000 0.000
1011 3 14 663.352 0 0.000 1.000 0.000 0.000
1101 3 14 457.217 0 0.000 0.000 1.000 0.000
1110 3 14 206.772 0 0.000 0.000 0.000 1.000
best pat: 0000 0.297165 - -
best pat: 0010 0.217402 chi(nested): 2.515 p-value for nested model: 0.11275
best pat: 0110 0.000203578 chi(nested): 23.494 p-value for nested model: 1.2529e-06
best pat: 0111 1.05384e-35 chi(nested): 164.558 p-value for nested model: 1.14275e-37
coeffs: 0.318 0.156 0.054 0.472
## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)
details: Romania_C_oHG.SG Russia_Ust_Ishim.DG 0.001311 2.164739
details: Turkey_N Russia_Ust_Ishim.DG -0.000678 -1.502570
details: Georgia_Kotias.SG Russia_Ust_Ishim.DG -0.000854 -1.427329
details: Russia_Samara_EBA_Yamnaya Russia_Ust_Ishim.DG 0.000518 1.168462
dscore: Russia_Ust_Ishim.DG f4: 0.000510 Z: 1.153537
details: Romania_C_oHG.SG China_Tianyuan 0.000289 0.453771
details: Turkey_N China_Tianyuan -0.000715 -1.579597
details: Georgia_Kotias.SG China_Tianyuan -0.000704 -1.082388
details: Russia_Samara_EBA_Yamnaya China_Tianyuan 0.001482 3.230454
dscore: China_Tianyuan f4: 0.000643 Z: 1.422555
details: Romania_C_oHG.SG Goyet_Neanderthal.SG 0.000121 0.281713
details: Turkey_N Goyet_Neanderthal.SG -0.000357 -1.146409
details: Georgia_Kotias.SG Goyet_Neanderthal.SG -0.000458 -1.087974
details: Russia_Samara_EBA_Yamnaya Goyet_Neanderthal.SG -0.000253 -0.806146
dscore: Goyet_Neanderthal.SG f4: -0.000162 Z: -0.528749
details: Romania_C_oHG.SG Russia_Sunghir3.SG 0.002992 4.151261
details: Turkey_N Russia_Sunghir3.SG -0.000664 -1.321022
details: Georgia_Kotias.SG Russia_Sunghir3.SG -0.002188 -3.280526
details: Russia_Samara_EBA_Yamnaya Russia_Sunghir3.SG 0.000441 0.890637
dscore: Russia_Sunghir3.SG f4: 0.000939 Z: 1.857743
details: Romania_C_oHG.SG Russia_Kostenki14.SG 0.002120 3.371879
details: Turkey_N Russia_Kostenki14.SG -0.001326 -2.914008
details: Georgia_Kotias.SG Russia_Kostenki14.SG -0.002861 -4.314401
details: Russia_Samara_EBA_Yamnaya Russia_Kostenki14.SG -0.000046 -0.103358
dscore: Russia_Kostenki14.SG f4: 0.000292 Z: 0.661412
details: Romania_C_oHG.SG Russia_MA1_HG.SG -0.000244 -0.353286
details: Turkey_N Russia_MA1_HG.SG -0.005048 -10.246927
details: Georgia_Kotias.SG Russia_MA1_HG.SG -0.003618 -4.916632
details: Russia_Samara_EBA_Yamnaya Russia_MA1_HG.SG 0.002775 5.491511
dscore: Russia_MA1_HG.SG f4: 0.000252 Z: 0.507413
details: Romania_C_oHG.SG Georgia_Satsurblia.SG -0.001811 -2.735914
details: Turkey_N Georgia_Satsurblia.SG -0.001235 -2.571796
details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.011001 14.398318
details: Russia_Samara_EBA_Yamnaya Georgia_Satsurblia.SG 0.001873 3.744833
dscore: Georgia_Satsurblia.SG f4: 0.000709 Z: 1.457294
details: Romania_C_oHG.SG Russia_DevilsCave_N.SG 0.000049 0.086448
details: Turkey_N Russia_DevilsCave_N.SG -0.001614 -4.016317
details: Georgia_Kotias.SG Russia_DevilsCave_N.SG -0.000146 -0.262647
details: Russia_Samara_EBA_Yamnaya Russia_DevilsCave_N.SG 0.001131 2.752611
dscore: Russia_DevilsCave_N.SG f4: 0.000291 Z: 0.706542
details: Romania_C_oHG.SG Papuan.DG 0.000476 0.962982
details: Turkey_N Papuan.DG -0.001279 -3.710294
details: Georgia_Kotias.SG Papuan.DG -0.000903 -1.820487
details: Russia_Samara_EBA_Yamnaya Papuan.DG 0.000902 2.494626
dscore: Papuan.DG f4: 0.000330 Z: 0.944758
details: Romania_C_oHG.SG Switzerland_Bichon.SG 0.008614 10.853485
details: Turkey_N Switzerland_Bichon.SG -0.004942 -9.294499
details: Georgia_Kotias.SG Switzerland_Bichon.SG -0.007805 -10.591408
details: Russia_Samara_EBA_Yamnaya Switzerland_Bichon.SG -0.002042 -3.648974
dscore: Switzerland_Bichon.SG f4: 0.000587 Z: 1.057615
details: Romania_C_oHG.SG Turkey_Epipaleolithic 0.002722 4.090180
details: Turkey_N Turkey_Epipaleolithic 0.006237 13.190740
details: Georgia_Kotias.SG Turkey_Epipaleolithic -0.003597 -5.466038
details: Russia_Samara_EBA_Yamnaya Turkey_Epipaleolithic -0.001721 -3.580302
dscore: Turkey_Epipaleolithic f4: 0.000830 Z: 1.788079
details: Romania_C_oHG.SG Israel_Natufian_published 0.000827 1.156395
details: Turkey_N Israel_Natufian_published 0.004699 9.382068
details: Georgia_Kotias.SG Israel_Natufian_published -0.003257 -4.363810
details: Russia_Samara_EBA_Yamnaya Israel_Natufian_published -0.001251 -2.464489
dscore: Israel_Natufian_published f4: 0.000228 Z: 0.456507
details: Romania_C_oHG.SG Russia_Steppe_Eneolithic -0.001219 -2.461080
details: Turkey_N Russia_Steppe_Eneolithic -0.003254 -8.639605
details: Georgia_Kotias.SG Russia_Steppe_Eneolithic -0.000104 -0.192020
details: Russia_Samara_EBA_Yamnaya Russia_Steppe_Eneolithic 0.003361 8.831271
dscore: Russia_Steppe_Eneolithic f4: 0.000687 Z: 1.882107
details: Romania_C_oHG.SG ONG.SG -0.000256 -0.493982
details: Turkey_N ONG.SG -0.001748 -5.030381
details: Georgia_Kotias.SG ONG.SG -0.001181 -2.255744
details: Russia_Samara_EBA_Yamnaya ONG.SG 0.000685 1.856787
dscore: ONG.SG f4: -0.000094 Z: -0.256032
gendstat: Mbuti.DG Russia_Ust_Ishim.DG 1.154
gendstat: Mbuti.DG China_Tianyuan 1.423
gendstat: Mbuti.DG Goyet_Neanderthal.SG -0.529
gendstat: Mbuti.DG Russia_Sunghir3.SG 1.858
gendstat: Mbuti.DG Russia_Kostenki14.SG 0.661
gendstat: Mbuti.DG Russia_MA1_HG.SG 0.507
gendstat: Mbuti.DG Georgia_Satsurblia.SG 1.457
gendstat: Mbuti.DG Russia_DevilsCave_N.SG 0.707
gendstat: Mbuti.DG Papuan.DG 0.945
gendstat: Mbuti.DG Switzerland_Bichon.SG 1.058
gendstat: Mbuti.DG Turkey_Epipaleolithic 1.788
gendstat: Mbuti.DG Israel_Natufian_published 0.457
gendstat: Mbuti.DG Russia_Steppe_Eneolithic 1.882
gendstat: Mbuti.DG ONG.SG -0.256
gendstat: Russia_Ust_Ishim.DG China_Tianyuan 0.258
gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG -1.278
gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG 0.778
gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG -0.406
gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG -0.471
gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG 0.352
gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG -0.460
gendstat: Russia_Ust_Ishim.DG Papuan.DG -0.409
gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG 0.132
gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic 0.592
gendstat: Russia_Ust_Ishim.DG Israel_Natufian_published -0.489
gendstat: Russia_Ust_Ishim.DG Russia_Steppe_Eneolithic 0.386
gendstat: Russia_Ust_Ishim.DG ONG.SG -1.369
gendstat: China_Tianyuan Goyet_Neanderthal.SG -1.547
gendstat: China_Tianyuan Russia_Sunghir3.SG 0.521
gendstat: China_Tianyuan Russia_Kostenki14.SG -0.667
gendstat: China_Tianyuan Russia_MA1_HG.SG -0.686
gendstat: China_Tianyuan Georgia_Satsurblia.SG 0.118
gendstat: China_Tianyuan Russia_DevilsCave_N.SG -0.810
gendstat: China_Tianyuan Papuan.DG -0.750
gendstat: China_Tianyuan Switzerland_Bichon.SG -0.088
gendstat: China_Tianyuan Turkey_Epipaleolithic 0.338
gendstat: China_Tianyuan Israel_Natufian_published -0.695
gendstat: China_Tianyuan Russia_Steppe_Eneolithic 0.094
gendstat: China_Tianyuan ONG.SG -1.689
gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG 1.907
gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG 0.847
gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG 0.714
gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG 1.553
gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG 0.873
gendstat: Goyet_Neanderthal.SG Papuan.DG 1.070
gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG 1.207
gendstat: Goyet_Neanderthal.SG Turkey_Epipaleolithic 1.855
gendstat: Goyet_Neanderthal.SG Israel_Natufian_published 0.680
gendstat: Goyet_Neanderthal.SG Russia_Steppe_Eneolithic 1.788
gendstat: Goyet_Neanderthal.SG ONG.SG 0.147
gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG -1.251
gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG -1.220
gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG -0.408
gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG -1.204
gendstat: Russia_Sunghir3.SG Papuan.DG -1.248
gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG -0.594
gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic -0.195
gendstat: Russia_Sunghir3.SG Israel_Natufian_published -1.139
gendstat: Russia_Sunghir3.SG Russia_Steppe_Eneolithic -0.505
gendstat: Russia_Sunghir3.SG ONG.SG -2.157
gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.077
gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG 0.749
gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG -0.003
gendstat: Russia_Kostenki14.SG Papuan.DG 0.084
gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 0.509
gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic 0.964
gendstat: Russia_Kostenki14.SG Israel_Natufian_published -0.109
gendstat: Russia_Kostenki14.SG Russia_Steppe_Eneolithic 0.856
gendstat: Russia_Kostenki14.SG ONG.SG -0.838
gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 0.813
gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG 0.073
gendstat: Russia_MA1_HG.SG Papuan.DG 0.156
gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG 0.562
gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic 0.988
gendstat: Russia_MA1_HG.SG Israel_Natufian_published -0.039
gendstat: Russia_MA1_HG.SG Russia_Steppe_Eneolithic 0.974
gendstat: Russia_MA1_HG.SG ONG.SG -0.723
gendstat: Georgia_Satsurblia.SG Russia_DevilsCave_N.SG -0.787
gendstat: Georgia_Satsurblia.SG Papuan.DG -0.761
gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG -0.191
gendstat: Georgia_Satsurblia.SG Turkey_Epipaleolithic 0.212
gendstat: Georgia_Satsurblia.SG Israel_Natufian_published -0.803
gendstat: Georgia_Satsurblia.SG Russia_Steppe_Eneolithic -0.046
gendstat: Georgia_Satsurblia.SG ONG.SG -1.666
gendstat: Russia_DevilsCave_N.SG Papuan.DG 0.104
gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG 0.519
gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic 1.021
gendstat: Russia_DevilsCave_N.SG Israel_Natufian_published -0.113
gendstat: Russia_DevilsCave_N.SG Russia_Steppe_Eneolithic 0.936
gendstat: Russia_DevilsCave_N.SG ONG.SG -1.033
gendstat: Papuan.DG Switzerland_Bichon.SG 0.465
gendstat: Papuan.DG Turkey_Epipaleolithic 1.017
gendstat: Papuan.DG Israel_Natufian_published -0.199
gendstat: Papuan.DG Russia_Steppe_Eneolithic 0.935
gendstat: Papuan.DG ONG.SG -1.290
gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic 0.403
gendstat: Switzerland_Bichon.SG Israel_Natufian_published -0.556
gendstat: Switzerland_Bichon.SG Russia_Steppe_Eneolithic 0.187
gendstat: Switzerland_Bichon.SG ONG.SG -1.270
gendstat: Turkey_Epipaleolithic Israel_Natufian_published -1.035
gendstat: Turkey_Epipaleolithic Russia_Steppe_Eneolithic -0.291
gendstat: Turkey_Epipaleolithic ONG.SG -1.925
gendstat: Israel_Natufian_published Russia_Steppe_Eneolithic 0.888
gendstat: Israel_Natufian_published ONG.SG -0.613
gendstat: Russia_Steppe_Eneolithic ONG.SG -2.064
##end of qpAdm: 24.984 seconds cpu 1.597 Mbytes in use
In g25, Norwegian show nil preference for Ganj_Dareh and Kotias, and the %s are also completely different:
https://i.ibb.co/9pXNXpv/Screenshot-2022-02-28-at-11-14-02-Vahaduo-Admixture-JS-21-01.png
https://i.ibb.co/5hx5764/Screenshot-2022-02-28-at-11-15-22-Vahaduo-Admixture-JS-21-01.png
Concluding thoughts:
Why is this happening? Do Northern Euros really score Iran_N or is it a stand-in for something else?
Opinions greatly appreciated.
I need help to understand this inconsistency between qpAdm and G25, if I am doing something wrong and why is this happening.
I am trying to make a model for Northern Euros (in this case I picked Norwegian for NW and Polish for NE) with the usual groups as references (Barcin for ENF, Yamnaya_EBA_Samara for Steppe, EHG, WHG, etc.), which usually show high distances on g25 as a result of their "drift", but I am running into an inconsistency I can't figure out.
a) Polish:
If I try to model (qpAdm) the Polish reference in the Reich 1240K file as a 2-way Farmer+Steppe, I fail.
On G25, a 3-way model of ENF+Steppe+EHG (ROU_HG_o seems to be preferred out of them all, the HG woman from Gura Baciului) seems to work:
https://i.ibb.co/4m8Rs9g/Screenshot-2022-02-28-at-10-48-38-Vahaduo-Admixture-JS-21-01.png
However, I just can't make this model work, for the life of all, on qpAdm, p-value is just too low. So, what I did, I just started throwing the other components one usually finds in those g25 neolithic calculators, for example, I tried to add Kotias (CHG), the model still failed but the p-value was a bit better.
Then I tried Iran_Ganj_Dareh_N and guess what, the model passed.
qpAdm: parameter file: parqpadm.txt
### THE INPUT PARAMETERS
##PARAMETER NAME: VALUE
fstatsname: fstatsa.txt
popleft: left.txt
popright: right.txt
details: YES
## qpAdm version: 1520
seed: 1641131404
*** recommended that inbreed be explicitly set ***
inbreed set NO
left pops:
Polish.DG
Romania_C_oHG.SG
Turkey_N
Iran_GanjDareh_N
Russia_Samara_EBA_Yamnaya
right pops:
Mbuti.DG
Russia_Ust_Ishim.DG
China_Tianyuan
Goyet_Neanderthal.SG
Russia_Sunghir3.SG
Russia_Kostenki14.SG
Russia_MA1_HG.SG
Georgia_Satsurblia.SG
Russia_DevilsCave_N.SG
Papuan.DG
Switzerland_Bichon.SG
Turkey_Epipaleolithic
Israel_Natufian_published
Russia_Steppe_Eneolithic
ONG.SG
codimension 1
f4info:
f4rank: 3 dof: 11 chisq: 17.102 tail: 0.104881534 dofdiff: 13 chisqdiff: -17.102 taildiff: 1
B:
scale 1.000 1.000 1.000
Russia_Ust_Ishim.DG 0.445 0.216 -0.118
China_Tianyuan 0.168 0.426 0.644
Goyet_Neanderthal.SG 0.128 0.013 -0.069
Russia_Sunghir3.SG 1.154 0.075 0.101
Russia_Kostenki14.SG 0.979 0.171 -0.051
Russia_MA1_HG.SG 0.875 1.636 1.264
Georgia_Satsurblia.SG -0.196 0.660 1.036
Russia_DevilsCave_N.SG 0.319 0.573 0.401
Papuan.DG 0.261 0.474 0.054
Switzerland_Bichon.SG 2.766 0.467 -2.231
Turkey_Epipaleolithic 1.399 -2.249 1.206
Israel_Natufian_published 0.729 -1.648 0.982
Russia_Steppe_Eneolithic 0.515 1.356 1.779
ONG.SG 0.300 0.492 0.394
A:
scale 406.156 668.505 1164.028
Romania_C_oHG.SG 1.041 0.104 -1.032
Turkey_N -0.194 -1.606 0.941
Iran_GanjDareh_N -1.696 0.254 -0.423
Russia_Samara_EBA_Yamnaya 0.049 1.160 1.368
full rank
f4info:
f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 17.102 taildiff: 0.104881534
B:
scale 345.072 386.328 239.557 459.753
Russia_Ust_Ishim.DG 0.325 -0.405 -0.481 0.068
China_Tianyuan 0.483 0.153 0.050 1.192
Goyet_Neanderthal.SG 0.045 -0.135 -0.179 -0.112
Russia_Sunghir3.SG 1.074 -0.210 -1.143 0.258
Russia_Kostenki14.SG 0.917 -0.304 -0.935 0.226
Russia_MA1_HG.SG 0.432 -1.372 -0.889 1.963
Georgia_Satsurblia.SG -0.377 -0.199 0.199 1.192
Russia_DevilsCave_N.SG 0.086 -0.546 -0.381 0.612
Papuan.DG 0.107 -0.559 -0.299 0.338
Switzerland_Bichon.SG 3.261 -1.587 -2.480 -0.555
Turkey_Epipaleolithic 0.805 2.259 -1.697 -0.970
Israel_Natufian_published 0.134 1.646 -1.041 -0.776
Russia_Steppe_Eneolithic 0.003 -0.783 -0.533 2.110
ONG.SG 0.136 -0.424 -0.302 0.614
A:
scale 2.000 2.000 2.000 2.000
Romania_C_oHG.SG 2.000 0.000 0.000 0.000
Turkey_N 0.000 2.000 0.000 0.000
Iran_GanjDareh_N 0.000 0.000 2.000 0.000
Russia_Samara_EBA_Yamnaya 0.000 0.000 0.000 2.000
best coefficients: 0.375 0.207 0.212 0.206
totmean: 0.375 0.207 0.212 0.206
boot mean: 0.376 0.206 0.213 0.205
std. errors: 0.040 0.041 0.050 0.057
error covariance (* 1,000,000)
1631 -1070 922 -1483
-1070 1640 -1110 539
922 -1110 2492 -2304
-1483 539 -2304 3248
summ: Polish.DG 4 0.104882 0.376 0.206 0.213 0.205 1631 -1070 922 -1483 1640 ...
-1110 539 2492 -2304 3248
fixed pat wt dof chisq tail prob
0000 0 11 17.102 0.104882 0.375 0.207 0.212 0.206
0001 1 12 30.653 0.00222438 0.463 0.172 0.365 0.000
0010 1 12 36.071 0.00031563 0.306 0.296 0.000 0.398
0100 1 12 40.436 6.08458e-05 0.514 0.000 0.352 0.134
1000 1 12 125.433 5.07772e-21 0.000 0.441 -0.020 0.579 infeasible
0011 2 13 148.038 5.11936e-25 0.588 0.412 0.000 0.000
0101 2 13 46.028 1.40799e-05 0.559 0.000 0.441 0.000
0110 2 13 98.853 2.76709e-15 0.512 0.000 0.000 0.488
1001 2 13 302.659 0 0.000 0.578 0.422 0.000
1010 2 13 126.545 1.01724e-20 0.000 0.433 0.000 0.567
1100 2 13 313.537 0 0.000 0.000 0.227 0.773
0111 3 14 209.861 0 1.000 0.000 0.000 0.000
1011 3 14 455.310 0 0.000 1.000 0.000 0.000
1101 3 14 513.604 0 0.000 0.000 1.000 0.000
1110 3 14 335.721 0 0.000 0.000 0.000 1.000
best pat: 0000 0.104882 - -
best pat: 0001 0.00222438 chi(nested): 13.551 p-value for nested model: 0.000232179
best pat: 0101 1.40799e-05 chi(nested): 15.375 p-value for nested model: 8.8141e-05
best pat: 0111 5.27931e-37 chi(nested): 163.833 p-value for nested model: 1.6454e-37
coeffs: 0.375 0.207 0.212 0.206
## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)
details: Romania_C_oHG.SG Russia_Ust_Ishim.DG 0.000940 1.583168
details: Turkey_N Russia_Ust_Ishim.DG -0.001048 -2.260677
details: Iran_GanjDareh_N Russia_Ust_Ishim.DG -0.002007 -3.910979
details: Russia_Samara_EBA_Yamnaya Russia_Ust_Ishim.DG 0.000148 0.328579
dscore: Russia_Ust_Ishim.DG f4: -0.000260 Z: -0.575066
details: Romania_C_oHG.SG China_Tianyuan 0.001400 2.135248
details: Turkey_N China_Tianyuan 0.000395 0.872875
details: Iran_GanjDareh_N China_Tianyuan 0.000210 0.399677
details: Russia_Samara_EBA_Yamnaya China_Tianyuan 0.002593 5.562576
dscore: China_Tianyuan f4: 0.001186 Z: 2.516971
details: Romania_C_oHG.SG Goyet_Neanderthal.SG 0.000130 0.314197
details: Turkey_N Goyet_Neanderthal.SG -0.000348 -1.184670
details: Iran_GanjDareh_N Goyet_Neanderthal.SG -0.000747 -1.981697
details: Russia_Samara_EBA_Yamnaya Goyet_Neanderthal.SG -0.000244 -0.801691
dscore: Goyet_Neanderthal.SG f4: -0.000232 Z: -0.778192
details: Romania_C_oHG.SG Russia_Sunghir3.SG 0.003112 4.542899
details: Turkey_N Russia_Sunghir3.SG -0.000544 -1.164524
details: Iran_GanjDareh_N Russia_Sunghir3.SG -0.004772 -8.642566
details: Russia_Samara_EBA_Yamnaya Russia_Sunghir3.SG 0.000561 1.150657
dscore: Russia_Sunghir3.SG f4: 0.000157 Z: 0.321859
details: Romania_C_oHG.SG Russia_Kostenki14.SG 0.002658 4.015735
details: Turkey_N Russia_Kostenki14.SG -0.000788 -1.686101
details: Iran_GanjDareh_N Russia_Kostenki14.SG -0.003904 -7.153503
details: Russia_Samara_EBA_Yamnaya Russia_Kostenki14.SG 0.000492 1.019454
dscore: Russia_Kostenki14.SG f4: 0.000106 Z: 0.220474
details: Romania_C_oHG.SG Russia_MA1_HG.SG 0.001252 1.824334
details: Turkey_N Russia_MA1_HG.SG -0.003552 -7.152978
details: Iran_GanjDareh_N Russia_MA1_HG.SG -0.003713 -6.441282
details: Russia_Samara_EBA_Yamnaya Russia_MA1_HG.SG 0.004270 8.290113
dscore: Russia_MA1_HG.SG f4: -0.000172 Z: -0.342482
details: Romania_C_oHG.SG Georgia_Satsurblia.SG -0.001093 -1.644810
details: Turkey_N Georgia_Satsurblia.SG -0.000516 -1.081904
details: Iran_GanjDareh_N Georgia_Satsurblia.SG 0.000829 1.430305
details: Russia_Samara_EBA_Yamnaya Georgia_Satsurblia.SG 0.002592 5.091084
dscore: Georgia_Satsurblia.SG f4: 0.000194 Z: 0.391098
details: Romania_C_oHG.SG Russia_DevilsCave_N.SG 0.000249 0.440264
details: Turkey_N Russia_DevilsCave_N.SG -0.001414 -3.486939
details: Iran_GanjDareh_N Russia_DevilsCave_N.SG -0.001589 -3.420136
details: Russia_Samara_EBA_Yamnaya Russia_DevilsCave_N.SG 0.001330 3.212109
dscore: Russia_DevilsCave_N.SG f4: -0.000262 Z: -0.627167
details: Romania_C_oHG.SG Papuan.DG 0.000309 0.592382
details: Turkey_N Papuan.DG -0.001447 -3.926295
details: Iran_GanjDareh_N Papuan.DG -0.001247 -3.110886
details: Russia_Samara_EBA_Yamnaya Papuan.DG 0.000735 1.951927
dscore: Papuan.DG f4: -0.000296 Z: -0.794281
details: Romania_C_oHG.SG Switzerland_Bichon.SG 0.009449 12.131678
details: Turkey_N Switzerland_Bichon.SG -0.004107 -8.122881
details: Iran_GanjDareh_N Switzerland_Bichon.SG -0.010353 -18.063777
details: Russia_Samara_EBA_Yamnaya Switzerland_Bichon.SG -0.001207 -2.267904
dscore: Switzerland_Bichon.SG f4: 0.000245 Z: 0.458149
details: Romania_C_oHG.SG Turkey_Epipaleolithic 0.002334 3.456958
details: Turkey_N Turkey_Epipaleolithic 0.005848 11.857288
details: Iran_GanjDareh_N Turkey_Epipaleolithic -0.007083 -12.747328
details: Russia_Samara_EBA_Yamnaya Turkey_Epipaleolithic -0.002110 -4.178519
dscore: Turkey_Epipaleolithic f4: 0.000145 Z: 0.295899
details: Romania_C_oHG.SG Israel_Natufian_published 0.000389 0.531036
details: Turkey_N Israel_Natufian_published 0.004261 8.630648
details: Iran_GanjDareh_N Israel_Natufian_published -0.004344 -7.553265
details: Russia_Samara_EBA_Yamnaya Israel_Natufian_published -0.001688 -3.256873
dscore: Israel_Natufian_published f4: -0.000243 Z: -0.473369
details: Romania_C_oHG.SG Russia_Steppe_Eneolithic 0.000009 0.016211
details: Turkey_N Russia_Steppe_Eneolithic -0.002026 -5.494331
details: Iran_GanjDareh_N Russia_Steppe_Eneolithic -0.002224 -4.909979
details: Russia_Samara_EBA_Yamnaya Russia_Steppe_Eneolithic 0.004589 11.877528
dscore: Russia_Steppe_Eneolithic f4: 0.000059 Z: 0.151501
details: Romania_C_oHG.SG ONG.SG 0.000395 0.794738
details: Turkey_N ONG.SG -0.001097 -3.115849
details: Iran_GanjDareh_N ONG.SG -0.001260 -3.072230
details: Russia_Samara_EBA_Yamnaya ONG.SG 0.001336 3.607552
dscore: ONG.SG f4: -0.000070 Z: -0.196304
gendstat: Mbuti.DG Russia_Ust_Ishim.DG -0.575
gendstat: Mbuti.DG China_Tianyuan 2.517
gendstat: Mbuti.DG Goyet_Neanderthal.SG -0.778
gendstat: Mbuti.DG Russia_Sunghir3.SG 0.322
gendstat: Mbuti.DG Russia_Kostenki14.SG 0.220
gendstat: Mbuti.DG Russia_MA1_HG.SG -0.342
gendstat: Mbuti.DG Georgia_Satsurblia.SG 0.391
gendstat: Mbuti.DG Russia_DevilsCave_N.SG -0.627
gendstat: Mbuti.DG Papuan.DG -0.794
gendstat: Mbuti.DG Switzerland_Bichon.SG 0.458
gendstat: Mbuti.DG Turkey_Epipaleolithic 0.296
gendstat: Mbuti.DG Israel_Natufian_published -0.473
gendstat: Mbuti.DG Russia_Steppe_Eneolithic 0.152
gendstat: Mbuti.DG ONG.SG -0.196
gendstat: Russia_Ust_Ishim.DG China_Tianyuan 2.779
gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG 0.052
gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG 0.738
gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 0.668
gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG 0.157
gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG 0.789
gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG -0.004
gendstat: Russia_Ust_Ishim.DG Papuan.DG -0.077
gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG 0.858
gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic 0.686
gendstat: Russia_Ust_Ishim.DG Israel_Natufian_published 0.027
gendstat: Russia_Ust_Ishim.DG Russia_Steppe_Eneolithic 0.660
gendstat: Russia_Ust_Ishim.DG ONG.SG 0.401
gendstat: China_Tianyuan Goyet_Neanderthal.SG -2.715
gendstat: China_Tianyuan Russia_Sunghir3.SG -1.887
gendstat: China_Tianyuan Russia_Kostenki14.SG -2.004
gendstat: China_Tianyuan Russia_MA1_HG.SG -2.477
gendstat: China_Tianyuan Georgia_Satsurblia.SG -1.775
gendstat: China_Tianyuan Russia_DevilsCave_N.SG -3.385
gendstat: China_Tianyuan Papuan.DG -3.370
gendstat: China_Tianyuan Switzerland_Bichon.SG -1.584
gendstat: China_Tianyuan Turkey_Epipaleolithic -1.823
gendstat: China_Tianyuan Israel_Natufian_published -2.348
gendstat: China_Tianyuan Russia_Steppe_Eneolithic -2.420
gendstat: China_Tianyuan ONG.SG -2.798
gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG 0.708
gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG 0.613
gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG 0.107
gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG 0.743
gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG -0.060
gendstat: Goyet_Neanderthal.SG Papuan.DG -0.142
gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG 0.805
gendstat: Goyet_Neanderthal.SG Turkey_Epipaleolithic 0.677
gendstat: Goyet_Neanderthal.SG Israel_Natufian_published -0.019
gendstat: Goyet_Neanderthal.SG Russia_Steppe_Eneolithic 0.625
gendstat: Goyet_Neanderthal.SG ONG.SG 0.357
gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG -0.095
gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG -0.554
gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG 0.063
gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG -0.789
gendstat: Russia_Sunghir3.SG Papuan.DG -0.881
gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG 0.150
gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic -0.020
gendstat: Russia_Sunghir3.SG Israel_Natufian_published -0.653
gendstat: Russia_Sunghir3.SG Russia_Steppe_Eneolithic -0.201
gendstat: Russia_Sunghir3.SG ONG.SG -0.446
gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.501
gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG 0.154
gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG -0.722
gendstat: Russia_Kostenki14.SG Papuan.DG -0.821
gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 0.235
gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic 0.066
gendstat: Russia_Kostenki14.SG Israel_Natufian_published -0.583
gendstat: Russia_Kostenki14.SG Russia_Steppe_Eneolithic -0.097
gendstat: Russia_Kostenki14.SG ONG.SG -0.377
gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 0.637
gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG -0.176
gendstat: Russia_MA1_HG.SG Papuan.DG -0.243
gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG 0.685
gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic 0.517
gendstat: Russia_MA1_HG.SG Israel_Natufian_published -0.111
gendstat: Russia_MA1_HG.SG Russia_Steppe_Eneolithic 0.502
gendstat: Russia_MA1_HG.SG ONG.SG 0.207
gendstat: Georgia_Satsurblia.SG Russia_DevilsCave_N.SG -0.860
gendstat: Georgia_Satsurblia.SG Papuan.DG -0.967
gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG 0.082
gendstat: Georgia_Satsurblia.SG Turkey_Epipaleolithic -0.083
gendstat: Georgia_Satsurblia.SG Israel_Natufian_published -0.723
gendstat: Georgia_Satsurblia.SG Russia_Steppe_Eneolithic -0.288
gendstat: Georgia_Satsurblia.SG ONG.SG -0.541
gendstat: Russia_DevilsCave_N.SG Papuan.DG -0.092
gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG 0.936
gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic 0.749
gendstat: Russia_DevilsCave_N.SG Israel_Natufian_published 0.033
gendstat: Russia_DevilsCave_N.SG Russia_Steppe_Eneolithic 0.762
gendstat: Russia_DevilsCave_N.SG ONG.SG 0.508
gendstat: Papuan.DG Switzerland_Bichon.SG 0.991
gendstat: Papuan.DG Turkey_Epipaleolithic 0.820
gendstat: Papuan.DG Israel_Natufian_published 0.095
gendstat: Papuan.DG Russia_Steppe_Eneolithic 0.872
gendstat: Papuan.DG ONG.SG 0.652
gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic -0.171
gendstat: Switzerland_Bichon.SG Israel_Natufian_published -0.756
gendstat: Switzerland_Bichon.SG Russia_Steppe_Eneolithic -0.371
gendstat: Switzerland_Bichon.SG ONG.SG -0.575
gendstat: Turkey_Epipaleolithic Israel_Natufian_published -0.627
gendstat: Turkey_Epipaleolithic Russia_Steppe_Eneolithic -0.164
gendstat: Turkey_Epipaleolithic ONG.SG -0.407
gendstat: Israel_Natufian_published Russia_Steppe_Eneolithic 0.552
gendstat: Israel_Natufian_published ONG.SG 0.322
gendstat: Russia_Steppe_Eneolithic ONG.SG -0.321
##end of qpAdm: 25.458 seconds cpu 1.597 Mbytes in use
This model comes up as 20.6% Russia_Samara_EBA_Yamnaya + 21.2% Iran_Ganj_Dareh_N (!!!) + 37.5% Romania_C_oHG + 20.7% Turkey_N.
If I use the .SG file for Turkey_N, the p-value climbs even more.
qpAdm: parameter file: parqpadm.txt
### THE INPUT PARAMETERS
##PARAMETER NAME: VALUE
fstatsname: fstatsa.txt
popleft: left.txt
popright: right.txt
details: YES
## qpAdm version: 1520
seed: 1877493023
*** recommended that inbreed be explicitly set ***
inbreed set NO
left pops:
Polish.DG
Russia_Samara_EBA_Yamnaya
Iran_GanjDareh_N
Romania_C_oHG.SG
Turkey_N.SG
right pops:
Mbuti.DG
Russia_Ust_Ishim.DG
China_Tianyuan
Goyet_Neanderthal.SG
Russia_Sunghir3.SG
Russia_Kostenki14.SG
Russia_MA1_HG.SG
Georgia_Satsurblia.SG
Russia_DevilsCave_N.SG
Papuan.DG
Switzerland_Bichon.SG
Turkey_Epipaleolithic
Israel_Natufian_published
Russia_Steppe_Eneolithic
ONG.SG
codimension 1
f4info:
f4rank: 3 dof: 11 chisq: 13.994 tail: 0.233310199 dofdiff: 13 chisqdiff: -13.994 taildiff: 1
B:
scale 1.000 1.000 1.000
Russia_Ust_Ishim.DG 0.454 0.210 -0.011
China_Tianyuan 0.179 0.653 0.419
Goyet_Neanderthal.SG 0.133 -0.020 0.067
Russia_Sunghir3.SG 1.156 0.033 0.134
Russia_Kostenki14.SG 0.979 0.182 -0.141
Russia_MA1_HG.SG 0.902 1.640 1.204
Georgia_Satsurblia.SG -0.183 0.785 0.948
Russia_DevilsCave_N.SG 0.330 0.552 0.390
Papuan.DG 0.274 0.500 -0.026
Switzerland_Bichon.SG 2.777 0.209 -2.238
Turkey_Epipaleolithic 1.344 -2.250 1.579
Israel_Natufian_published 0.719 -1.285 1.075
Russia_Steppe_Eneolithic 0.541 1.647 1.580
ONG.SG 0.305 0.405 0.361
A:
scale 403.683 664.711 1251.145
Russia_Samara_EBA_Yamnaya 0.047 1.217 1.216
Iran_GanjDareh_N -1.678 0.284 -0.541
Romania_C_oHG.SG 1.046 0.018 -1.145
Turkey_N.SG -0.297 -1.561 0.958
full rank
f4info:
f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 13.994 taildiff: 0.233310199
B:
scale 466.697 240.375 347.014 388.279
Russia_Ust_Ishim.DG 0.143 -0.484 0.317 -0.405
China_Tianyuan 1.220 0.053 0.474 -0.155
Goyet_Neanderthal.SG -0.036 -0.176 0.050 -0.056
Russia_Sunghir3.SG 0.244 -1.141 1.077 -0.265
Russia_Kostenki14.SG 0.155 -0.936 0.908 -0.486
Russia_MA1_HG.SG 1.955 -0.891 0.426 -1.439
Georgia_Satsurblia.SG 1.185 0.197 -0.392 -0.310
Russia_DevilsCave_N.SG 0.584 -0.384 0.079 -0.558
Papuan.DG 0.312 -0.299 0.100 -0.642
Switzerland_Bichon.SG -0.603 -2.481 3.265 -1.625
Turkey_Epipaleolithic -0.987 -1.696 0.797 2.240
Israel_Natufian_published -0.639 -1.040 0.157 1.199
Russia_Steppe_Eneolithic 2.172 -0.528 -0.005 -1.175
ONG.SG 0.526 -0.304 0.135 -0.366
A:
scale 2.000 2.000 2.000 2.000
Russia_Samara_EBA_Yamnaya 2.000 0.000 0.000 0.000
Iran_GanjDareh_N 0.000 2.000 0.000 0.000
Romania_C_oHG.SG 0.000 0.000 2.000 0.000
Turkey_N.SG 0.000 0.000 0.000 2.000
best coefficients: 0.238 0.186 0.352 0.224
totmean: 0.238 0.186 0.352 0.224
boot mean: 0.237 0.187 0.353 0.223
std. errors: 0.059 0.053 0.042 0.043
error covariance (* 1,000,000)
3459 -2576 -1645 762
-2576 2861 1111 -1396
-1645 1111 1743 -1208
762 -1396 -1208 1842
summ: Polish.DG 4 0.233310 0.237 0.187 0.353 0.223 3459 -2576 -1645 762 2861 ...
1111 -1396 1743 -1208 1842
fixed pat wt dof chisq tail prob
0000 0 11 13.994 0.23331 0.238 0.186 0.352 0.224
0001 1 12 39.700 8.06476e-05 0.130 0.359 0.511 0.000
0010 1 12 99.142 8.19709e-16 0.587 -0.057 0.000 0.470 infeasible
0100 1 12 27.928 0.00566747 0.405 0.000 0.283 0.312
1000 1 12 30.093 0.00270408 0.000 0.363 0.464 0.173
0011 2 13 298.628 0 0.812 0.188 0.000 0.000
0101 2 13 97.146 5.91404e-15 0.487 0.000 0.513 0.000
0110 2 13 100.989 1.06664e-15 0.553 0.000 0.000 0.447
1001 2 13 44.039 3.0237e-05 0.000 0.441 0.559 0.000
1010 2 13 270.313 0 0.000 0.371 0.000 0.629
1100 2 13 142.733 5.95925e-24 0.000 0.000 0.549 0.451
0111 3 14 311.872 0 1.000 0.000 0.000 0.000
1011 3 14 513.261 0 0.000 1.000 0.000 0.000
1101 3 14 208.578 0 0.000 0.000 1.000 0.000
1110 3 14 364.357 0 0.000 0.000 0.000 1.000
best pat: 0000 0.23331 - -
best pat: 0100 0.00566747 chi(nested): 13.934 p-value for nested model: 0.000189354
best pat: 1001 3.0237e-05 not nested
best pat: 1101 9.67016e-37 chi(nested): 164.539 p-value for nested model: 1.15336e-37
coeffs: 0.238 0.186 0.352 0.224
## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)
details: Russia_Samara_EBA_Yamnaya Russia_Ust_Ishim.DG 0.000306 0.666044
details: Iran_GanjDareh_N Russia_Ust_Ishim.DG -0.002015 -3.940367
details: Romania_C_oHG.SG Russia_Ust_Ishim.DG 0.000913 1.540800
details: Turkey_N.SG Russia_Ust_Ishim.DG -0.001044 -2.080264
dscore: Russia_Ust_Ishim.DG f4: -0.000215 Z: -0.477482
details: Russia_Samara_EBA_Yamnaya China_Tianyuan 0.002614 5.554787
details: Iran_GanjDareh_N China_Tianyuan 0.000221 0.422187
details: Romania_C_oHG.SG China_Tianyuan 0.001366 2.079688
details: Turkey_N.SG China_Tianyuan -0.000399 -0.812747
dscore: China_Tianyuan f4: 0.001055 Z: 2.262677
details: Russia_Samara_EBA_Yamnaya Goyet_Neanderthal.SG -0.000077 -0.248543
details: Iran_GanjDareh_N Goyet_Neanderthal.SG -0.000731 -1.951361
details: Romania_C_oHG.SG Goyet_Neanderthal.SG 0.000143 0.348163
details: Turkey_N.SG Goyet_Neanderthal.SG -0.000144 -0.437906
dscore: Goyet_Neanderthal.SG f4: -0.000136 Z: -0.462320
details: Russia_Samara_EBA_Yamnaya Russia_Sunghir3.SG 0.000523 1.060170
details: Iran_GanjDareh_N Russia_Sunghir3.SG -0.004746 -8.639014
details: Romania_C_oHG.SG Russia_Sunghir3.SG 0.003103 4.563385
details: Turkey_N.SG Russia_Sunghir3.SG -0.000683 -1.360970
dscore: Russia_Sunghir3.SG f4: 0.000179 Z: 0.375838
details: Russia_Samara_EBA_Yamnaya Russia_Kostenki14.SG 0.000331 0.678802
details: Iran_GanjDareh_N Russia_Kostenki14.SG -0.003894 -7.144501
details: Romania_C_oHG.SG Russia_Kostenki14.SG 0.002616 3.949573
details: Turkey_N.SG Russia_Kostenki14.SG -0.001252 -2.396964
dscore: Russia_Kostenki14.SG f4: -0.000006 Z: -0.012608
details: Russia_Samara_EBA_Yamnaya Russia_MA1_HG.SG 0.004189 8.079111
details: Iran_GanjDareh_N Russia_MA1_HG.SG -0.003707 -6.462379
details: Romania_C_oHG.SG Russia_MA1_HG.SG 0.001229 1.798153
details: Turkey_N.SG Russia_MA1_HG.SG -0.003707 -6.566561
dscore: Russia_MA1_HG.SG f4: -0.000090 Z: -0.178949
details: Russia_Samara_EBA_Yamnaya Georgia_Satsurblia.SG 0.002539 4.946926
details: Iran_GanjDareh_N Georgia_Satsurblia.SG 0.000818 1.413516
details: Romania_C_oHG.SG Georgia_Satsurblia.SG -0.001131 -1.714630
details: Turkey_N.SG Georgia_Satsurblia.SG -0.000799 -1.504574
dscore: Georgia_Satsurblia.SG f4: 0.000181 Z: 0.365345
details: Russia_Samara_EBA_Yamnaya Russia_DevilsCave_N.SG 0.001252 3.006229
details: Iran_GanjDareh_N Russia_DevilsCave_N.SG -0.001596 -3.446708
details: Romania_C_oHG.SG Russia_DevilsCave_N.SG 0.000229 0.405708
details: Turkey_N.SG Russia_DevilsCave_N.SG -0.001438 -3.262127
dscore: Russia_DevilsCave_N.SG f4: -0.000240 Z: -0.582762
details: Russia_Samara_EBA_Yamnaya Papuan.DG 0.000668 1.776786
details: Iran_GanjDareh_N Papuan.DG -0.001245 -3.117499
details: Romania_C_oHG.SG Papuan.DG 0.000287 0.552499
details: Turkey_N.SG Papuan.DG -0.001654 -4.173771
dscore: Papuan.DG f4: -0.000342 Z: -0.928146
details: Russia_Samara_EBA_Yamnaya Switzerland_Bichon.SG -0.001292 -2.408984
details: Iran_GanjDareh_N Switzerland_Bichon.SG -0.010321 -18.040640
details: Romania_C_oHG.SG Switzerland_Bichon.SG 0.009408 12.091976
details: Turkey_N.SG Switzerland_Bichon.SG -0.004186 -7.678698
dscore: Switzerland_Bichon.SG f4: 0.000143 Z: 0.270376
details: Russia_Samara_EBA_Yamnaya Turkey_Epipaleolithic -0.002115 -4.142554
details: Iran_GanjDareh_N Turkey_Epipaleolithic -0.007055 -12.706973
details: Romania_C_oHG.SG Turkey_Epipaleolithic 0.002296 3.414021
details: Turkey_N.SG Turkey_Epipaleolithic 0.005768 10.726726
dscore: Turkey_Epipaleolithic f4: 0.000279 Z: 0.572707
details: Russia_Samara_EBA_Yamnaya Israel_Natufian_published -0.001369 -2.569811
details: Iran_GanjDareh_N Israel_Natufian_published -0.004328 -7.570018
details: Romania_C_oHG.SG Israel_Natufian_published 0.000452 0.617022
details: Turkey_N.SG Israel_Natufian_published 0.003088 5.437693
dscore: Israel_Natufian_published f4: -0.000284 Z: -0.555469
details: Russia_Samara_EBA_Yamnaya Russia_Steppe_Eneolithic 0.004654 11.833528
details: Iran_GanjDareh_N Russia_Steppe_Eneolithic -0.002195 -4.855412
details: Romania_C_oHG.SG Russia_Steppe_Eneolithic -0.000015 -0.028342
details: Turkey_N.SG Russia_Steppe_Eneolithic -0.003027 -7.522610
dscore: Russia_Steppe_Eneolithic f4: 0.000017 Z: 0.044909
details: Russia_Samara_EBA_Yamnaya ONG.SG 0.001126 3.004147
details: Iran_GanjDareh_N ONG.SG -0.001266 -3.098090
details: Romania_C_oHG.SG ONG.SG 0.000390 0.785436
details: Turkey_N.SG ONG.SG -0.000942 -2.350104
dscore: ONG.SG f4: -0.000041 Z: -0.114405
gendstat: Mbuti.DG Russia_Ust_Ishim.DG -0.477
gendstat: Mbuti.DG China_Tianyuan 2.263
gendstat: Mbuti.DG Goyet_Neanderthal.SG -0.462
gendstat: Mbuti.DG Russia_Sunghir3.SG 0.376
gendstat: Mbuti.DG Russia_Kostenki14.SG -0.013
gendstat: Mbuti.DG Russia_MA1_HG.SG -0.179
gendstat: Mbuti.DG Georgia_Satsurblia.SG 0.365
gendstat: Mbuti.DG Russia_DevilsCave_N.SG -0.583
gendstat: Mbuti.DG Papuan.DG -0.928
gendstat: Mbuti.DG Switzerland_Bichon.SG 0.270
gendstat: Mbuti.DG Turkey_Epipaleolithic 0.573
gendstat: Mbuti.DG Israel_Natufian_published -0.555
gendstat: Mbuti.DG Russia_Steppe_Eneolithic 0.045
gendstat: Mbuti.DG ONG.SG -0.114
gendstat: Russia_Ust_Ishim.DG China_Tianyuan 2.458
gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG 0.151
gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG 0.707
gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 0.377
gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG 0.224
gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG 0.689
gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG -0.054
gendstat: Russia_Ust_Ishim.DG Papuan.DG -0.271
gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG 0.613
gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic 0.839
gendstat: Russia_Ust_Ishim.DG Israel_Natufian_published -0.114
gendstat: Russia_Ust_Ishim.DG Russia_Steppe_Eneolithic 0.485
gendstat: Russia_Ust_Ishim.DG ONG.SG 0.371
gendstat: China_Tianyuan Goyet_Neanderthal.SG -2.307
gendstat: China_Tianyuan Russia_Sunghir3.SG -1.615
gendstat: China_Tianyuan Russia_Kostenki14.SG -1.958
gendstat: China_Tianyuan Russia_MA1_HG.SG -2.088
gendstat: China_Tianyuan Georgia_Satsurblia.SG -1.575
gendstat: China_Tianyuan Russia_DevilsCave_N.SG -3.059
gendstat: China_Tianyuan Papuan.DG -3.191
gendstat: China_Tianyuan Switzerland_Bichon.SG -1.553
gendstat: China_Tianyuan Turkey_Epipaleolithic -1.374
gendstat: China_Tianyuan Israel_Natufian_published -2.198
gendstat: China_Tianyuan Russia_Steppe_Eneolithic -2.239
gendstat: China_Tianyuan ONG.SG -2.467
gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG 0.587
gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG 0.237
gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG 0.083
gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG 0.557
gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG -0.213
gendstat: Goyet_Neanderthal.SG Papuan.DG -0.461
gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG 0.478
gendstat: Goyet_Neanderthal.SG Turkey_Epipaleolithic 0.758
gendstat: Goyet_Neanderthal.SG Israel_Natufian_published -0.259
gendstat: Goyet_Neanderthal.SG Russia_Steppe_Eneolithic 0.335
gendstat: Goyet_Neanderthal.SG ONG.SG 0.211
gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG -0.349
gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG -0.453
gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG 0.003
gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG -0.799
gendstat: Russia_Sunghir3.SG Papuan.DG -1.029
gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG -0.061
gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic 0.175
gendstat: Russia_Sunghir3.SG Israel_Natufian_published -0.761
gendstat: Russia_Sunghir3.SG Russia_Steppe_Eneolithic -0.336
gendstat: Russia_Sunghir3.SG ONG.SG -0.437
gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.151
gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG 0.322
gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG -0.461
gendstat: Russia_Kostenki14.SG Papuan.DG -0.683
gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 0.251
gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic 0.486
gendstat: Russia_Kostenki14.SG Israel_Natufian_published -0.462
gendstat: Russia_Kostenki14.SG Russia_Steppe_Eneolithic 0.048
gendstat: Russia_Kostenki14.SG ONG.SG -0.075
gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 0.469
gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG -0.295
gendstat: Russia_MA1_HG.SG Papuan.DG -0.495
gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG 0.382
gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic 0.598
gendstat: Russia_MA1_HG.SG Israel_Natufian_published -0.306
gendstat: Russia_MA1_HG.SG Russia_Steppe_Eneolithic 0.233
gendstat: Russia_MA1_HG.SG ONG.SG 0.099
gendstat: Georgia_Satsurblia.SG Russia_DevilsCave_N.SG -0.800
gendstat: Georgia_Satsurblia.SG Papuan.DG -1.037
gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG -0.061
gendstat: Georgia_Satsurblia.SG Turkey_Epipaleolithic 0.165
gendstat: Georgia_Satsurblia.SG Israel_Natufian_published -0.767
gendstat: Georgia_Satsurblia.SG Russia_Steppe_Eneolithic -0.348
gendstat: Georgia_Satsurblia.SG ONG.SG -0.457
gendstat: Russia_DevilsCave_N.SG Papuan.DG -0.272
gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG 0.713
gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic 0.964
gendstat: Russia_DevilsCave_N.SG Israel_Natufian_published -0.077
gendstat: Russia_DevilsCave_N.SG Russia_Steppe_Eneolithic 0.616
gendstat: Russia_DevilsCave_N.SG ONG.SG 0.531
gendstat: Papuan.DG Switzerland_Bichon.SG 0.899
gendstat: Papuan.DG Turkey_Epipaleolithic 1.159
gendstat: Papuan.DG Israel_Natufian_published 0.105
gendstat: Papuan.DG Russia_Steppe_Eneolithic 0.883
gendstat: Papuan.DG ONG.SG 0.878
gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic 0.235
gendstat: Switzerland_Bichon.SG Israel_Natufian_published -0.666
gendstat: Switzerland_Bichon.SG Russia_Steppe_Eneolithic -0.252
gendstat: Switzerland_Bichon.SG ONG.SG -0.340
gendstat: Turkey_Epipaleolithic Israel_Natufian_published -0.912
gendstat: Turkey_Epipaleolithic Russia_Steppe_Eneolithic -0.500
gendstat: Turkey_Epipaleolithic ONG.SG -0.605
gendstat: Israel_Natufian_published Russia_Steppe_Eneolithic 0.552
gendstat: Israel_Natufian_published ONG.SG 0.454
gendstat: Russia_Steppe_Eneolithic ONG.SG -0.145
##end of qpAdm: 24.955 seconds cpu 1.597 Mbytes in use
However this model on g25 shows nil for Ganj-Dareh_N and the %s are all different.
https://i.ibb.co/gt7YS1P/Screenshot-2022-02-28-at-11-01-44-Vahaduo-Admixture-JS-21-01.png
b) Norwegian:
The model can be succesfull with both WHG and EHG, and also with CHG (around 5%) instead of Iran_N (around 13%ish), however the p-value is quite higher with the latter:
Model1:
qpAdm: parameter file: parqpadm.txt
### THE INPUT PARAMETERS
##PARAMETER NAME: VALUE
fstatsname: fstatsa.txt
popleft: left.txt
popright: right.txt
details: YES
## qpAdm version: 1520
seed: 1639082898
*** recommended that inbreed be explicitly set ***
inbreed set NO
left pops:
Norwegian.DG
Romania_C_oHG.SG
Turkey_N
Iran_GanjDareh_N
Russia_Samara_EBA_Yamnaya
right pops:
Mbuti.DG
Russia_Ust_Ishim.DG
China_Tianyuan
Goyet_Neanderthal.SG
Russia_Sunghir3.SG
Russia_Kostenki14.SG
Russia_MA1_HG.SG
Georgia_Satsurblia.SG
Russia_DevilsCave_N.SG
Papuan.DG
Switzerland_Bichon.SG
Turkey_Epipaleolithic
Israel_Natufian_published
Russia_Steppe_Eneolithic
ONG.SG
codimension 1
f4info:
f4rank: 3 dof: 11 chisq: 7.637 tail: 0.745446152 dofdiff: 13 chisqdiff: -7.637 taildiff: 1
B:
scale 1.000 1.000 1.000
Russia_Ust_Ishim.DG 0.448 0.182 -0.080
China_Tianyuan 0.251 0.422 0.509
Goyet_Neanderthal.SG 0.135 -0.001 -0.097
Russia_Sunghir3.SG 1.151 -0.010 0.054
Russia_Kostenki14.SG 0.984 0.089 -0.143
Russia_MA1_HG.SG 1.085 1.567 1.043
Georgia_Satsurblia.SG -0.078 0.713 0.976
Russia_DevilsCave_N.SG 0.399 0.541 0.393
Papuan.DG 0.296 0.447 0.091
Switzerland_Bichon.SG 2.753 0.227 -2.414
Turkey_Epipaleolithic 1.206 -2.336 1.251
Israel_Natufian_published 0.591 -1.676 1.092
Russia_Steppe_Eneolithic 0.691 1.334 1.678
ONG.SG 0.365 0.481 0.309
A:
scale 391.992 630.981 1173.639
Romania_C_oHG.SG 0.843 -0.403 -1.374
Turkey_N -0.388 -1.776 0.752
Iran_GanjDareh_N -1.772 0.190 -0.574
Russia_Samara_EBA_Yamnaya -0.004 0.804 1.103
full rank
f4info:
f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 7.637 taildiff: 0.745446152
B:
scale 369.240 323.733 223.584 619.378
Russia_Ust_Ishim.DG 0.484 -0.219 -0.366 0.321
China_Tianyuan 0.107 -0.232 -0.201 0.918
Goyet_Neanderthal.SG 0.045 -0.116 -0.169 -0.157
Russia_Sunghir3.SG 1.105 -0.215 -1.094 0.273
Russia_Kostenki14.SG 0.783 -0.429 -0.993 -0.029
Russia_MA1_HG.SG -0.090 -1.634 -1.165 1.718
Georgia_Satsurblia.SG -0.669 -0.400 0.025 1.160
Russia_DevilsCave_N.SG 0.018 -0.522 -0.400 0.700
Papuan.DG 0.176 -0.414 -0.241 0.559
Switzerland_Bichon.SG 3.181 -1.600 -2.502 -1.265
Turkey_Epipaleolithic 1.005 2.019 -1.497 -1.066
Israel_Natufian_published 0.305 1.521 -0.873 -0.775
Russia_Steppe_Eneolithic -0.450 -1.053 -0.772 2.082
ONG.SG -0.095 -0.566 -0.427 0.424
A:
scale 2.000 2.000 2.000 2.000
Romania_C_oHG.SG 2.000 0.000 0.000 0.000
Turkey_N 0.000 2.000 0.000 0.000
Iran_GanjDareh_N 0.000 0.000 2.000 0.000
Russia_Samara_EBA_Yamnaya 0.000 0.000 0.000 2.000
best coefficients: 0.338 0.122 0.133 0.407
totmean: 0.338 0.122 0.133 0.407
boot mean: 0.338 0.121 0.133 0.407
std. errors: 0.042 0.038 0.045 0.053
error covariance (* 1,000,000)
1755 -1070 712 -1397
-1070 1441 -852 481
712 -852 2010 -1870
-1397 481 -1870 2786
summ: Norwegian.DG 4 0.745446 0.338 0.121 0.133 0.407 1755 -1070 712 -1397 1441 ...
-852 481 2010 -1870 2786
fixed pat wt dof chisq tail prob
0000 0 11 7.637 0.745446 0.338 0.122 0.133 0.407
0001 1 12 56.313 1.05119e-07 0.547 0.038 0.415 0.000
0010 1 12 15.551 0.212659 0.295 0.175 0.000 0.529
0100 1 12 17.156 0.143812 0.427 0.000 0.200 0.373
1000 1 12 85.029 4.49379e-13 0.000 0.322 -0.040 0.718 infeasible
0011 2 13 191.798 0 0.800 0.200 0.000 0.000
0101 2 13 57.749 1.32264e-07 0.574 0.000 0.426 0.000
0110 2 13 39.026 0.000198039 0.419 0.000 0.000 0.581
1001 2 13 354.530 0 0.000 0.461 0.539 0.000
1010 2 13 87.094 5.0113e-13 0.000 0.312 0.000 0.688
1100 2 13 203.883 0 0.000 0.000 0.089 0.911
0111 3 14 204.279 0 1.000 0.000 0.000 0.000
1011 3 14 664.220 0 0.000 1.000 0.000 0.000
1101 3 14 537.544 0 0.000 0.000 1.000 0.000
1110 3 14 207.256 0 0.000 0.000 0.000 1.000
best pat: 0000 0.745446 - -
best pat: 0010 0.212659 chi(nested): 7.915 p-value for nested model: 0.00490308
best pat: 0110 0.000198039 chi(nested): 23.475 p-value for nested model: 1.26569e-06
best pat: 0111 7.33054e-36 chi(nested): 165.253 p-value for nested model: 8.05299e-38
coeffs: 0.338 0.122 0.133 0.407
## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)
details: Romania_C_oHG.SG Russia_Ust_Ishim.DG 0.001311 2.164739
details: Turkey_N Russia_Ust_Ishim.DG -0.000678 -1.502570
details: Iran_GanjDareh_N Russia_Ust_Ishim.DG -0.001637 -3.170618
details: Russia_Samara_EBA_Yamnaya Russia_Ust_Ishim.DG 0.000518 1.168462
dscore: Russia_Ust_Ishim.DG f4: 0.000353 Z: 0.792211
details: Romania_C_oHG.SG China_Tianyuan 0.000289 0.453771
details: Turkey_N China_Tianyuan -0.000715 -1.579597
details: Iran_GanjDareh_N China_Tianyuan -0.000901 -1.744290
details: Russia_Samara_EBA_Yamnaya China_Tianyuan 0.001482 3.230454
dscore: China_Tianyuan f4: 0.000494 Z: 1.090206
details: Romania_C_oHG.SG Goyet_Neanderthal.SG 0.000121 0.281713
details: Turkey_N Goyet_Neanderthal.SG -0.000357 -1.146409
details: Iran_GanjDareh_N Goyet_Neanderthal.SG -0.000756 -2.051205
details: Russia_Samara_EBA_Yamnaya Goyet_Neanderthal.SG -0.000253 -0.806146
dscore: Goyet_Neanderthal.SG f4: -0.000207 Z: -0.674260
details: Romania_C_oHG.SG Russia_Sunghir3.SG 0.002992 4.151261
details: Turkey_N Russia_Sunghir3.SG -0.000664 -1.321022
details: Iran_GanjDareh_N Russia_Sunghir3.SG -0.004892 -8.613198
details: Russia_Samara_EBA_Yamnaya Russia_Sunghir3.SG 0.000441 0.890637
dscore: Russia_Sunghir3.SG f4: 0.000458 Z: 0.901897
details: Romania_C_oHG.SG Russia_Kostenki14.SG 0.002120 3.371879
details: Turkey_N Russia_Kostenki14.SG -0.001326 -2.914008
details: Iran_GanjDareh_N Russia_Kostenki14.SG -0.004442 -8.246377
details: Russia_Samara_EBA_Yamnaya Russia_Kostenki14.SG -0.000046 -0.103358
dscore: Russia_Kostenki14.SG f4: -0.000055 Z: -0.124757
details: Romania_C_oHG.SG Russia_MA1_HG.SG -0.000244 -0.353286
details: Turkey_N Russia_MA1_HG.SG -0.005048 -10.246927
details: Iran_GanjDareh_N Russia_MA1_HG.SG -0.005209 -8.825434
details: Russia_Samara_EBA_Yamnaya Russia_MA1_HG.SG 0.002775 5.491511
dscore: Russia_MA1_HG.SG f4: -0.000261 Z: -0.524729
details: Romania_C_oHG.SG Georgia_Satsurblia.SG -0.001811 -2.735914
details: Turkey_N Georgia_Satsurblia.SG -0.001235 -2.571796
details: Iran_GanjDareh_N Georgia_Satsurblia.SG 0.000110 0.193900
details: Russia_Samara_EBA_Yamnaya Georgia_Satsurblia.SG 0.001873 3.744833
dscore: Georgia_Satsurblia.SG f4: 0.000015 Z: 0.030074
details: Romania_C_oHG.SG Russia_DevilsCave_N.SG 0.000049 0.086448
details: Turkey_N Russia_DevilsCave_N.SG -0.001614 -4.016317
details: Iran_GanjDareh_N Russia_DevilsCave_N.SG -0.001788 -3.877527
details: Russia_Samara_EBA_Yamnaya Russia_DevilsCave_N.SG 0.001131 2.752611
dscore: Russia_DevilsCave_N.SG f4: 0.000042 Z: 0.102528
details: Romania_C_oHG.SG Papuan.DG 0.000476 0.962982
details: Turkey_N Papuan.DG -0.001279 -3.710294
details: Iran_GanjDareh_N Papuan.DG -0.001080 -2.609812
details: Russia_Samara_EBA_Yamnaya Papuan.DG 0.000902 2.494626
dscore: Papuan.DG f4: 0.000228 Z: 0.650389
details: Romania_C_oHG.SG Switzerland_Bichon.SG 0.008614 10.853485
details: Turkey_N Switzerland_Bichon.SG -0.004942 -9.294499
details: Iran_GanjDareh_N Switzerland_Bichon.SG -0.011188 -18.796544
details: Russia_Samara_EBA_Yamnaya Switzerland_Bichon.SG -0.002042 -3.648974
dscore: Switzerland_Bichon.SG f4: -0.000013 Z: -0.023490
details: Romania_C_oHG.SG Turkey_Epipaleolithic 0.002722 4.090180
details: Turkey_N Turkey_Epipaleolithic 0.006237 13.190740
details: Iran_GanjDareh_N Turkey_Epipaleolithic -0.006694 -12.606872
details: Russia_Samara_EBA_Yamnaya Turkey_Epipaleolithic -0.001721 -3.580302
dscore: Turkey_Epipaleolithic f4: 0.000089 Z: 0.190811
details: Romania_C_oHG.SG Israel_Natufian_published 0.000827 1.156395
details: Turkey_N Israel_Natufian_published 0.004699 9.382068
details: Iran_GanjDareh_N Israel_Natufian_published -0.003907 -6.688765
details: Russia_Samara_EBA_Yamnaya Israel_Natufian_published -0.001251 -2.464489
dscore: Israel_Natufian_published f4: -0.000177 Z: -0.353996
details: Romania_C_oHG.SG Russia_Steppe_Eneolithic -0.001219 -2.461080
details: Turkey_N Russia_Steppe_Eneolithic -0.003254 -8.639605
details: Iran_GanjDareh_N Russia_Steppe_Eneolithic -0.003452 -8.220420
details: Russia_Samara_EBA_Yamnaya Russia_Steppe_Eneolithic 0.003361 8.831271
dscore: Russia_Steppe_Eneolithic f4: 0.000100 Z: 0.277342
details: Romania_C_oHG.SG ONG.SG -0.000256 -0.493982
details: Turkey_N ONG.SG -0.001748 -5.030381
details: Iran_GanjDareh_N ONG.SG -0.001911 -4.596268
details: Russia_Samara_EBA_Yamnaya ONG.SG 0.000685 1.856787
dscore: ONG.SG f4: -0.000275 Z: -0.751147
gendstat: Mbuti.DG Russia_Ust_Ishim.DG 0.792
gendstat: Mbuti.DG China_Tianyuan 1.090
gendstat: Mbuti.DG Goyet_Neanderthal.SG -0.674
gendstat: Mbuti.DG Russia_Sunghir3.SG 0.902
gendstat: Mbuti.DG Russia_Kostenki14.SG -0.125
gendstat: Mbuti.DG Russia_MA1_HG.SG -0.525
gendstat: Mbuti.DG Georgia_Satsurblia.SG 0.030
gendstat: Mbuti.DG Russia_DevilsCave_N.SG 0.103
gendstat: Mbuti.DG Papuan.DG 0.650
gendstat: Mbuti.DG Switzerland_Bichon.SG -0.023
gendstat: Mbuti.DG Turkey_Epipaleolithic 0.191
gendstat: Mbuti.DG Israel_Natufian_published -0.354
gendstat: Mbuti.DG Russia_Steppe_Eneolithic 0.277
gendstat: Mbuti.DG ONG.SG -0.751
gendstat: Russia_Ust_Ishim.DG China_Tianyuan 0.273
gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG -1.056
gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG 0.189
gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG -0.757
gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG -1.112
gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG -0.597
gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG -0.647
gendstat: Russia_Ust_Ishim.DG Papuan.DG -0.282
gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG -0.628
gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic -0.486
gendstat: Russia_Ust_Ishim.DG Israel_Natufian_published -0.913
gendstat: Russia_Ust_Ishim.DG Russia_Steppe_Eneolithic -0.549
gendstat: Russia_Ust_Ishim.DG ONG.SG -1.420
gendstat: China_Tianyuan Goyet_Neanderthal.SG -1.343
gendstat: China_Tianyuan Russia_Sunghir3.SG -0.063
gendstat: China_Tianyuan Russia_Kostenki14.SG -1.042
gendstat: China_Tianyuan Russia_MA1_HG.SG -1.326
gendstat: China_Tianyuan Georgia_Satsurblia.SG -0.850
gendstat: China_Tianyuan Russia_DevilsCave_N.SG -1.041
gendstat: China_Tianyuan Papuan.DG -0.634
gendstat: China_Tianyuan Switzerland_Bichon.SG -0.803
gendstat: China_Tianyuan Turkey_Epipaleolithic -0.730
gendstat: China_Tianyuan Israel_Natufian_published -1.116
gendstat: China_Tianyuan Russia_Steppe_Eneolithic -0.825
gendstat: China_Tianyuan ONG.SG -1.761
gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG 1.149
gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG 0.281
gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG -0.095
gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG 0.395
gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG 0.479
gendstat: Goyet_Neanderthal.SG Papuan.DG 0.944
gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG 0.312
gendstat: Goyet_Neanderthal.SG Turkey_Epipaleolithic 0.550
gendstat: Goyet_Neanderthal.SG Israel_Natufian_published 0.052
gendstat: Goyet_Neanderthal.SG Russia_Steppe_Eneolithic 0.649
gendstat: Goyet_Neanderthal.SG ONG.SG -0.148
gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG -0.992
gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG -1.263
gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG -0.785
gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG -0.770
gendstat: Russia_Sunghir3.SG Papuan.DG -0.469
gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG -0.795
gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic -0.658
gendstat: Russia_Sunghir3.SG Israel_Natufian_published -1.013
gendstat: Russia_Sunghir3.SG Russia_Steppe_Eneolithic -0.713
gendstat: Russia_Sunghir3.SG ONG.SG -1.529
gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.394
gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG 0.125
gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG 0.195
gendstat: Russia_Kostenki14.SG Papuan.DG 0.632
gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 0.073
gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic 0.256
gendstat: Russia_Kostenki14.SG Israel_Natufian_published -0.204
gendstat: Russia_Kostenki14.SG Russia_Steppe_Eneolithic 0.337
gendstat: Russia_Kostenki14.SG ONG.SG -0.477
gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 0.487
gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG 0.570
gendstat: Russia_MA1_HG.SG Papuan.DG 0.982
gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG 0.414
gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic 0.595
gendstat: Russia_MA1_HG.SG Israel_Natufian_published 0.135
gendstat: Russia_MA1_HG.SG Russia_Steppe_Eneolithic 0.802
gendstat: Russia_MA1_HG.SG ONG.SG -0.028
gendstat: Georgia_Satsurblia.SG Russia_DevilsCave_N.SG 0.052
gendstat: Georgia_Satsurblia.SG Papuan.DG 0.427
gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG -0.044
gendstat: Georgia_Satsurblia.SG Turkey_Epipaleolithic 0.130
gendstat: Georgia_Satsurblia.SG Israel_Natufian_published -0.320
gendstat: Georgia_Satsurblia.SG Russia_Steppe_Eneolithic 0.183
gendstat: Georgia_Satsurblia.SG ONG.SG -0.600
gendstat: Russia_DevilsCave_N.SG Papuan.DG 0.495
gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -0.096
gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic 0.088
gendstat: Russia_DevilsCave_N.SG Israel_Natufian_published -0.392
gendstat: Russia_DevilsCave_N.SG Russia_Steppe_Eneolithic 0.136
gendstat: Russia_DevilsCave_N.SG ONG.SG -0.855
gendstat: Papuan.DG Switzerland_Bichon.SG -0.436
gendstat: Papuan.DG Turkey_Epipaleolithic -0.284
gendstat: Papuan.DG Israel_Natufian_published -0.785
gendstat: Papuan.DG Russia_Steppe_Eneolithic -0.334
gendstat: Papuan.DG ONG.SG -1.538
gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic 0.168
gendstat: Switzerland_Bichon.SG Israel_Natufian_published -0.251
gendstat: Switzerland_Bichon.SG Russia_Steppe_Eneolithic 0.212
gendstat: Switzerland_Bichon.SG ONG.SG -0.485
gendstat: Turkey_Epipaleolithic Israel_Natufian_published -0.455
gendstat: Turkey_Epipaleolithic Russia_Steppe_Eneolithic 0.024
gendstat: Turkey_Epipaleolithic ONG.SG -0.758
gendstat: Israel_Natufian_published Russia_Steppe_Eneolithic 0.530
gendstat: Israel_Natufian_published ONG.SG -0.187
gendstat: Russia_Steppe_Eneolithic ONG.SG -0.990
##end of qpAdm: 25.172 seconds cpu 1.597 Mbytes in use
Model2:
qpAdm: parameter file: parqpadm.txt
### THE INPUT PARAMETERS
##PARAMETER NAME: VALUE
fstatsname: fstatsa.txt
popleft: left.txt
popright: right.txt
details: YES
## qpAdm version: 1520
seed: 1851625456
*** recommended that inbreed be explicitly set ***
inbreed set NO
left pops:
Norwegian.DG
Croatia_Mesolithic_HG
Turkey_N
Iran_GanjDareh_N
Russia_Samara_EBA_Yamnaya
right pops:
Mbuti.DG
Russia_Ust_Ishim.DG
China_Tianyuan
Goyet_Neanderthal.SG
Russia_Sunghir3.SG
Russia_Kostenki14.SG
Russia_MA1_HG.SG
Georgia_Satsurblia.SG
Russia_DevilsCave_N.SG
Papuan.DG
Switzerland_Bichon.SG
Turkey_Epipaleolithic
Israel_Natufian_published
Russia_Steppe_Eneolithic
ONG.SG
codimension 1
f4info:
f4rank: 3 dof: 11 chisq: 14.849 tail: 0.189498283 dofdiff: 13 chisqdiff: -14.849 taildiff: 1
B:
scale 1.000 1.000 1.000
Russia_Ust_Ishim.DG 0.337 0.171 0.215
China_Tianyuan 0.248 0.410 0.343
Goyet_Neanderthal.SG 0.088 0.001 0.027
Russia_Sunghir3.SG 1.188 -0.052 0.033
Russia_Kostenki14.SG 0.810 0.066 0.304
Russia_MA1_HG.SG 0.713 1.525 1.473
Georgia_Satsurblia.SG -0.258 0.714 1.022
Russia_DevilsCave_N.SG 0.304 0.526 0.460
Papuan.DG 0.287 0.436 0.118
Switzerland_Bichon.SG 3.149 0.175 -2.124
Turkey_Epipaleolithic 0.756 -2.375 1.567
Israel_Natufian_published 0.430 -1.712 0.891
Russia_Steppe_Eneolithic 0.482 1.292 1.554
ONG.SG 0.306 0.472 0.352
A:
scale 276.573 646.383 862.202
Croatia_Mesolithic_HG 1.535 -0.099 -1.345
Turkey_N -0.313 -1.790 0.327
Iran_GanjDareh_N -1.243 0.302 -1.197
Russia_Samara_EBA_Yamnaya -0.015 0.833 0.807
full rank
f4info:
f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 14.849 taildiff: 0.189498283
B:
scale 164.124 323.733 223.584 619.378
Russia_Ust_Ishim.DG 0.281 -0.219 -0.366 0.321
China_Tianyuan 0.259 -0.232 -0.201 0.918
Goyet_Neanderthal.SG 0.004 -0.116 -0.169 -0.157
Russia_Sunghir3.SG 1.171 -0.215 -1.094 0.273
Russia_Kostenki14.SG 0.582 -0.429 -0.993 -0.029
Russia_MA1_HG.SG 0.120 -1.634 -1.165 1.718
Georgia_Satsurblia.SG -0.529 -0.400 0.025 1.160
Russia_DevilsCave_N.SG 0.153 -0.522 -0.400 0.700
Papuan.DG 0.258 -0.414 -0.241 0.559
Switzerland_Bichon.SG 3.403 -1.600 -2.502 -1.265
Turkey_Epipaleolithic 0.319 2.019 -1.497 -1.066
Israel_Natufian_published 0.250 1.521 -0.873 -0.775
Russia_Steppe_Eneolithic 0.069 -1.053 -0.772 2.082
ONG.SG 0.118 -0.566 -0.427 0.424
A:
scale 2.000 2.000 2.000 2.000
Croatia_Mesolithic_HG 2.000 0.000 0.000 0.000
Turkey_N 0.000 2.000 0.000 0.000
Iran_GanjDareh_N 0.000 0.000 2.000 0.000
Russia_Samara_EBA_Yamnaya 0.000 0.000 0.000 2.000
best coefficients: 0.178 0.222 0.158 0.441
totmean: 0.178 0.222 0.158 0.441
boot mean: 0.178 0.222 0.158 0.442
std. errors: 0.022 0.030 0.047 0.052
error covariance (* 1,000,000)
483 -283 494 -693
-283 892 -671 62
494 -671 2199 -2022
-693 62 -2022 2653
summ: Norwegian.DG 4 0.189498 0.178 0.222 0.158 0.442 483 -283 494 -693 892 ...
-671 62 2199 -2022 2653
fixed pat wt dof chisq tail prob
0000 0 11 14.849 0.189498 0.178 0.222 0.158 0.441
0001 1 12 80.295 3.62622e-12 0.290 0.215 0.496 0.000
0010 1 12 25.982 0.010797 0.145 0.270 0.000 0.584
0100 1 12 63.527 5.09724e-09 0.242 0.000 0.313 0.445
1000 1 12 84.768 5.04403e-13 0.000 0.323 -0.049 0.726 infeasible
0011 2 13 338.525 0 0.358 0.642 0.000 0.000
0101 2 13 118.298 4.36462e-19 0.349 0.000 0.651 0.000
0110 2 13 111.086 1.14434e-17 0.197 0.000 0.000 0.803
1001 2 13 354.553 0 0.000 0.463 0.537 0.000
1010 2 13 85.845 8.66065e-13 0.000 0.313 0.000 0.687
1100 2 13 203.370 0 0.000 0.000 0.102 0.898
0111 3 14 711.260 0 1.000 0.000 0.000 0.000
1011 3 14 663.526 0 0.000 1.000 0.000 0.000
1101 3 14 537.182 0 0.000 0.000 1.000 0.000
1110 3 14 206.956 0 0.000 0.000 0.000 1.000
best pat: 0000 0.189498 - -
best pat: 0010 0.010797 chi(nested): 11.133 p-value for nested model: 0.000848214
best pat: 1010 8.66065e-13 chi(nested): 59.863 p-value for nested model: 1.01712e-14
best pat: 1110 2.07767e-36 chi(nested): 121.111 p-value for nested model: 3.61343e-28
coeffs: 0.178 0.222 0.158 0.441
## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)
details: Croatia_Mesolithic_HG Russia_Ust_Ishim.DG 0.001709 2.521699
details: Turkey_N Russia_Ust_Ishim.DG -0.000678 -1.502570
details: Iran_GanjDareh_N Russia_Ust_Ishim.DG -0.001637 -3.170618
details: Russia_Samara_EBA_Yamnaya Russia_Ust_Ishim.DG 0.000518 1.168462
dscore: Russia_Ust_Ishim.DG f4: 0.000123 Z: 0.284891
details: Croatia_Mesolithic_HG China_Tianyuan 0.001580 2.172472
details: Turkey_N China_Tianyuan -0.000715 -1.579597
details: Iran_GanjDareh_N China_Tianyuan -0.000901 -1.744290
details: Russia_Samara_EBA_Yamnaya China_Tianyuan 0.001482 3.230454
dscore: China_Tianyuan f4: 0.000634 Z: 1.432967
details: Croatia_Mesolithic_HG Goyet_Neanderthal.SG 0.000025 0.045305
details: Turkey_N Goyet_Neanderthal.SG -0.000357 -1.146409
details: Iran_GanjDareh_N Goyet_Neanderthal.SG -0.000756 -2.051205
details: Russia_Samara_EBA_Yamnaya Goyet_Neanderthal.SG -0.000253 -0.806146
dscore: Goyet_Neanderthal.SG f4: -0.000307 Z: -1.010984
details: Croatia_Mesolithic_HG Russia_Sunghir3.SG 0.007132 8.744520
details: Turkey_N Russia_Sunghir3.SG -0.000664 -1.321022
details: Iran_GanjDareh_N Russia_Sunghir3.SG -0.004892 -8.613198
details: Russia_Samara_EBA_Yamnaya Russia_Sunghir3.SG 0.000441 0.890637
dscore: Russia_Sunghir3.SG f4: 0.000541 Z: 1.110070
details: Croatia_Mesolithic_HG Russia_Kostenki14.SG 0.003548 4.817840
details: Turkey_N Russia_Kostenki14.SG -0.001326 -2.914008
details: Iran_GanjDareh_N Russia_Kostenki14.SG -0.004442 -8.246377
details: Russia_Samara_EBA_Yamnaya Russia_Kostenki14.SG -0.000046 -0.103358
dscore: Russia_Kostenki14.SG f4: -0.000387 Z: -0.889593
details: Croatia_Mesolithic_HG Russia_MA1_HG.SG 0.000733 0.904218
details: Turkey_N Russia_MA1_HG.SG -0.005048 -10.246927
details: Iran_GanjDareh_N Russia_MA1_HG.SG -0.005209 -8.825434
details: Russia_Samara_EBA_Yamnaya Russia_MA1_HG.SG 0.002775 5.491511
dscore: Russia_MA1_HG.SG f4: -0.000591 Z: -1.210927
details: Croatia_Mesolithic_HG Georgia_Satsurblia.SG -0.003226 -4.142601
details: Turkey_N Georgia_Satsurblia.SG -0.001235 -2.571796
details: Iran_GanjDareh_N Georgia_Satsurblia.SG 0.000110 0.193900
details: Russia_Samara_EBA_Yamnaya Georgia_Satsurblia.SG 0.001873 3.744833
dscore: Georgia_Satsurblia.SG f4: -0.000004 Z: -0.008429
details: Croatia_Mesolithic_HG Russia_DevilsCave_N.SG 0.000934 1.478841
details: Turkey_N Russia_DevilsCave_N.SG -0.001614 -4.016317
details: Iran_GanjDareh_N Russia_DevilsCave_N.SG -0.001788 -3.877527
details: Russia_Samara_EBA_Yamnaya Russia_DevilsCave_N.SG 0.001131 2.752611
dscore: Russia_DevilsCave_N.SG f4: 0.000024 Z: 0.059974
details: Croatia_Mesolithic_HG Papuan.DG 0.001572 2.844178
details: Turkey_N Papuan.DG -0.001279 -3.710294
details: Iran_GanjDareh_N Papuan.DG -0.001080 -2.609812
details: Russia_Samara_EBA_Yamnaya Papuan.DG 0.000902 2.494626
dscore: Papuan.DG f4: 0.000223 Z: 0.645817
details: Croatia_Mesolithic_HG Switzerland_Bichon.SG 0.020731 22.553918
details: Turkey_N Switzerland_Bichon.SG -0.004942 -9.294499
details: Iran_GanjDareh_N Switzerland_Bichon.SG -0.011188 -18.796544
details: Russia_Samara_EBA_Yamnaya Switzerland_Bichon.SG -0.002042 -3.648974
dscore: Switzerland_Bichon.SG f4: -0.000083 Z: -0.153144
details: Croatia_Mesolithic_HG Turkey_Epipaleolithic 0.001943 2.662668
details: Turkey_N Turkey_Epipaleolithic 0.006237 13.190740
details: Iran_GanjDareh_N Turkey_Epipaleolithic -0.006694 -12.606872
details: Russia_Samara_EBA_Yamnaya Turkey_Epipaleolithic -0.001721 -3.580302
dscore: Turkey_Epipaleolithic f4: -0.000089 Z: -0.198396
details: Croatia_Mesolithic_HG Israel_Natufian_published 0.001525 1.758414
details: Turkey_N Israel_Natufian_published 0.004699 9.382068
details: Iran_GanjDareh_N Israel_Natufian_published -0.003907 -6.688765
details: Russia_Samara_EBA_Yamnaya Israel_Natufian_published -0.001251 -2.464489
dscore: Israel_Natufian_published f4: 0.000144 Z: 0.298386
details: Croatia_Mesolithic_HG Russia_Steppe_Eneolithic 0.000421 0.725279
details: Turkey_N Russia_Steppe_Eneolithic -0.003254 -8.639605
details: Iran_GanjDareh_N Russia_Steppe_Eneolithic -0.003452 -8.220420
details: Russia_Samara_EBA_Yamnaya Russia_Steppe_Eneolithic 0.003361 8.831271
dscore: Russia_Steppe_Eneolithic f4: 0.000289 Z: 0.812747
details: Croatia_Mesolithic_HG ONG.SG 0.000721 1.253620
details: Turkey_N ONG.SG -0.001748 -5.030381
details: Iran_GanjDareh_N ONG.SG -0.001911 -4.596268
details: Russia_Samara_EBA_Yamnaya ONG.SG 0.000685 1.856787
dscore: ONG.SG f4: -0.000260 Z: -0.748523
gendstat: Mbuti.DG Russia_Ust_Ishim.DG 0.285
gendstat: Mbuti.DG China_Tianyuan 1.433
gendstat: Mbuti.DG Goyet_Neanderthal.SG -1.011
gendstat: Mbuti.DG Russia_Sunghir3.SG 1.110
gendstat: Mbuti.DG Russia_Kostenki14.SG -0.890
gendstat: Mbuti.DG Russia_MA1_HG.SG -1.211
gendstat: Mbuti.DG Georgia_Satsurblia.SG -0.008
gendstat: Mbuti.DG Russia_DevilsCave_N.SG 0.060
gendstat: Mbuti.DG Papuan.DG 0.646
gendstat: Mbuti.DG Switzerland_Bichon.SG -0.153
gendstat: Mbuti.DG Turkey_Epipaleolithic -0.198
gendstat: Mbuti.DG Israel_Natufian_published 0.298
gendstat: Mbuti.DG Russia_Steppe_Eneolithic 0.813
gendstat: Mbuti.DG ONG.SG -0.749
gendstat: Russia_Ust_Ishim.DG China_Tianyuan 1.033
gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG -0.847
gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG 0.785
gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG -0.996
gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG -1.353
gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG -0.234
gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG -0.213
gendstat: Russia_Ust_Ishim.DG Papuan.DG 0.236
gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG -0.364
gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic -0.400
gendstat: Russia_Ust_Ishim.DG Israel_Natufian_published 0.037
gendstat: Russia_Ust_Ishim.DG Russia_Steppe_Eneolithic 0.378
gendstat: Russia_Ust_Ishim.DG ONG.SG -0.887
gendstat: China_Tianyuan Goyet_Neanderthal.SG -1.859
gendstat: China_Tianyuan Russia_Sunghir3.SG -0.166
gendstat: China_Tianyuan Russia_Kostenki14.SG -1.975
gendstat: China_Tianyuan Russia_MA1_HG.SG -2.211
gendstat: China_Tianyuan Georgia_Satsurblia.SG -1.143
gendstat: China_Tianyuan Russia_DevilsCave_N.SG -1.438
gendstat: China_Tianyuan Papuan.DG -0.986
gendstat: China_Tianyuan Switzerland_Bichon.SG -1.187
gendstat: China_Tianyuan Turkey_Epipaleolithic -1.304
gendstat: China_Tianyuan Israel_Natufian_published -0.852
gendstat: China_Tianyuan Russia_Steppe_Eneolithic -0.736
gendstat: China_Tianyuan ONG.SG -2.110
gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG 1.529
gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG -0.156
gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG -0.502
gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG 0.546
gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG 0.661
gendstat: Goyet_Neanderthal.SG Papuan.DG 1.169
gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG 0.375
gendstat: Goyet_Neanderthal.SG Turkey_Epipaleolithic 0.424
gendstat: Goyet_Neanderthal.SG Israel_Natufian_published 0.823
gendstat: Goyet_Neanderthal.SG Russia_Steppe_Eneolithic 1.306
gendstat: Goyet_Neanderthal.SG ONG.SG 0.104
gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG -1.813
gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG -2.042
gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG -0.970
gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG -0.993
gendstat: Russia_Sunghir3.SG Papuan.DG -0.673
gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG -1.071
gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic -1.163
gendstat: Russia_Sunghir3.SG Israel_Natufian_published -0.638
gendstat: Russia_Sunghir3.SG Russia_Steppe_Eneolithic -0.511
gendstat: Russia_Sunghir3.SG ONG.SG -1.714
gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.389
gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG 0.702
gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG 0.852
gendstat: Russia_Kostenki14.SG Papuan.DG 1.394
gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 0.542
gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic 0.554
gendstat: Russia_Kostenki14.SG Israel_Natufian_published 0.913
gendstat: Russia_Kostenki14.SG Russia_Steppe_Eneolithic 1.520
gendstat: Russia_Kostenki14.SG ONG.SG 0.287
gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 1.060
gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG 1.195
gendstat: Russia_MA1_HG.SG Papuan.DG 1.666
gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG 0.856
gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic 0.885
gendstat: Russia_MA1_HG.SG Israel_Natufian_published 1.211
gendstat: Russia_MA1_HG.SG Russia_Steppe_Eneolithic 1.968
gendstat: Russia_MA1_HG.SG ONG.SG 0.709
gendstat: Georgia_Satsurblia.SG Russia_DevilsCave_N.SG 0.053
gendstat: Georgia_Satsurblia.SG Papuan.DG 0.459
gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG -0.128
gendstat: Georgia_Satsurblia.SG Turkey_Epipaleolithic -0.149
gendstat: Georgia_Satsurblia.SG Israel_Natufian_published 0.251
gendstat: Georgia_Satsurblia.SG Russia_Steppe_Eneolithic 0.634
gendstat: Georgia_Satsurblia.SG ONG.SG -0.529
gendstat: Russia_DevilsCave_N.SG Papuan.DG 0.533
gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -0.192
gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic -0.220
gendstat: Russia_DevilsCave_N.SG Israel_Natufian_published 0.219
gendstat: Russia_DevilsCave_N.SG Russia_Steppe_Eneolithic 0.646
gendstat: Russia_DevilsCave_N.SG ONG.SG -0.766
gendstat: Papuan.DG Switzerland_Bichon.SG -0.567
gendstat: Papuan.DG Turkey_Epipaleolithic -0.643
gendstat: Papuan.DG Israel_Natufian_published -0.155
gendstat: Papuan.DG Russia_Steppe_Eneolithic 0.177
gendstat: Papuan.DG ONG.SG -1.532
gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic -0.010
gendstat: Switzerland_Bichon.SG Israel_Natufian_published 0.359
gendstat: Switzerland_Bichon.SG Russia_Steppe_Eneolithic 0.719
gendstat: Switzerland_Bichon.SG ONG.SG -0.340
gendstat: Turkey_Epipaleolithic Israel_Natufian_published 0.406
gendstat: Turkey_Epipaleolithic Russia_Steppe_Eneolithic 0.786
gendstat: Turkey_Epipaleolithic ONG.SG -0.363
gendstat: Israel_Natufian_published Russia_Steppe_Eneolithic 0.282
gendstat: Israel_Natufian_published ONG.SG -0.775
gendstat: Russia_Steppe_Eneolithic ONG.SG -1.486
##end of qpAdm: 25.298 seconds cpu 1.597 Mbytes in use
Model3:
qpAdm: parameter file: parqpadm.txt
### THE INPUT PARAMETERS
##PARAMETER NAME: VALUE
fstatsname: fstatsa.txt
popleft: left.txt
popright: right.txt
details: YES
## qpAdm version: 1520
seed: 1852199286
*** recommended that inbreed be explicitly set ***
inbreed set NO
left pops:
Norwegian.DG
Romania_C_oHG.SG
Turkey_N
Georgia_Kotias.SG
Russia_Samara_EBA_Yamnaya
right pops:
Mbuti.DG
Russia_Ust_Ishim.DG
China_Tianyuan
Goyet_Neanderthal.SG
Russia_Sunghir3.SG
Russia_Kostenki14.SG
Russia_MA1_HG.SG
Georgia_Satsurblia.SG
Russia_DevilsCave_N.SG
Papuan.DG
Switzerland_Bichon.SG
Turkey_Epipaleolithic
Israel_Natufian_published
Russia_Steppe_Eneolithic
ONG.SG
codimension 1
f4info:
f4rank: 3 dof: 11 chisq: 12.942 tail: 0.297165253 dofdiff: 13 chisqdiff: -12.942 taildiff: 1
B:
scale 1.000 1.000 1.000
Russia_Ust_Ishim.DG 0.309 0.306 -0.052
China_Tianyuan 0.145 0.438 0.758
Goyet_Neanderthal.SG 0.098 0.044 -0.134
Russia_Sunghir3.SG 0.748 0.301 -0.250
Russia_Kostenki14.SG 0.766 0.341 -0.165
Russia_MA1_HG.SG 0.651 1.713 1.614
Georgia_Satsurblia.SG -2.182 0.848 -1.403
Russia_DevilsCave_N.SG 0.035 0.617 0.326
Papuan.DG 0.214 0.487 0.332
Switzerland_Bichon.SG 2.452 0.999 -2.345
Turkey_Epipaleolithic 0.983 -1.932 0.105
Israel_Natufian_published 0.693 -1.489 0.568
Russia_Steppe_Eneolithic -0.093 1.413 1.582
ONG.SG 0.164 0.541 0.437
A:
scale 426.547 602.803 1181.924
Romania_C_oHG.SG 0.857 0.043 -1.440
Turkey_N -0.251 -1.909 0.405
Georgia_Kotias.SG -1.765 0.055 -0.933
Russia_Samara_EBA_Yamnaya -0.293 0.594 0.944
full rank
f4info:
f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 12.942 taildiff: 0.297165253
B:
scale 369.240 323.733 243.968 619.378
Russia_Ust_Ishim.DG 0.484 -0.219 -0.208 0.321
China_Tianyuan 0.107 -0.232 -0.172 0.918
Goyet_Neanderthal.SG 0.045 -0.116 -0.112 -0.157
Russia_Sunghir3.SG 1.105 -0.215 -0.534 0.273
Russia_Kostenki14.SG 0.783 -0.429 -0.698 -0.029
Russia_MA1_HG.SG -0.090 -1.634 -0.883 1.718
Georgia_Satsurblia.SG -0.669 -0.400 2.684 1.160
Russia_DevilsCave_N.SG 0.018 -0.522 -0.036 0.700
Papuan.DG 0.176 -0.414 -0.220 0.559
Switzerland_Bichon.SG 3.181 -1.600 -1.904 -1.265
Turkey_Epipaleolithic 1.005 2.019 -0.878 -1.066
Israel_Natufian_published 0.305 1.521 -0.795 -0.775
Russia_Steppe_Eneolithic -0.450 -1.053 -0.025 2.082
ONG.SG -0.095 -0.566 -0.288 0.424
A:
scale 2.000 2.000 2.000 2.000
Romania_C_oHG.SG 2.000 0.000 0.000 0.000
Turkey_N 0.000 2.000 0.000 0.000
Georgia_Kotias.SG 0.000 0.000 2.000 0.000
Russia_Samara_EBA_Yamnaya 0.000 0.000 0.000 2.000
best coefficients: 0.318 0.156 0.054 0.472
totmean: 0.318 0.156 0.054 0.472
boot mean: 0.319 0.155 0.054 0.472
std. errors: 0.042 0.035 0.034 0.050
error covariance (* 1,000,000)
1789 -971 536 -1354
-971 1227 -414 159
536 -414 1175 -1297
-1354 159 -1297 2492
summ: Norwegian.DG 4 0.297165 0.319 0.155 0.054 0.472 1789 -971 536 -1354 1227 ...
-414 159 1175 -1297 2492
fixed pat wt dof chisq tail prob
0000 0 11 12.942 0.297165 0.318 0.156 0.054 0.472
0001 1 12 84.968 4.61621e-13 0.575 0.110 0.315 0.000
0010 1 12 15.457 0.217402 0.295 0.175 0.000 0.530
0100 1 12 30.517 0.00233279 0.440 0.000 0.102 0.458
1000 1 12 82.497 1.37556e-12 0.000 0.322 -0.059 0.737 infeasible
0011 2 13 190.670 0 0.797 0.203 0.000 0.000
0101 2 13 90.049 1.36762e-13 0.659 0.000 0.341 0.000
0110 2 13 38.951 0.000203578 0.421 0.000 0.000 0.579
1001 2 13 360.727 0 0.000 0.458 0.542 0.000
1010 2 13 86.067 7.85775e-13 0.000 0.313 0.000 0.687
1100 2 13 207.117 0 0.000 0.000 -0.034 1.034 infeasible
0111 3 14 203.509 0 1.000 0.000 0.000 0.000
1011 3 14 663.352 0 0.000 1.000 0.000 0.000
1101 3 14 457.217 0 0.000 0.000 1.000 0.000
1110 3 14 206.772 0 0.000 0.000 0.000 1.000
best pat: 0000 0.297165 - -
best pat: 0010 0.217402 chi(nested): 2.515 p-value for nested model: 0.11275
best pat: 0110 0.000203578 chi(nested): 23.494 p-value for nested model: 1.2529e-06
best pat: 0111 1.05384e-35 chi(nested): 164.558 p-value for nested model: 1.14275e-37
coeffs: 0.318 0.156 0.054 0.472
## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)
details: Romania_C_oHG.SG Russia_Ust_Ishim.DG 0.001311 2.164739
details: Turkey_N Russia_Ust_Ishim.DG -0.000678 -1.502570
details: Georgia_Kotias.SG Russia_Ust_Ishim.DG -0.000854 -1.427329
details: Russia_Samara_EBA_Yamnaya Russia_Ust_Ishim.DG 0.000518 1.168462
dscore: Russia_Ust_Ishim.DG f4: 0.000510 Z: 1.153537
details: Romania_C_oHG.SG China_Tianyuan 0.000289 0.453771
details: Turkey_N China_Tianyuan -0.000715 -1.579597
details: Georgia_Kotias.SG China_Tianyuan -0.000704 -1.082388
details: Russia_Samara_EBA_Yamnaya China_Tianyuan 0.001482 3.230454
dscore: China_Tianyuan f4: 0.000643 Z: 1.422555
details: Romania_C_oHG.SG Goyet_Neanderthal.SG 0.000121 0.281713
details: Turkey_N Goyet_Neanderthal.SG -0.000357 -1.146409
details: Georgia_Kotias.SG Goyet_Neanderthal.SG -0.000458 -1.087974
details: Russia_Samara_EBA_Yamnaya Goyet_Neanderthal.SG -0.000253 -0.806146
dscore: Goyet_Neanderthal.SG f4: -0.000162 Z: -0.528749
details: Romania_C_oHG.SG Russia_Sunghir3.SG 0.002992 4.151261
details: Turkey_N Russia_Sunghir3.SG -0.000664 -1.321022
details: Georgia_Kotias.SG Russia_Sunghir3.SG -0.002188 -3.280526
details: Russia_Samara_EBA_Yamnaya Russia_Sunghir3.SG 0.000441 0.890637
dscore: Russia_Sunghir3.SG f4: 0.000939 Z: 1.857743
details: Romania_C_oHG.SG Russia_Kostenki14.SG 0.002120 3.371879
details: Turkey_N Russia_Kostenki14.SG -0.001326 -2.914008
details: Georgia_Kotias.SG Russia_Kostenki14.SG -0.002861 -4.314401
details: Russia_Samara_EBA_Yamnaya Russia_Kostenki14.SG -0.000046 -0.103358
dscore: Russia_Kostenki14.SG f4: 0.000292 Z: 0.661412
details: Romania_C_oHG.SG Russia_MA1_HG.SG -0.000244 -0.353286
details: Turkey_N Russia_MA1_HG.SG -0.005048 -10.246927
details: Georgia_Kotias.SG Russia_MA1_HG.SG -0.003618 -4.916632
details: Russia_Samara_EBA_Yamnaya Russia_MA1_HG.SG 0.002775 5.491511
dscore: Russia_MA1_HG.SG f4: 0.000252 Z: 0.507413
details: Romania_C_oHG.SG Georgia_Satsurblia.SG -0.001811 -2.735914
details: Turkey_N Georgia_Satsurblia.SG -0.001235 -2.571796
details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.011001 14.398318
details: Russia_Samara_EBA_Yamnaya Georgia_Satsurblia.SG 0.001873 3.744833
dscore: Georgia_Satsurblia.SG f4: 0.000709 Z: 1.457294
details: Romania_C_oHG.SG Russia_DevilsCave_N.SG 0.000049 0.086448
details: Turkey_N Russia_DevilsCave_N.SG -0.001614 -4.016317
details: Georgia_Kotias.SG Russia_DevilsCave_N.SG -0.000146 -0.262647
details: Russia_Samara_EBA_Yamnaya Russia_DevilsCave_N.SG 0.001131 2.752611
dscore: Russia_DevilsCave_N.SG f4: 0.000291 Z: 0.706542
details: Romania_C_oHG.SG Papuan.DG 0.000476 0.962982
details: Turkey_N Papuan.DG -0.001279 -3.710294
details: Georgia_Kotias.SG Papuan.DG -0.000903 -1.820487
details: Russia_Samara_EBA_Yamnaya Papuan.DG 0.000902 2.494626
dscore: Papuan.DG f4: 0.000330 Z: 0.944758
details: Romania_C_oHG.SG Switzerland_Bichon.SG 0.008614 10.853485
details: Turkey_N Switzerland_Bichon.SG -0.004942 -9.294499
details: Georgia_Kotias.SG Switzerland_Bichon.SG -0.007805 -10.591408
details: Russia_Samara_EBA_Yamnaya Switzerland_Bichon.SG -0.002042 -3.648974
dscore: Switzerland_Bichon.SG f4: 0.000587 Z: 1.057615
details: Romania_C_oHG.SG Turkey_Epipaleolithic 0.002722 4.090180
details: Turkey_N Turkey_Epipaleolithic 0.006237 13.190740
details: Georgia_Kotias.SG Turkey_Epipaleolithic -0.003597 -5.466038
details: Russia_Samara_EBA_Yamnaya Turkey_Epipaleolithic -0.001721 -3.580302
dscore: Turkey_Epipaleolithic f4: 0.000830 Z: 1.788079
details: Romania_C_oHG.SG Israel_Natufian_published 0.000827 1.156395
details: Turkey_N Israel_Natufian_published 0.004699 9.382068
details: Georgia_Kotias.SG Israel_Natufian_published -0.003257 -4.363810
details: Russia_Samara_EBA_Yamnaya Israel_Natufian_published -0.001251 -2.464489
dscore: Israel_Natufian_published f4: 0.000228 Z: 0.456507
details: Romania_C_oHG.SG Russia_Steppe_Eneolithic -0.001219 -2.461080
details: Turkey_N Russia_Steppe_Eneolithic -0.003254 -8.639605
details: Georgia_Kotias.SG Russia_Steppe_Eneolithic -0.000104 -0.192020
details: Russia_Samara_EBA_Yamnaya Russia_Steppe_Eneolithic 0.003361 8.831271
dscore: Russia_Steppe_Eneolithic f4: 0.000687 Z: 1.882107
details: Romania_C_oHG.SG ONG.SG -0.000256 -0.493982
details: Turkey_N ONG.SG -0.001748 -5.030381
details: Georgia_Kotias.SG ONG.SG -0.001181 -2.255744
details: Russia_Samara_EBA_Yamnaya ONG.SG 0.000685 1.856787
dscore: ONG.SG f4: -0.000094 Z: -0.256032
gendstat: Mbuti.DG Russia_Ust_Ishim.DG 1.154
gendstat: Mbuti.DG China_Tianyuan 1.423
gendstat: Mbuti.DG Goyet_Neanderthal.SG -0.529
gendstat: Mbuti.DG Russia_Sunghir3.SG 1.858
gendstat: Mbuti.DG Russia_Kostenki14.SG 0.661
gendstat: Mbuti.DG Russia_MA1_HG.SG 0.507
gendstat: Mbuti.DG Georgia_Satsurblia.SG 1.457
gendstat: Mbuti.DG Russia_DevilsCave_N.SG 0.707
gendstat: Mbuti.DG Papuan.DG 0.945
gendstat: Mbuti.DG Switzerland_Bichon.SG 1.058
gendstat: Mbuti.DG Turkey_Epipaleolithic 1.788
gendstat: Mbuti.DG Israel_Natufian_published 0.457
gendstat: Mbuti.DG Russia_Steppe_Eneolithic 1.882
gendstat: Mbuti.DG ONG.SG -0.256
gendstat: Russia_Ust_Ishim.DG China_Tianyuan 0.258
gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG -1.278
gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG 0.778
gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG -0.406
gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG -0.471
gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG 0.352
gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG -0.460
gendstat: Russia_Ust_Ishim.DG Papuan.DG -0.409
gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG 0.132
gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic 0.592
gendstat: Russia_Ust_Ishim.DG Israel_Natufian_published -0.489
gendstat: Russia_Ust_Ishim.DG Russia_Steppe_Eneolithic 0.386
gendstat: Russia_Ust_Ishim.DG ONG.SG -1.369
gendstat: China_Tianyuan Goyet_Neanderthal.SG -1.547
gendstat: China_Tianyuan Russia_Sunghir3.SG 0.521
gendstat: China_Tianyuan Russia_Kostenki14.SG -0.667
gendstat: China_Tianyuan Russia_MA1_HG.SG -0.686
gendstat: China_Tianyuan Georgia_Satsurblia.SG 0.118
gendstat: China_Tianyuan Russia_DevilsCave_N.SG -0.810
gendstat: China_Tianyuan Papuan.DG -0.750
gendstat: China_Tianyuan Switzerland_Bichon.SG -0.088
gendstat: China_Tianyuan Turkey_Epipaleolithic 0.338
gendstat: China_Tianyuan Israel_Natufian_published -0.695
gendstat: China_Tianyuan Russia_Steppe_Eneolithic 0.094
gendstat: China_Tianyuan ONG.SG -1.689
gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG 1.907
gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG 0.847
gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG 0.714
gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG 1.553
gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG 0.873
gendstat: Goyet_Neanderthal.SG Papuan.DG 1.070
gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG 1.207
gendstat: Goyet_Neanderthal.SG Turkey_Epipaleolithic 1.855
gendstat: Goyet_Neanderthal.SG Israel_Natufian_published 0.680
gendstat: Goyet_Neanderthal.SG Russia_Steppe_Eneolithic 1.788
gendstat: Goyet_Neanderthal.SG ONG.SG 0.147
gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG -1.251
gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG -1.220
gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG -0.408
gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG -1.204
gendstat: Russia_Sunghir3.SG Papuan.DG -1.248
gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG -0.594
gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic -0.195
gendstat: Russia_Sunghir3.SG Israel_Natufian_published -1.139
gendstat: Russia_Sunghir3.SG Russia_Steppe_Eneolithic -0.505
gendstat: Russia_Sunghir3.SG ONG.SG -2.157
gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.077
gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG 0.749
gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG -0.003
gendstat: Russia_Kostenki14.SG Papuan.DG 0.084
gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 0.509
gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic 0.964
gendstat: Russia_Kostenki14.SG Israel_Natufian_published -0.109
gendstat: Russia_Kostenki14.SG Russia_Steppe_Eneolithic 0.856
gendstat: Russia_Kostenki14.SG ONG.SG -0.838
gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 0.813
gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG 0.073
gendstat: Russia_MA1_HG.SG Papuan.DG 0.156
gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG 0.562
gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic 0.988
gendstat: Russia_MA1_HG.SG Israel_Natufian_published -0.039
gendstat: Russia_MA1_HG.SG Russia_Steppe_Eneolithic 0.974
gendstat: Russia_MA1_HG.SG ONG.SG -0.723
gendstat: Georgia_Satsurblia.SG Russia_DevilsCave_N.SG -0.787
gendstat: Georgia_Satsurblia.SG Papuan.DG -0.761
gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG -0.191
gendstat: Georgia_Satsurblia.SG Turkey_Epipaleolithic 0.212
gendstat: Georgia_Satsurblia.SG Israel_Natufian_published -0.803
gendstat: Georgia_Satsurblia.SG Russia_Steppe_Eneolithic -0.046
gendstat: Georgia_Satsurblia.SG ONG.SG -1.666
gendstat: Russia_DevilsCave_N.SG Papuan.DG 0.104
gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG 0.519
gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic 1.021
gendstat: Russia_DevilsCave_N.SG Israel_Natufian_published -0.113
gendstat: Russia_DevilsCave_N.SG Russia_Steppe_Eneolithic 0.936
gendstat: Russia_DevilsCave_N.SG ONG.SG -1.033
gendstat: Papuan.DG Switzerland_Bichon.SG 0.465
gendstat: Papuan.DG Turkey_Epipaleolithic 1.017
gendstat: Papuan.DG Israel_Natufian_published -0.199
gendstat: Papuan.DG Russia_Steppe_Eneolithic 0.935
gendstat: Papuan.DG ONG.SG -1.290
gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic 0.403
gendstat: Switzerland_Bichon.SG Israel_Natufian_published -0.556
gendstat: Switzerland_Bichon.SG Russia_Steppe_Eneolithic 0.187
gendstat: Switzerland_Bichon.SG ONG.SG -1.270
gendstat: Turkey_Epipaleolithic Israel_Natufian_published -1.035
gendstat: Turkey_Epipaleolithic Russia_Steppe_Eneolithic -0.291
gendstat: Turkey_Epipaleolithic ONG.SG -1.925
gendstat: Israel_Natufian_published Russia_Steppe_Eneolithic 0.888
gendstat: Israel_Natufian_published ONG.SG -0.613
gendstat: Russia_Steppe_Eneolithic ONG.SG -2.064
##end of qpAdm: 24.984 seconds cpu 1.597 Mbytes in use
In g25, Norwegian show nil preference for Ganj_Dareh and Kotias, and the %s are also completely different:
https://i.ibb.co/9pXNXpv/Screenshot-2022-02-28-at-11-14-02-Vahaduo-Admixture-JS-21-01.png
https://i.ibb.co/5hx5764/Screenshot-2022-02-28-at-11-15-22-Vahaduo-Admixture-JS-21-01.png
Concluding thoughts:
Why is this happening? Do Northern Euros really score Iran_N or is it a stand-in for something else?
Opinions greatly appreciated.