Eurafricanid
10-02-2023, 07:11 PM
Run without ADD DIST COL or REDUCE and with AGGREGATE, please.
I had the idea to make this one, because I was using PCA recently and these populations work really well as bases.
Components:
Northeast_Asian,0.0533549,-0.2832058,0.0489314,-0.0138486,-0.0365452,-0.0163501,0.012103,0.0135861,-0.0031189,-0.0017312,-0.0304479,-0.0015361,-0.0002787,-0.0029245,0.0054968,-0.0002485,-0.0019719,0.0001899,0.0021055,0.0083635,-0.0121661,-0.0018858,-0.0081652,-0.0029522,0.0004492
Northeast_Asian,0.0476917,-0.4066181,0.1557885,0.0023902,-0.1594452,-0.0882129,0.0285066,0.0433367,0.0310876,0.0128477, 0.1028569,0.0094115,-0.0040734,-0.0261619,-0.0219731,-0.0123307,-0.0010952,0.0134165,0.0268365,-0.0008505,0.0431363,-0.0118954,0.0336096,0.0003977,0.0135556
Northeast_Asian,0.0191873,-0.452491,-0.0207956,-0.0709677,0.1010297,0.0476506,0.0002686,-0.0087359,-0.0151054,-0.0067167,-0.0306217,-0.0036181,0.0057764,-0.0040696,-0.004188,0.0026517,-0.0003353,0.0022441,-0.0006644,-0.0156684,0.0137256,0.0086554,0.0126241,0.0002066,-0.0026517
Northeastern_European,0.1354494,0.122473,0.0887742 ,0.089471,0.043208,0.0340246,0.0125966,0.0140762,-0.002168,-0.0368842,-0.0035728,-0.0138178,0.0232208,0.031378,-0.010559,0.0040572,0.0027118,-0.0003802,0.0016088,0.0043022,-0.0027952,-0.0057128,0.0090708,-0.0093264,0.0026346
Northwestern_European,0.1306689,0.1342528,0.062979 3,0.04845,0.0387149,0.0175423,0.001786,0.0039229,0 .0050312,0.001786,-0.0068367,0.0048108,-0.0119078,-0.0108308,0.0223531,0.0030364,-0.0123864,0.0034712,0.0026774,0.0003001,0.0049539, 0.0022504,-0.0021567,0.0100374,-0.0005988
Northwestern_European,0.1333605,0.1340977,0.061168 9,0.0488642,0.037788,0.0193517,0.0032928,0.0047129 ,0.0035683,0.0029265,-0.0069712,0.0058395,-0.0141892,-0.0140763,0.0259353,0.0052146,-0.0111456,0.0018944,0.0005974,0.0017758,0.0051145, 0.0012787,0.0002929,0.0144074,0.0006607
Southern_European,0.1216872,0.1672855,0.0284897,-0.0506523,0.060151,-0.0221337,-0.0039523,0.0024964,0.0415743,0.077351,-5.9e-05,0.0166487,-0.0286645,-0.012974,-0.013572,-0.0030013,0.0114027,-0.0013475,0.0016798,-0.0129947,-0.0021212,-0.0011018,-0.010084,-0.021383,0.0003375
Caucasian,0.102441,0.121864,-0.057699,-0.047804,-0.040007,-0.010319,0.013161,-0.007615,-0.056244,-0.014397,-0.002598,0.006894,-0.020812,-0.004954,-0.000271,-0.018563,0.009779,-0.010388,-0.011313,0.015758,0.019091,-0.000618,0.001972,-0.005663,-0.003233
MENA,-0.1025221,0.131656,-0.0023166,-0.0759511,0.0310606,-0.0356582,-0.0335058,0.012016,0.0766524,0.0315659,0.0088154,-0.0092596,0.0247308,-0.0204174,0.0203483,-0.0157212,0.0001119,-0.0288305,-0.0534217,0.0119165,-0.0208205,-0.0511129,0.0307414,-0.0051899,0.0074671
MENA,0.041925,0.1439232,-0.0598156,-0.1169808,-0.0093179,-0.0480622,-0.0141008,-0.0087432,0.05154,-0.0052038,0.0158689,-0.0305729,0.0629496,0.004855,0.0043959,0.0288529,-0.0199706,0.00366,-0.0040153,0.029,0.0109668,0.0152299,-0.0039166,0.0071025,-0.0083092
The components are:
Northwestern_European, Northeastern_European, Southern_European, Caucasian and MENA + some asian samples I didn't put in the plot for obvious reasons.
Heres the PCA plot for this one:
https://i.imgur.com/PWx9Fom.png
LATAM:
Sub_Saharan_African:Eastern_African,-0.577083,0.0507765,-0.0003773,-0.0075098,-0.0053855,-0.0016735,-0.0176848,0.0204222,0.081145,-0.0969495,-0.02107,0.022742,-0.0383172,-0.0011698,0.0101452,-0.021347,0.0186125,-0.0094382,0.0241968,-0.0241678,0.002402,0.003308,0.001479,0.0009038,0.0 096995
Sub_Saharan_African:Eastern_African_Hunter-Gatherer,-0.511066,0.043668,0.000754,0.000969,-0.00277,-0.011435,0.050997,-0.045229,0.089172,-0.087838,-0.012991,-0.002997,-0.031219,0.000688,0.02158,-0.029965,0.027772,0.039273,0.00176,-0.009004,0.000374,0.006183,-0.003451,-0.00241,-0.000838
Sub_Saharan_African:Western_African:1,-0.62629,0.063666,0.021002,0.01692,-0.000213,0.009525,-0.009599,0.01823,-0.031544,0.014775,0.001624,-0.001579,-0.003625,0.000688,-0.009114,0.006568,-0.00323,0.009297,-0.005946,0.00457,0.000893,-0.000694,0.001071,-0.000287,0.000497
Sub_Saharan_African:Western_African:2,-0.6300625,0.0625011,0.022113,0.0167079,0.0005035,0 .0124741,-0.044417,0.0477673,-0.0488813,0.0327694,0.0046205,0.0007904,0.0230561, 0.0009509,0.0125232,-0.0096067,0.0070763,0.0004491,0.006022,-0.00299,0.0015542,0.0023156,-0.0017592,-0.0004711,-0.0004246
Sub_Saharan_African:Western_African_Hunter-Gatherer,-0.6069618,0.0545845,0.0136708,0.0278588,-0.0026928,0.0006272,0.1370698,-0.1067262,0.0100218,-0.0019588,-0.0007715,-0.0317718,-0.0225592,-0.0023052,0.00302,-0.0038452,0.0092245,0.0172612,-0.0046192,-0.0013757,-0.0025582,-0.002442,6.18e-05,-0.0001508,-0.002874
I had the idea to make this one, because I was using PCA recently and these populations work really well as bases.
Components:
Northeast_Asian,0.0533549,-0.2832058,0.0489314,-0.0138486,-0.0365452,-0.0163501,0.012103,0.0135861,-0.0031189,-0.0017312,-0.0304479,-0.0015361,-0.0002787,-0.0029245,0.0054968,-0.0002485,-0.0019719,0.0001899,0.0021055,0.0083635,-0.0121661,-0.0018858,-0.0081652,-0.0029522,0.0004492
Northeast_Asian,0.0476917,-0.4066181,0.1557885,0.0023902,-0.1594452,-0.0882129,0.0285066,0.0433367,0.0310876,0.0128477, 0.1028569,0.0094115,-0.0040734,-0.0261619,-0.0219731,-0.0123307,-0.0010952,0.0134165,0.0268365,-0.0008505,0.0431363,-0.0118954,0.0336096,0.0003977,0.0135556
Northeast_Asian,0.0191873,-0.452491,-0.0207956,-0.0709677,0.1010297,0.0476506,0.0002686,-0.0087359,-0.0151054,-0.0067167,-0.0306217,-0.0036181,0.0057764,-0.0040696,-0.004188,0.0026517,-0.0003353,0.0022441,-0.0006644,-0.0156684,0.0137256,0.0086554,0.0126241,0.0002066,-0.0026517
Northeastern_European,0.1354494,0.122473,0.0887742 ,0.089471,0.043208,0.0340246,0.0125966,0.0140762,-0.002168,-0.0368842,-0.0035728,-0.0138178,0.0232208,0.031378,-0.010559,0.0040572,0.0027118,-0.0003802,0.0016088,0.0043022,-0.0027952,-0.0057128,0.0090708,-0.0093264,0.0026346
Northwestern_European,0.1306689,0.1342528,0.062979 3,0.04845,0.0387149,0.0175423,0.001786,0.0039229,0 .0050312,0.001786,-0.0068367,0.0048108,-0.0119078,-0.0108308,0.0223531,0.0030364,-0.0123864,0.0034712,0.0026774,0.0003001,0.0049539, 0.0022504,-0.0021567,0.0100374,-0.0005988
Northwestern_European,0.1333605,0.1340977,0.061168 9,0.0488642,0.037788,0.0193517,0.0032928,0.0047129 ,0.0035683,0.0029265,-0.0069712,0.0058395,-0.0141892,-0.0140763,0.0259353,0.0052146,-0.0111456,0.0018944,0.0005974,0.0017758,0.0051145, 0.0012787,0.0002929,0.0144074,0.0006607
Southern_European,0.1216872,0.1672855,0.0284897,-0.0506523,0.060151,-0.0221337,-0.0039523,0.0024964,0.0415743,0.077351,-5.9e-05,0.0166487,-0.0286645,-0.012974,-0.013572,-0.0030013,0.0114027,-0.0013475,0.0016798,-0.0129947,-0.0021212,-0.0011018,-0.010084,-0.021383,0.0003375
Caucasian,0.102441,0.121864,-0.057699,-0.047804,-0.040007,-0.010319,0.013161,-0.007615,-0.056244,-0.014397,-0.002598,0.006894,-0.020812,-0.004954,-0.000271,-0.018563,0.009779,-0.010388,-0.011313,0.015758,0.019091,-0.000618,0.001972,-0.005663,-0.003233
MENA,-0.1025221,0.131656,-0.0023166,-0.0759511,0.0310606,-0.0356582,-0.0335058,0.012016,0.0766524,0.0315659,0.0088154,-0.0092596,0.0247308,-0.0204174,0.0203483,-0.0157212,0.0001119,-0.0288305,-0.0534217,0.0119165,-0.0208205,-0.0511129,0.0307414,-0.0051899,0.0074671
MENA,0.041925,0.1439232,-0.0598156,-0.1169808,-0.0093179,-0.0480622,-0.0141008,-0.0087432,0.05154,-0.0052038,0.0158689,-0.0305729,0.0629496,0.004855,0.0043959,0.0288529,-0.0199706,0.00366,-0.0040153,0.029,0.0109668,0.0152299,-0.0039166,0.0071025,-0.0083092
The components are:
Northwestern_European, Northeastern_European, Southern_European, Caucasian and MENA + some asian samples I didn't put in the plot for obvious reasons.
Heres the PCA plot for this one:
https://i.imgur.com/PWx9Fom.png
LATAM:
Sub_Saharan_African:Eastern_African,-0.577083,0.0507765,-0.0003773,-0.0075098,-0.0053855,-0.0016735,-0.0176848,0.0204222,0.081145,-0.0969495,-0.02107,0.022742,-0.0383172,-0.0011698,0.0101452,-0.021347,0.0186125,-0.0094382,0.0241968,-0.0241678,0.002402,0.003308,0.001479,0.0009038,0.0 096995
Sub_Saharan_African:Eastern_African_Hunter-Gatherer,-0.511066,0.043668,0.000754,0.000969,-0.00277,-0.011435,0.050997,-0.045229,0.089172,-0.087838,-0.012991,-0.002997,-0.031219,0.000688,0.02158,-0.029965,0.027772,0.039273,0.00176,-0.009004,0.000374,0.006183,-0.003451,-0.00241,-0.000838
Sub_Saharan_African:Western_African:1,-0.62629,0.063666,0.021002,0.01692,-0.000213,0.009525,-0.009599,0.01823,-0.031544,0.014775,0.001624,-0.001579,-0.003625,0.000688,-0.009114,0.006568,-0.00323,0.009297,-0.005946,0.00457,0.000893,-0.000694,0.001071,-0.000287,0.000497
Sub_Saharan_African:Western_African:2,-0.6300625,0.0625011,0.022113,0.0167079,0.0005035,0 .0124741,-0.044417,0.0477673,-0.0488813,0.0327694,0.0046205,0.0007904,0.0230561, 0.0009509,0.0125232,-0.0096067,0.0070763,0.0004491,0.006022,-0.00299,0.0015542,0.0023156,-0.0017592,-0.0004711,-0.0004246
Sub_Saharan_African:Western_African_Hunter-Gatherer,-0.6069618,0.0545845,0.0136708,0.0278588,-0.0026928,0.0006272,0.1370698,-0.1067262,0.0100218,-0.0019588,-0.0007715,-0.0317718,-0.0225592,-0.0023052,0.00302,-0.0038452,0.0092245,0.0172612,-0.0046192,-0.0013757,-0.0025582,-0.002442,6.18e-05,-0.0001508,-0.002874