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View Full Version : K13 Regional Closest Genetic Distance chromosomes (2)



ScandinavianCelt
09-28-2024, 03:25 PM
Looks like I'm a Balkan Slav, folks. For me my closest two Chromosomes shown below are #9 and #13: results with K13 Regional G25 as SOURCE are shown below USING K13 G25 individual chromosomes as TARGET.

DON'T USE OFFICIAL/STANDARD G25-- MUST USE YOUR K13 G25 22-CHROMOSOMES!

Show two strings of results:

1. Your NO ADC to 2x ADC for the chromosome you have the closest distance results to at NO ADC (instructions below)
2. Your NO ADC to 2x ADC for the chromosome you have the closest distance results to at 2x ADC (instructions below)

Needed for this calc:

1. TARGET: K13 22-chromosomes simulated into G25 (make them with Gedmatch, the horizontal making link, then Allelocator tool to convert them to G25)
2. SOURCE: K13 Regional simulated G25 (from raw)-- samples in link below

Directions:

1. Run the calc on MULTI tab on Vahaduo with your K13 22-chromosomes G25 as TARGET
2. Click "distance" once to get your top distance/fit chromosome put on top
3. To post results easily, go back to "Single" calculation and run it at NO ADC

My EXAMPLE result for closest distance chromosome at NO ADC:(unexpected results in BOLD)

I'm guessing this means my other genetics are more ancient for me?

Target: chr9
Distance: 0.0059% / 0.00585372
28.7 Irish_Connacht
15.9 Turkish_Meskheti
15.8 French_Brittany
11.3 Turkish_East-Black_Sea
10.0 German_Mecklenburg_Center/East
8.8 German_East_Prussia_Memelland
4.1 Roma_Balkans
3.6 Bosniak_Central
1.8 Basque_France

Target: chr9
Distance: 0.0067% / 0.00665127 | ADC: 0.25x RC
46.4 German_Bavaria_Oberpfalz
27.2 Irish_Connacht
22.7 Turkish_Meskheti
3.7 Roma_Balkans

Target: chr9
Distance: 0.0109% / 0.01094435 | ADC: 0.5x RC
58.5 German_North_Rhine
20.4 Romanian_Ukraine
15.6 Turkish_Meskheti
5.5 Roma_Balkans

Target: chr9
Distance: 0.0273% / 0.02732067 | ADC: 1x RC
54.0 Romanian_Banat
35.4 Austrian_Tyrol
10.6 Bosniak_Sandzak_West

Target: chr9
Distance: 0.0286% / 0.02856173 | ADC: 2x RC
51.8 Romanian_Banat
48.2 Bosniak_Sandzak_West



Now, go back and do it on the MULTI tab for your closest chromosome at 2x and show that spread NO ADC to 2x:

My closest at 2x shows this chromosome, also a southern one for me, #13: (unexpected results in BOLD)

Target: chr13
Distance: 0.0200% / 0.01999029 | ADC: 2x RC
100.0 Serb_CentralSerbia

Target: chr13
Distance: 0.0174% / 0.01735794 | ADC: 1x RC
48.3 Serb_Herzegovina
41.4 Austrian_Burgenland
10.3 Serb_CentralSerbia

Target: chr13
Distance: 0.0153% / 0.01529391 | ADC: 0.5x RC
52.0 Serb_Herzegovina
34.4 German_Thuringia_Central
13.6 Swiss_Italian

Target: chr13
Distance: 0.0145% / 0.01445588 | ADC: 0.25x RC
38.1 Serb_Herzegovina
22.4 Bosniak_Southeast
21.0 Swiss_Italian
18.5 German_East_Prussia_Central

Target: chr13
Distance: 0.0117% / 0.01173325
31.8 German_East_Prussia_Central
29.2 Polish_Podlaskie
22.8 Jew_Italy
12.6 Sardinian
3.6 Latvian



Link to K13 Regional samples converted to G25:

<iframe src="https://pastebin.com/embed_iframe/5rhW6Mwk" style="border:none;width:50%"></iframe>

Have fun!

Post results please, especially if unexpected. Dusan, are you my cousin?

Note: You can use the raw format K13 if using your raw data K13 also, but distances are so bonkers with raw that it may not be as good, but you can try those also-- I will check if it yields the same two chromosomes with the raw data and let you know)

https://i.postimg.cc/qB3Ys3NT/Vahaduo-Global-25-Views-2024-09-28-T115720-683.png (https://postimages.org/)

ScandinavianCelt
09-28-2024, 04:06 PM
copy (CTRL+A) your full 22-chromosome results on Gedmatch K13 calc (select option on Gedmatch to see your chromosome results individually) to this box (copy the following to URL, if not linked):

data:text/html;base64,PHRleHRhcmVhPjwvdGV4dGFyZWE+CjxzY3JpcH Q+ZG9jdW1lbnQucXVlcnlTZWxlY3RvcigidGV4dGFyZWEiKS5v bmlucHV0PWZ1bmN0aW9uKCl7Y29uc3QgdD1bLi4udGhpcy52YW x1ZS5tYXRjaCgvKD88PVxzKVwtfFtcZFwuXSsoPz0lXHMpL2dt KV0ubWFwKE51bWJlcikubWFwKCh0PT5pc05hTih0KT8wOnQpKS 5yZWR1Y2UoKCh0LGEsZSk9Pntjb25zdCBuPU1hdGguZmxvb3Io ZS8yMik7cmV0dXJuIHRbbl18fD1bXSx0W25dLnB1c2goYSksdH 0pLFtdKTt0aGlzLnZhbHVlPXRbMF0ubWFwKCgoYSxlKT0+dC5t YXAoKHQ9PnRbZV0pKSkpLm1hcCgoKHQsYSk9PmBjaHIke2ErMX 0sJHt0LmpvaW4oIiwiKX1gKSkuam9pbigiXG4iKX08L3Njcmlw dD4=

then copy that result to Allelocator here: https://allelocator.ovh/simulatedg25.html

Click K13 tab/button to get results of 22-chromosomes in G25 format below; save them to use later

Solitude
09-28-2024, 04:33 PM
my chromosomes have already been mapped but was with old raw data

https://i.postimg.cc/fLXBnBFn/K36-Heatmap-3.png

i got this results here with K36 , here results on pastebin but with new raw data from ancestrydna

<iframe src="https://pastebin.com/embed_iframe/3jxxUPbg" style="border:none;width:50%"></iframe>

ScandinavianCelt
09-28-2024, 04:54 PM
my chromosomes have already been mapped but was with old raw data

https://i.postimg.cc/fLXBnBFn/K36-Heatmap-3.png

i got this results here with K36 , here results on pastebin but with new raw data from ancestrydna

<iframe src="https://pastebin.com/embed_iframe/3jxxUPbg" style="border:none;width:50%"></iframe>

This is for Regional w/K13. Once you get data in MULTI tab....

https://i.postimg.cc/JzRPF1L6/chr9-closest-sniph.jpg (https://postimg.cc/6y1r2xTn)

Athalafuns
09-28-2024, 05:44 PM
This is my top fit chromosome, both in NO ADC and 2X when comparing on the Multi tab.

Target: chr1
Distance: 0.3833% / 0.00383322
53.0 Basque_France
16.6 German_Rhineland-Palatinate_East_of_Rhine
15.6 Sardinian
9.8 Italian_Aosta_Valley
3.4 German_East_Prussia_Memelland
1.6 German_Bavarian_Swabia

Target: chr1
Distance: 0.5773% / 0.00577341 | ADC: 0.25x RC
71.8 French_Aquitaine
11.2 German_Bavarian_Swabia
11.2 Italian_Aosta_Valley
5.8 Sardinian

Target: chr1
Distance: 0.6758% / 0.00675761 | ADC: 0.5x RC
72.0 French_Aquitaine
24.0 Italian_Aosta_Valley
4.0 Spanish_Cantabria

Target: chr1
Distance: 0.8267% / 0.00826747 | ADC: 1x RC
60.6 French_Aquitaine
27.0 French_South
12.4 Spanish_Cantabria

Target: chr1
Distance: 1.2711% / 0.01271053 | ADC: 2x RC
100.0 French_Aquitaine


Distance to: chr1
0.01271053 French_Aquitaine
0.01723024 Spanish_Cantabria
0.01790263 Spanish_Aragon
0.01882335 French_South
0.02228378 Spanish_Catalonia
0.02244302 Basque_France
0.02279078 Spanish_Valencia
0.02453379 Spanish_Castilla-La_Mancha
0.03093049 Spanish_Castile-León
0.03162562 Spanish_Andalusia
0.03165679 Italian_Aosta_Valley
0.03325864 Spanish_Galicia
0.03372011 Swiss_Italian
0.03459332 Spanish_Murcia
0.03469892 French_Central
0.03648280 Spanish_Extremadura
0.03666573 Portuguese
0.03680983 Italian_Trentino
0.03994743 Italian_Piedmont
0.04039334 French_Provence_outlier
0.04139831 German_Saarland
0.04184024 Italian_Lombardy
0.04219690 Italian_Veneto
0.04371492 Swiss_French
0.04492601 German_Rhineland-Palatinate