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View Full Version : If there are studies with data that hasn't been converted to G25 provide them here


Peterski
01-15-2025, 10:06 PM
As much as my free time permits, I will try to convert BAM and FASTQ files into plink format and send them to Davidski.

Just post the links to studies, or even better directly to the data (download links to BAM or FASTQ files of the samples).
Beowulf
01-15-2025, 10:15 PM
Necrópolis Blanes 4,409 U6a1a1 North Africa n/a (female)
I23770.AG 400-500 CE 1500 Roman-Suevian_South_Merida_Blanes_oAfrican Mérida, Necrópolis Blanes 15,59 U6a8 North Africa E1b1b
I36196.TW 300-400 CE 1600 Roman_South_Cordoba_Lucena Cordoba, Lucena Basilica 145,715 U6c2 North Africa J2a1a1a2b2a1a1~
I36195.TW 300-400 CE 1600 Roman_South_Cordoba_Lucena Cordoba, Lucena Basilica 2,227 U8b1a Neolithic Central Europe, Near Eastern-Ancient Egypt, Caucasus J2a1a
I28359.AG 550-650 CE 1350 Roman-Visigoth_North_Tarragona_Vilardida Tarragona, Vilardida 44,36 U8b1b Early Neolithic Central Europe, Italy Q2a1
I20395.AG 400-700 CE 1400 Visigoth_North_Girona_Pla_lc_rel Girona, Pla de l'Horta 5,35 V23 Italy, southern britons n/a (female)
I19895.TW 500-700 CE 1350 Visigoth_South_Madrid_Boadilla Madrid, Boadilla 17,3 V26 Central-North Europe n/a (female)
I29543.TW 200 BCE - 500 CE 1800 Roman_North_Tarragona_Castellets Tarragona, La Canonja, Villa Romana dels Castellets 5,541 V7 Central-North Europe R1b1a1b1a1a2a1b1a1a~
I20385.AG 605-772 cal CE (1370±30 BPWink 1288 Visigoth_North_Girona_Pla Girona, Pla de l'Horta 63,43 W1+119 Neolithic France, Central-North europe, British Isles J1a2a1a2d2b~
I35945.TW 300-400 CE 1600 Roman_South_Cordoba_Lucena Cordoba, Lucena Basilica 52,958 W5 Neolithic Central Europe ..
I23755.AG 259-415 calCE (1695±20 BP, PSUAMS-10254) 1590 Roman_South_Merida_Blanes Mérida, Necrópolis Blanes 4,764 X2c2 Calcholithic North Iberia, South France, Italy n/a (female)


This was from a study made last year related with the Visigothic era in Spain, I tried to find it's name but I couldn't get it :(
Peterski
01-16-2025, 06:53 AM
^^^
It is "Disparate demographic impacts of the Roman Colonization and the Migration Period in the Iberian Peninsula".

I think the data from this study is not yet available because it is still a preprint.
Beowulf
01-16-2025, 12:24 PM
^^^
It is "Disparate demographic impacts of the Roman Colonization and the Migration Period in the Iberian Peninsula".

I think the data from this study is not yet available because it is still a preprint.

Ahhh okay that makes lots of sense!

Thank you anyways! :o hopefully we'll get their coordinates one day
Peterski
01-17-2025, 07:57 PM
Is this one already available in G25? - https://www.ebi.ac.uk/ena/browser/view/PRJEB81465

Edit:

Okay, it was converted already:


Scaled

Durotrigian:LTH01,0.137726,0.132019,0.066373,0.038 76,0.041854,0.018128,-0.000235,-0.004384,0.00409,0.014397,-0.012991,0.008243,-0.014717,-0.007156,0.017644,0.011668,-0.007953,-0.004181,0.002263,-0.001751,0.004866,0.005935,-0.006286,0.001807,0
Durotrigian:MDN01,0.127482,0.126941,0.059208,0.046 835,0.03693,0.011435,0.00188,0.007846,0.007567,0.0 0328,-0.01429,0.002098,-0.016353,-0.017616,0.022122,0.013657,-0.001043,0.000633,0.007668,0.006253,-0.001622,0.006677,-0.005546,0.001084,-0.007903
Durotrigian:WBK01,0.127482,0.136081,0.067882,0.046 512,0.0397,0.019243,-0.000235,0.006461,0.009408,0.001093,-0.001299,0.002398,-0.014717,-0.023671,0.021987,0.013126,-0.009388,0.00228,-0.001131,0.006003,0.012603,-0.006183,0.003328,0.01217,0.001197
Durotrigian:WBK02,0.135449,0.147252,0.058077,0.028 101,0.050779,0.01004,-0.002115,-0.003231,0.02127,0.024784,-0.010555,0.014987,-0.015609,-0.016652,0.007465,0.005171,-0.000522,0.002914,0.003268,-0.002376,0.002246,0.006677,0.001602,0.000723,-0.001557
Durotrigian:WBK03,0.12862,0.144205,0.056945,0.0471 58,0.041238,0.011156,0.00141,0.002077,0.001023,0.0 15308,-0.008119,0.003597,-0.019921,-0.010459,0.017236,0.001193,-0.007693,-0.003167,0.004274,-0.002751,0.00549,-0.000989,0.000493,0.003374,-0.002515
Durotrigian:WBK04,0.124067,0.133034,0.056191,0.044 897,0.02462,0.016455,0.004935,0.003231,0.006749,0. 007836,0.004222,0.005095,-0.013231,-0.016377,0.016151,0.016176,0.008475,-0.002787,-0.008799,0.001251,-0.000499,0.004946,-0.003574,0.008435,0.017962
Durotrigian:WBK05,0.124067,0.14319,0.05506,0.04295 9,0.042469,0.018686,0,-0.000692,0.012067,0.004556,-0.005846,0.008992,-0.013825,-0.009358,0.019679,0.009149,-0.001434,0.000127,0.003394,0.003126,0.014474,0.004 699,-0.002711,0.006266,0.001796
Durotrigian:WBK06,0.122929,0.132019,0.04978,0.0426 36,0.040931,0.01757,-0.00094,0.004846,0.008385,0.005285,-0.003085,0.015286,-0.015163,-0.013762,0.02253,0.016706,-0.003912,0.006334,0.006913,0.001376,0.005989,-0.000371,-0.001479,0.007471,0.003473
Durotrigian:WBK07,0.136588,0.14319,0.060339,0.0542 64,0.039392,0.014781,0.00235,0.004154,0.005113,0.0 07836,-0.002761,0.005545,-0.010258,-0.014863,0.020494,0.010209,-0.0103,0.005828,-0.002388,0.00025,0.00262,0.00643,0.002835,0.007591 ,0.000479
Durotrigian:WBK08,0.135449,0.13405,0.060716,0.0339 15,0.041546,0.016455,0.004935,0.001615,0.004704,0. 017495,-0.004222,0.001049,-0.011447,-0.013487,0.010722,-0.003845,-0.016428,0.007981,0.004651,-0.003252,-0.000499,0.004699,0.000739,0.004097,0.00012
Durotrigian:WBK09,0.127482,0.126941,0.060716,0.049 742,0.040007,0.024821,0.009635,-0.000692,0.001227,-0.004738,-0.00747,0.004496,-0.012933,-0.023671,0.021037,0.006629,-0.00013,-0.001774,0.00176,0.005753,0.008859,0.003215,0.0017 25,0.006748,-0.003113
Durotrigian:WBK10,0.124067,0.14319,0.060716,0.0394 06,0.053241,0.020917,0.00235,-0.003,0.016157,0.027882,-0.007145,0.004196,-0.019772,-0.033029,0.013843,0.019623,0.012908,0.004181,-0.004399,0.000875,-0.002995,-0.004328,0.003328,0.001687,-0.005987
Durotrigian:WBK11,0.126344,0.137096,0.060339,0.039 406,0.047086,0.016455,0.00235,0.004846,0.011862,0. 021322,-0.00341,0.007493,-0.015461,-0.013762,0.011265,0.007955,0.007562,0.006461,0.004 148,0.009379,0.005865,0.004328,0.001109,0.01217,0
Durotrigian:WBK12,0.126344,0.128972,0.058077,0.045 543,0.043085,0.013108,-0.00423,0.00923,0.010226,0.011845,-0.010393,0.010641,-0.016799,-0.019267,0.013843,0.014452,-0.005867,0.004814,-0.001508,0.010005,0.009608,-0.000618,0,0.004458,-0.000239
Durotrigian:WBK13,0.129758,0.138112,0.05506,0.0419 9,0.0397,0.007251,-0.001645,0.005077,0.005727,0.012939,-0.006658,0.012289,-0.016353,-0.010735,0.018051,-0.001989,0.00013,0.005194,0.001383,-0.001,0.008235,0.000989,0.001479,0.008676,-0.002994
Durotrigian:WBK14,0.129758,0.13405,0.056191,0.0581 4,0.038469,0.009761,0.006345,0.010615,0.00409,-0.00164,-0.010718,0.009442,-0.017393,-0.021332,0.026465,0.02148,0.009518,0.001647,0.0002 51,0.006128,0.001622,-0.000742,0.007641,0.019159,0.000359
Durotrigian:WBK15,0.135449,0.13405,0.064111,0.0448 97,0.047086,0.01255,0.00282,0.006692,0.011658,0.00 3645,-0.006658,0.007493,-0.019475,-0.012111,0.019137,0.007425,-0.003129,-0.002787,0.008925,0.006628,0.008859,0.000495,-0.003081,0.004579,0.005029
Durotrigian:WBK16,0.12862,0.144205,0.059208,0.0526 49,0.04924,0.01757,0.00517,0.006231,0.016362,0.017 859,0.004709,0.007793,-0.019772,-0.013212,0.009636,0.007027,0.001434,-0.00038,0.00817,0.009254,0.009358,0.006801,-0.002835,0.003253,0.001796
Durotrigian:WBK17,0.12862,0.141159,0.057322,0.0542 64,0.045855,0.017012,0.00094,0.008077,0.001432,0.0 01276,-0.00406,0.013788,-0.020069,-0.01156,0.025244,0.004375,-0.002738,0.003421,-0.005656,0.008504,0.001497,0.002102,0.002095,0.005 181,-0.002874
Durotrigian:WBK18,0.132035,0.126941,0.060339,0.048 127,0.043393,0.01255,0.00047,0.004846,0.007567,0.0 07472,-0.01153,0.012289,-0.017839,-0.021744,0.021037,0.02559,0.005215,0.001647,-0.002891,0.001751,0.01123,-0.003091,0.001356,0.016749,0.000239
Durotrigian:WBK19,0.135449,0.139128,0.059962,0.038 437,0.047701,0.017291,0.00705,0.002308,0.013908,0. 009659,-0.002111,0.005095,-0.018731,-0.007569,0.014251,0.000398,-0.004563,0.000633,0.004651,0.002251,0.005615,-0.000247,-0.006039,0.005663,0.006586
Durotrigian:WBK20,0.127482,0.137096,0.062979,0.044 897,0.043085,0.016176,0,-0.003923,0.012476,0.014761,-0.005034,0.005695,-0.012339,-0.011147,0.0095,0.000398,-0.002086,0.00114,-0.002388,0.006128,0.006364,-0.000618,-0.004067,-0.003735,0.005269
Durotrigian:WBK21,0.126344,0.137096,0.054305,0.043 282,0.029544,0.013945,0.004935,0.009692,0.012885,0 .010387,-0.00747,0.004946,-0.01219,0,0.018865,0.001989,-0.027772,0.00228,-0.005531,-0.002126,0.008235,0.002349,-0.008134,0.007832,0.000838
Durotrigian:WBK22,0.132035,0.132019,0.059585,0.042 959,0.0437,0.014781,0.00235,0.010153,0.011453,0.00 8565,-0.010555,0.003897,-0.010406,-0.012386,0.022394,0.019623,0.009779,-0.004814,0.003142,0.003627,0.010482,-0.004328,-0.007641,0.008435,-0.000718
Durotrigian:WBK23,0.126344,0.149283,0.056191,0.044 897,0.042777,0.015897,-0.0047,0.006923,0.012476,0.009659,-0.000812,0.004646,-0.010852,-0.014038,0.012215,0.006364,-0.00326,0.00076,0,0.006753,0.002246,0.000618,0.001 849,0.000241,-0.006227
Durotrigian:WBK24,0.118376,0.129988,0.062225,0.045 866,0.044931,0.018965,-0.001175,0.003923,0.003272,0.001822,-0.002436,0.01094,-0.022745,-0.007707,0.019408,-0.016176,-0.011865,0.0019,0.007542,0.001751,0.009234,-0.001484,0.001109,0.001807,-0.00479
Durotrigian:WBK25,0.127482,0.13405,0.057699,0.0471 58,0.044008,0.024542,-0.00235,0.013384,0.017589,0.012574,-0.009419,0.01169,-0.015461,-0.015138,0.023751,0.003182,-0.024251,0.004941,0.012318,-0.001251,0.001373,0.001113,-0.007641,0.011568,-0.003233
Durotrigian:WBK26,0.136588,0.137096,0.050911,0.043 928,0.043393,0.014781,-0.000705,0.005538,0.007158,0.000547,0.003085,0.005 395,-0.017691,-0.013212,0.021037,-0.004375,-0.021774,0.002154,0.00088,0.002251,0,0.002844,0.00 2835,0.002892,-0.000718
Durotrigian:WBK27,0.117238,0.141159,0.053928,0.049 742,0.061242,0.011713,0.003055,-0.009692,-0.000614,0.005832,0.010718,0.008093,-0.020961,-0.018029,0.016558,0.009812,0.017211,-0.003421,0.002137,0.01063,0.029074,0.01694,-0.002465,0.009519,0.001437
Durotrigian:WBK29,0.122929,0.129988,0.053551,0.045 22,0.045547,0.012829,0.004465,0.001846,0.007976,0. 01385,-0.001624,0.006894,-0.011893,-0.018304,0.019137,0.019225,0.008605,-0.004307,-0.002137,0.011255,0.007487,-0.002473,-0.005546,0.012411,-0.003712
Durotrigian:WBK30,0.126344,0.138112,0.072784,0.049 742,0.050163,0.020917,0.005875,-0.000231,0.010022,0.006925,0.005684,0.000599,-0.012636,-0.009083,0.015608,-0.011933,-0.027381,0.000507,0.003645,0.001376,0.013975,-0.000371,-0.007148,0.001325,0.011017
Durotrigian:WBK31,0.132035,0.129988,0.061094,0.047 481,0.039084,0.023985,0.001175,0.002538,0.004909,0 .007654,-0.003735,0.001049,-0.018583,-0.018166,0.02348,0.013657,0.00691,-0.000887,-0.003645,0.012131,0.009358,0.002226,-0.000123,0.008796,0.000599
Durotrigian:WBK32,0.132035,0.128972,0.058077,0.020 672,0.047393,-0.00251,0.00329,-0.004846,0.020248,0.00492,-0.008607,0.01079,-0.007433,-0.016377,0.006107,0.016971,0.006519,0.000127,-0.006536,0.004002,-0.012977,-0.00915,-0.00912,0.008194,0.005748
Durotrigian:WBK33,0.127482,0.13405,0.055437,0.0406 98,0.042162,0.016455,0.00188,0.003923,0.006545,0.0 06196,-0.002761,0.015436,-0.013528,-0.015827,0.013301,0.005304,-0.009518,-0.000887,-0.004399,0.005253,0.013102,0.012365,-0.005423,0.007712,-0.000718
Durotrigian:WBK34,0.129758,0.140143,0.052797,0.043 605,0.038776,0.013666,0.010105,0.005307,0.002659,0 .01057,-0.012666,0.004796,-0.016055,-0.021607,0.013572,0.023999,0.00678,-0.002154,0.001006,0.006628,0.004866,-0.00136,-0.000863,0.00735,-0.001317
Durotrigian:WBK35,0.111547,0.12491,0.069013,0.0387 6,0.040007,0.015618,-0.019036,0.001385,0.018816,0.002734,-0.000162,0.003747,-0.018137,-0.016102,0.017372,0.036064,0.004042,0.002027,0.004 651,0.002626,0.002745,-0.003833,-0.004314,0.007109,0.002874
Durotrigian:WBK36,0.133173,0.140143,0.062225,0.049 742,0.037238,0.018407,0.00282,0.006461,0.006136,0. 009476,-0.001137,0.008692,-0.013974,-0.021056,0.016694,0.012861,-0.008475,-0.005321,0.002891,0.001251,0.005615,0.003215,-0.004807,0.00494,0.001078
Durotrigian:WBK39,0.122929,0.133034,0.056945,0.050 388,0.051086,0.02008,0,0.001846,0.003272,-0.007836,-0.007957,0.014987,-0.01665,-0.020643,0.019001,0.008486,-0.01682,-0.009122,-0.008547,0.007003,-0.002246,0.005688,-0.003081,0.006145,0.000359
Durotrigian:WBK40,0.125205,0.141159,0.062979,0.046 512,0.042469,0.020359,0.00517,0.01523,0.007976,0.0 10752,-0.002436,0.006145,-0.013231,-0.01968,0.022394,0.016839,0.0103,0.003674,-0.003394,0.008379,0.009234,0.008779,0.001232,-0.002289,0.001676
Durotrigian:WBK41,0.126344,0.14319,0.058831,0.0384 37,0.033237,0.011435,-0.000705,0.000231,0.01718,0.014397,-0.00682,0.015137,-0.015461,-0.012248,0.021037,-0.00411,-0.016168,0.010769,0.004902,-0.002126,0.000374,-0.001978,-0.003574,-0.001446,0.001796
Durotrigian:WBK42,0.136588,0.137096,0.058831,0.048 45,0.036622,0.020917,0.00282,0.004384,0.014521,0.0 12574,-0.000812,0.009442,-0.022894,-0.017065,0.024158,0.012596,-0.001956,0.003927,0.001885,0.000625,0.007362,0.006 554,0.006902,0.006386,0.005987
Durotrigian:WBK43,0.130897,0.13405,0.066373,0.0394 06,0.034776,0.017849,0.003525,0.005307,0.006545,0. 010752,-0.003248,0.008542,-0.013825,-0.023396,0.021172,0.013922,0.002868,0.006841,-0.003017,0.012006,0.012852,-0.005935,0.002342,0.011568,0.002275
Durotrigian:WBK101,0.129758,0.136081,0.069767,0.05 0388,0.041546,0.020359,0,0.000462,0.007363,0.00856 5,-0.009743,0.006444,-0.013082,-0.022295,0.020494,0.009812,-0.006389,-0.002407,0.003268,0.008129,0.008984,0.000371,-0.011585,0.009881,-0.006347
Durotrigian:WBK103,0.127482,0.140143,0.072784,0.04 7481,0.038161,0.02008,0.00752,0.001385,0.005931,0. 014214,-0.008769,0.003147,-0.014717,-0.012661,0.022394,0.011933,-0.00665,0.001774,0.003017,0.005253,0.005865,0.0059 35,-0.004807,0.008796,0.003113
Durotrigian:WBK105,0.134311,0.147252,0.055437,0.04 2636,0.045239,0.01506,-0.002115,0.006231,0.00634,0.009112,-0.003735,0.01124,-0.015015,-0.025185,0.018865,0.013789,0.010561,-0.006714,-0.00176,0.005253,0.003494,0.005317,-0.001602,0.000964,-0.005868
Durotrigian:WBK106,0.118376,0.13405,0.050534,0.044 251,0.038776,0.011156,-0.008695,-0.005538,0.005113,0.000547,0.003085,0.013038,-0.014271,-0.01913,0.020222,0.003845,-0.01682,-0.002534,0.008422,0.01063,0.008485,0.001978,-0.008258,0.005422,-0.004311
Durotrigian:WBK107,0.113823,0.139128,0.06939,0.051 357,0.038469,0.034025,0.019506,0.002769,-0.003886,-0.00328,-0.00065,-0.002248,-0.018434,-0.006331,0.00475,-0.007425,-0.006389,0.005068,0.003394,0.004877,0.003868,0.006 059,-0.010476,-0.004217,0.005628
Durotrigian:WBK108,0.119514,0.129988,0.04978,0.044 897,0.040007,0.015339,0.001175,0.002077,0.003068,0 .007836,-0.016888,0.006594,-0.014569,-0.019955,0.022937,0.018828,0.004172,0.012922,0.004 274,0.003001,-0.000873,-0.002226,-0.008258,0.015183,0.002275
Durotrigian:WBK191,0.133173,0.14319,0.067127,0.047 481,0.036007,0.016733,-0.000235,0.014307,0.002863,-0.009476,-0.008444,0.009292,-0.019029,-0.012386,0.019137,-0.000796,-0.024512,-0.004814,0.001257,0.006503,0.016097,0.009892,-0.000616,0.014942,-0.003473
Durotrigian:WBK192,0.125205,0.147252,0.061094,0.04 3928,0.026774,0.009482,0.001175,0.022614,0.00634,0 .007836,-0.010718,0.003147,-0.030178,-0.011973,0.015879,-0.001591,-0.005737,-0.004687,-0.006662,0.010005,0.009982,0.004699,-0.002711,0.003012,0.007305
Durotrigian:WBK195,0.136588,0.13405,0.05242,0.0352 07,0.05201,0.017012,0.000705,0.009692,0.016975,0.0 14761,-0.005521,0.009891,-0.012339,-0.007982,0.012622,0.014054,0.013169,0.000127,-0.006788,0.013882,0.002745,-0.001731,-0.003697,0.013978,-0.010059
Durotrigian:WBK196,0.126344,0.13405,0.059585,0.040 375,0.039084,0.031794,-0.00376,-0.000923,0.015135,0.012757,-0.010393,0.009442,-0.020961,-0.020643,0.015879,0.012198,0.017211,0.000633,-0.001006,-0.001126,0.001872,0.007543,-0.012571,0.018677,0.010658

Raw

Durotrigian:LTH01,0.0121,0.013,0.0176,0.012,0.0136 ,0.0065,-0.0001,-0.0019,0.002,0.0079,-0.008,0.0055,-0.0099,-0.0052,0.013,0.0088,-0.0061,-0.0033,0.0018,-0.0014,0.0039,0.0048,-0.0051,0.0015,0
Durotrigian:MDN01,0.0112,0.0125,0.0157,0.0145,0.01 2,0.0041,0.0008,0.0034,0.0037,0.0018,-0.0088,0.0014,-0.011,-0.0128,0.0163,0.0103,-0.0008,0.0005,0.0061,0.005,-0.0013,0.0054,-0.0045,0.0009,-0.0066
Durotrigian:WBK01,0.0112,0.0134,0.018,0.0144,0.012 9,0.0069,-0.0001,0.0028,0.0046,0.0006,-0.0008,0.0016,-0.0099,-0.0172,0.0162,0.0099,-0.0072,0.0018,-0.0009,0.0048,0.0101,-0.005,0.0027,0.0101,0.001
Durotrigian:WBK02,0.0119,0.0145,0.0154,0.0087,0.01 65,0.0036,-0.0009,-0.0014,0.0104,0.0136,-0.0065,0.01,-0.0105,-0.0121,0.0055,0.0039,-0.0004,0.0023,0.0026,-0.0019,0.0018,0.0054,0.0013,0.0006,-0.0013
Durotrigian:WBK03,0.0113,0.0142,0.0151,0.0146,0.01 34,0.004,0.0006,0.0009,0.0005,0.0084,-0.005,0.0024,-0.0134,-0.0076,0.0127,0.0009,-0.0059,-0.0025,0.0034,-0.0022,0.0044,-0.0008,0.0004,0.0028,-0.0021
Durotrigian:WBK04,0.0109,0.0131,0.0149,0.0139,0.00 8,0.0059,0.0021,0.0014,0.0033,0.0043,0.0026,0.0034 ,-0.0089,-0.0119,0.0119,0.0122,0.0065,-0.0022,-0.007,0.001,-0.0004,0.004,-0.0029,0.007,0.015
Durotrigian:WBK05,0.0109,0.0141,0.0146,0.0133,0.01 38,0.0067,0,-0.0003,0.0059,0.0025,-0.0036,0.006,-0.0093,-0.0068,0.0145,0.0069,-0.0011,0.0001,0.0027,0.0025,0.0116,0.0038,-0.0022,0.0052,0.0015
Durotrigian:WBK06,0.0108,0.013,0.0132,0.0132,0.013 3,0.0063,-0.0004,0.0021,0.0041,0.0029,-0.0019,0.0102,-0.0102,-0.01,0.0166,0.0126,-0.003,0.005,0.0055,0.0011,0.0048,-0.0003,-0.0012,0.0062,0.0029
Durotrigian:WBK07,0.012,0.0141,0.016,0.0168,0.0128 ,0.0053,0.001,0.0018,0.0025,0.0043,-0.0017,0.0037,-0.0069,-0.0108,0.0151,0.0077,-0.0079,0.0046,-0.0019,0.0002,0.0021,0.0052,0.0023,0.0063,0.0004
Durotrigian:WBK08,0.0119,0.0132,0.0161,0.0105,0.01 35,0.0059,0.0021,0.0007,0.0023,0.0096,-0.0026,0.0007,-0.0077,-0.0098,0.0079,-0.0029,-0.0126,0.0063,0.0037,-0.0026,-0.0004,0.0038,0.0006,0.0034,0.0001
Durotrigian:WBK09,0.0112,0.0125,0.0161,0.0154,0.01 3,0.0089,0.0041,-0.0003,0.0006,-0.0026,-0.0046,0.003,-0.0087,-0.0172,0.0155,0.005,-0.0001,-0.0014,0.0014,0.0046,0.0071,0.0026,0.0014,0.0056,-0.0026
Durotrigian:WBK10,0.0109,0.0141,0.0161,0.0122,0.01 73,0.0075,0.001,-0.0013,0.0079,0.0153,-0.0044,0.0028,-0.0133,-0.024,0.0102,0.0148,0.0099,0.0033,-0.0035,0.0007,-0.0024,-0.0035,0.0027,0.0014,-0.005
Durotrigian:WBK11,0.0111,0.0135,0.016,0.0122,0.015 3,0.0059,0.001,0.0021,0.0058,0.0117,-0.0021,0.005,-0.0104,-0.01,0.0083,0.006,0.0058,0.0051,0.0033,0.0075,0.00 47,0.0035,0.0009,0.0101,0
Durotrigian:WBK12,0.0111,0.0127,0.0154,0.0141,0.01 4,0.0047,-0.0018,0.004,0.005,0.0065,-0.0064,0.0071,-0.0113,-0.014,0.0102,0.0109,-0.0045,0.0038,-0.0012,0.008,0.0077,-0.0005,0,0.0037,-0.0002
Durotrigian:WBK13,0.0114,0.0136,0.0146,0.013,0.012 9,0.0026,-0.0007,0.0022,0.0028,0.0071,-0.0041,0.0082,-0.011,-0.0078,0.0133,-0.0015,0.0001,0.0041,0.0011,-0.0008,0.0066,0.0008,0.0012,0.0072,-0.0025
Durotrigian:WBK14,0.0114,0.0132,0.0149,0.018,0.012 5,0.0035,0.0027,0.0046,0.002,-0.0009,-0.0066,0.0063,-0.0117,-0.0155,0.0195,0.0162,0.0073,0.0013,0.0002,0.0049,0 .0013,-0.0006,0.0062,0.0159,0.0003
Durotrigian:WBK15,0.0119,0.0132,0.017,0.0139,0.015 3,0.0045,0.0012,0.0029,0.0057,0.002,-0.0041,0.005,-0.0131,-0.0088,0.0141,0.0056,-0.0024,-0.0022,0.0071,0.0053,0.0071,0.0004,-0.0025,0.0038,0.0042
Durotrigian:WBK16,0.0113,0.0142,0.0157,0.0163,0.01 6,0.0063,0.0022,0.0027,0.008,0.0098,0.0029,0.0052,-0.0133,-0.0096,0.0071,0.0053,0.0011,-0.0003,0.0065,0.0074,0.0075,0.0055,-0.0023,0.0027,0.0015
Durotrigian:WBK17,0.0113,0.0139,0.0152,0.0168,0.01 49,0.0061,0.0004,0.0035,0.0007,0.0007,-0.0025,0.0092,-0.0135,-0.0084,0.0186,0.0033,-0.0021,0.0027,-0.0045,0.0068,0.0012,0.0017,0.0017,0.0043,-0.0024
Durotrigian:WBK18,0.0116,0.0125,0.016,0.0149,0.014 1,0.0045,0.0002,0.0021,0.0037,0.0041,-0.0071,0.0082,-0.012,-0.0158,0.0155,0.0193,0.004,0.0013,-0.0023,0.0014,0.009,-0.0025,0.0011,0.0139,0.0002
Durotrigian:WBK19,0.0119,0.0137,0.0159,0.0119,0.01 55,0.0062,0.003,0.001,0.0068,0.0053,-0.0013,0.0034,-0.0126,-0.0055,0.0105,0.0003,-0.0035,0.0005,0.0037,0.0018,0.0045,-0.0002,-0.0049,0.0047,0.0055
Durotrigian:WBK20,0.0112,0.0135,0.0167,0.0139,0.01 4,0.0058,0,-0.0017,0.0061,0.0081,-0.0031,0.0038,-0.0083,-0.0081,0.007,0.0003,-0.0016,0.0009,-0.0019,0.0049,0.0051,-0.0005,-0.0033,-0.0031,0.0044
Durotrigian:WBK21,0.0111,0.0135,0.0144,0.0134,0.00 96,0.005,0.0021,0.0042,0.0063,0.0057,-0.0046,0.0033,-0.0082,0,0.0139,0.0015,-0.0213,0.0018,-0.0044,-0.0017,0.0066,0.0019,-0.0066,0.0065,0.0007
Durotrigian:WBK22,0.0116,0.013,0.0158,0.0133,0.014 2,0.0053,0.001,0.0044,0.0056,0.0047,-0.0065,0.0026,-0.007,-0.009,0.0165,0.0148,0.0075,-0.0038,0.0025,0.0029,0.0084,-0.0035,-0.0062,0.007,-0.0006
Durotrigian:WBK23,0.0111,0.0147,0.0149,0.0139,0.01 39,0.0057,-0.002,0.003,0.0061,0.0053,-0.0005,0.0031,-0.0073,-0.0102,0.009,0.0048,-0.0025,0.0006,0,0.0054,0.0018,0.0005,0.0015,0.0002 ,-0.0052
Durotrigian:WBK24,0.0104,0.0128,0.0165,0.0142,0.01 46,0.0068,-0.0005,0.0017,0.0016,0.001,-0.0015,0.0073,-0.0153,-0.0056,0.0143,-0.0122,-0.0091,0.0015,0.006,0.0014,0.0074,-0.0012,0.0009,0.0015,-0.004
Durotrigian:WBK25,0.0112,0.0132,0.0153,0.0146,0.01 43,0.0088,-0.001,0.0058,0.0086,0.0069,-0.0058,0.0078,-0.0104,-0.011,0.0175,0.0024,-0.0186,0.0039,0.0098,-0.001,0.0011,0.0009,-0.0062,0.0096,-0.0027
Durotrigian:WBK26,0.012,0.0135,0.0135,0.0136,0.014 1,0.0053,-0.0003,0.0024,0.0035,0.0003,0.0019,0.0036,-0.0119,-0.0096,0.0155,-0.0033,-0.0167,0.0017,0.0007,0.0018,0,0.0023,0.0023,0.0024 ,-0.0006
Durotrigian:WBK27,0.0103,0.0139,0.0143,0.0154,0.01 99,0.0042,0.0013,-0.0042,-0.0003,0.0032,0.0066,0.0054,-0.0141,-0.0131,0.0122,0.0074,0.0132,-0.0027,0.0017,0.0085,0.0233,0.0137,-0.002,0.0079,0.0012
Durotrigian:WBK29,0.0108,0.0128,0.0142,0.014,0.014 8,0.0046,0.0019,0.0008,0.0039,0.0076,-0.001,0.0046,-0.008,-0.0133,0.0141,0.0145,0.0066,-0.0034,-0.0017,0.009,0.006,-0.002,-0.0045,0.0103,-0.0031
Durotrigian:WBK30,0.0111,0.0136,0.0193,0.0154,0.01 63,0.0075,0.0025,-0.0001,0.0049,0.0038,0.0035,0.0004,-0.0085,-0.0066,0.0115,-0.009,-0.021,0.0004,0.0029,0.0011,0.0112,-0.0003,-0.0058,0.0011,0.0092
Durotrigian:WBK31,0.0116,0.0128,0.0162,0.0147,0.01 27,0.0086,0.0005,0.0011,0.0024,0.0042,-0.0023,0.0007,-0.0125,-0.0132,0.0173,0.0103,0.0053,-0.0007,-0.0029,0.0097,0.0075,0.0018,-0.0001,0.0073,0.0005
Durotrigian:WBK32,0.0116,0.0127,0.0154,0.0064,0.01 54,-0.0009,0.0014,-0.0021,0.0099,0.0027,-0.0053,0.0072,-0.005,-0.0119,0.0045,0.0128,0.005,0.0001,-0.0052,0.0032,-0.0104,-0.0074,-0.0074,0.0068,0.0048
Durotrigian:WBK33,0.0112,0.0132,0.0147,0.0126,0.01 37,0.0059,0.0008,0.0017,0.0032,0.0034,-0.0017,0.0103,-0.0091,-0.0115,0.0098,0.004,-0.0073,-0.0007,-0.0035,0.0042,0.0105,0.01,-0.0044,0.0064,-0.0006
Durotrigian:WBK34,0.0114,0.0138,0.014,0.0135,0.012 6,0.0049,0.0043,0.0023,0.0013,0.0058,-0.0078,0.0032,-0.0108,-0.0157,0.01,0.0181,0.0052,-0.0017,0.0008,0.0053,0.0039,-0.0011,-0.0007,0.0061,-0.0011
Durotrigian:WBK35,0.0098,0.0123,0.0183,0.012,0.013 ,0.0056,-0.0081,0.0006,0.0092,0.0015,-0.0001,0.0025,-0.0122,-0.0117,0.0128,0.0272,0.0031,0.0016,0.0037,0.0021,0 .0022,-0.0031,-0.0035,0.0059,0.0024
Durotrigian:WBK36,0.0117,0.0138,0.0165,0.0154,0.01 21,0.0066,0.0012,0.0028,0.003,0.0052,-0.0007,0.0058,-0.0094,-0.0153,0.0123,0.0097,-0.0065,-0.0042,0.0023,0.001,0.0045,0.0026,-0.0039,0.0041,0.0009
Durotrigian:WBK39,0.0108,0.0131,0.0151,0.0156,0.01 66,0.0072,0,0.0008,0.0016,-0.0043,-0.0049,0.01,-0.0112,-0.015,0.014,0.0064,-0.0129,-0.0072,-0.0068,0.0056,-0.0018,0.0046,-0.0025,0.0051,0.0003
Durotrigian:WBK40,0.011,0.0139,0.0167,0.0144,0.013 8,0.0073,0.0022,0.0066,0.0039,0.0059,-0.0015,0.0041,-0.0089,-0.0143,0.0165,0.0127,0.0079,0.0029,-0.0027,0.0067,0.0074,0.0071,0.001,-0.0019,0.0014
Durotrigian:WBK41,0.0111,0.0141,0.0156,0.0119,0.01 08,0.0041,-0.0003,0.0001,0.0084,0.0079,-0.0042,0.0101,-0.0104,-0.0089,0.0155,-0.0031,-0.0124,0.0085,0.0039,-0.0017,0.0003,-0.0016,-0.0029,-0.0012,0.0015
Durotrigian:WBK42,0.012,0.0135,0.0156,0.015,0.0119 ,0.0075,0.0012,0.0019,0.0071,0.0069,-0.0005,0.0063,-0.0154,-0.0124,0.0178,0.0095,-0.0015,0.0031,0.0015,0.0005,0.0059,0.0053,0.0056,0 .0053,0.005
Durotrigian:WBK43,0.0115,0.0132,0.0176,0.0122,0.01 13,0.0064,0.0015,0.0023,0.0032,0.0059,-0.002,0.0057,-0.0093,-0.017,0.0156,0.0105,0.0022,0.0054,-0.0024,0.0096,0.0103,-0.0048,0.0019,0.0096,0.0019
Durotrigian:WBK101,0.0114,0.0134,0.0185,0.0156,0.0 135,0.0073,0,0.0002,0.0036,0.0047,-0.006,0.0043,-0.0088,-0.0162,0.0151,0.0074,-0.0049,-0.0019,0.0026,0.0065,0.0072,0.0003,-0.0094,0.0082,-0.0053
Durotrigian:WBK103,0.0112,0.0138,0.0193,0.0147,0.0 124,0.0072,0.0032,0.0006,0.0029,0.0078,-0.0054,0.0021,-0.0099,-0.0092,0.0165,0.009,-0.0051,0.0014,0.0024,0.0042,0.0047,0.0048,-0.0039,0.0073,0.0026
Durotrigian:WBK105,0.0118,0.0145,0.0147,0.0132,0.0 147,0.0054,-0.0009,0.0027,0.0031,0.005,-0.0023,0.0075,-0.0101,-0.0183,0.0139,0.0104,0.0081,-0.0053,-0.0014,0.0042,0.0028,0.0043,-0.0013,0.0008,-0.0049
Durotrigian:WBK106,0.0104,0.0132,0.0134,0.0137,0.0 126,0.004,-0.0037,-0.0024,0.0025,0.0003,0.0019,0.0087,-0.0096,-0.0139,0.0149,0.0029,-0.0129,-0.002,0.0067,0.0085,0.0068,0.0016,-0.0067,0.0045,-0.0036
Durotrigian:WBK107,0.01,0.0137,0.0184,0.0159,0.012 5,0.0122,0.0083,0.0012,-0.0019,-0.0018,-0.0004,-0.0015,-0.0124,-0.0046,0.0035,-0.0056,-0.0049,0.004,0.0027,0.0039,0.0031,0.0049,-0.0085,-0.0035,0.0047
Durotrigian:WBK108,0.0105,0.0128,0.0132,0.0139,0.0 13,0.0055,0.0005,0.0009,0.0015,0.0043,-0.0104,0.0044,-0.0098,-0.0145,0.0169,0.0142,0.0032,0.0102,0.0034,0.0024,-0.0007,-0.0018,-0.0067,0.0126,0.0019
Durotrigian:WBK191,0.0117,0.0141,0.0178,0.0147,0.0 117,0.006,-0.0001,0.0062,0.0014,-0.0052,-0.0052,0.0062,-0.0128,-0.009,0.0141,-0.0006,-0.0188,-0.0038,0.001,0.0052,0.0129,0.008,-0.0005,0.0124,-0.0029
Durotrigian:WBK192,0.011,0.0145,0.0162,0.0136,0.00 87,0.0034,0.0005,0.0098,0.0031,0.0043,-0.0066,0.0021,-0.0203,-0.0087,0.0117,-0.0012,-0.0044,-0.0037,-0.0053,0.008,0.008,0.0038,-0.0022,0.0025,0.0061
Durotrigian:WBK195,0.012,0.0132,0.0139,0.0109,0.01 69,0.0061,0.0003,0.0042,0.0083,0.0081,-0.0034,0.0066,-0.0083,-0.0058,0.0093,0.0106,0.0101,0.0001,-0.0054,0.0111,0.0022,-0.0014,-0.003,0.0116,-0.0084
Durotrigian:WBK196,0.0111,0.0132,0.0158,0.0125,0.0 127,0.0114,-0.0016,-0.0004,0.0074,0.007,-0.0064,0.0063,-0.0141,-0.015,0.0117,0.0092,0.0132,0.0005,-0.0008,-0.0009,0.0015,0.0061,-0.0102,0.0155,0.0089
Gannicus
04-05-2025, 12:58 AM
Morez, A. Reconstructing Past Human Genetic Variation with Ancient DNA: Case Studies from Ancient Egypt and Medieval Europe. 2023. Liverpool John Moores University, PhD dissertation. https://researchonline.ljmu.ac.uk/id/eprint/18979/

It was authored by A. Morez and completed as a doctoral thesis at Liverpool John Moores University in 2023. This research includes an analysis of the genome of an Old Kingdom Egyptian individual, designated as NUE001.

If anyone has the genome for NUE001 to download for qpAdm analysis let me know.

These apparently come from another study and G25 coordinates exist for these two. If anyone has the genomes for Egyptian Old Kingdom Period Gizeh:I6409 and Egyptian Old Middle Kingdom Period Dahshur:I10020 let me know also.
AnthrogenicaRefugee
11-03-2025, 11:23 AM
I10561 (male, ~30–40 years, tumulus 12, ~0.5× coverage). Published in Gnecchi-Ruscone et al. 2025 (Science Advances) supplementary table S11; also listed in Allen Ancient DNA Resource v54.1 (2025).
https://www.pnas.org/doi/10.1073/pnas.2418485122#supplementary-materials
J.S.
01-09-2026, 01:16 PM
Genomic study of plague victims in France in the 17th and 18th centuries

In this study, we conducted paleogenomic analysis on historical human skeletons excavated from archaeological contexts in France, specifically associated with the plague epidemics of the 17th and 18th centuries. These archaeological sites are linked to significant historical events, including the Thirty Years War in the 17th century and the devastating Marseille plague epidemic of 1720-1722. Our research focused on the sequencing of genomes extracted from individuals who succumbed to these epidemics, aiming to uncover insights into their genetic ancestry and explore potential genetic factors contributing to their susceptibility to the disease. Remarkably well-preserved petrous bones were the source of DNA for genome sequencing, enabling the characterization of nearly complete genetic profiles. In total, we successfully sequenced 79 human genomes, each with a depth-of-coverage comprised between 0.1-to-5.5-fold. These genomic data provided valuable insights into the genetic makeup of individuals who were most commonly affected during these historical plague outbreaks. Our findings shed light on the genetic aspects of historical plague victims, furthering our understanding of the impact of genetics on susceptibility to these devastating epidemics.

https://www.ebi.ac.uk/ena/browser/view/PRJEB65913.

Is there someone to take care of these files?
gixajo
01-09-2026, 02:20 PM
Genomic study of plague victims in France in the 17th and 18th centuries

In this study, we conducted paleogenomic analysis on historical human skeletons excavated from archaeological contexts in France, specifically associated with the plague epidemics of the 17th and 18th centuries. These archaeological sites are linked to significant historical events, including the Thirty Years War in the 17th century and the devastating Marseille plague epidemic of 1720-1722. Our research focused on the sequencing of genomes extracted from individuals who succumbed to these epidemics, aiming to uncover insights into their genetic ancestry and explore potential genetic factors contributing to their susceptibility to the disease. Remarkably well-preserved petrous bones were the source of DNA for genome sequencing, enabling the characterization of nearly complete genetic profiles. In total, we successfully sequenced 79 human genomes, each with a depth-of-coverage comprised between 0.1-to-5.5-fold. These genomic data provided valuable insights into the genetic makeup of individuals who were most commonly affected during these historical plague outbreaks. Our findings shed light on the genetic aspects of historical plague victims, furthering our understanding of the impact of genetics on susceptibility to these devastating epidemics.

https://www.ebi.ac.uk/ena/browser/view/PRJEB65913.

Is there someone to take care of these files?

I think that on GenArchivist someone is already aware of that study.

In any case, these are fairly modern populations; I don't know to what extent it is interesting to have G25 coords of people who are similar to the current one, especially if we don't have precise data on their places of origin.
J.S.
01-09-2026, 05:13 PM
I think that on GenArchivist someone is already aware of that study.

In any case, these are fairly modern populations; I don't know to what extent it is interesting to have G25 coords of people who are similar to the current one, especially if we don't have precise data on their places of origin.

As as Frenchman, i am very interrested in those samples. They are from Amiens, Beuavais, and Marseille.
Peterski
01-10-2026, 04:25 AM
Is there someone to take care of these files?

Unfortunately these are FASTQ files (not BAM files) and I can only process one FASTQ sample at a time (so it would take really a lot of time to process all 267 of them), unlike in case of BAM files which I can process even 100 samples at once. Also, somebody already tried to process them on GenArchivist and wrote that there is something wrong with these files.

But I will check tomorrow, I will download few of them and see if the files are okay or corrupted.


They are from Amiens, Beuavais, and Marseille.

Yeah, they are interesting samples for sure!
Peterski
01-10-2026, 04:30 AM
I10561 (male, ~30–40 years, tumulus 12, ~0.5× coverage). Published in Gnecchi-Ruscone et al. 2025 (Science Advances) supplementary table S11; also listed in Allen Ancient DNA Resource v54.1 (2025).
https://www.pnas.org/doi/10.1073/pnas.2418485122#supplementary-materials

If it is listed in AADR then there is no need to process it because the raw data is already available in AADR.

We can just ask Davidski to generate G25 coordinates for it.


Morez, A. Reconstructing Past Human Genetic Variation with Ancient DNA: Case Studies from Ancient Egypt and Medieval Europe. 2023. Liverpool John Moores University, PhD dissertation. https://researchonline.ljmu.ac.uk/id/eprint/18979/

It was authored by A. Morez and completed as a doctoral thesis at Liverpool John Moores University in 2023. This research includes an analysis of the genome of an Old Kingdom Egyptian individual, designated as NUE001.

If anyone has the genome for NUE001 to download for qpAdm analysis let me know.

These apparently come from another study and G25 coordinates exist for these two. If anyone has the genomes for Egyptian Old Kingdom Period Gizeh:I6409 and Egyptian Old Middle Kingdom Period Dahshur:I10020 let me know also.

Are these samples publicly available for download already?
J.S.
01-10-2026, 02:12 PM
edit
J.S.
01-10-2026, 02:13 PM
Unfortunately these are FASTQ files (not BAM files) and I can only process one FASTQ sample at a time (so it would take really a lot of time to process all 267 of them), unlike in case of BAM files which I can process even 100 samples at once. Also, somebody already tried to process them on GenArchivist and wrote that there is something wrong with these files.

But I will check tomorrow, I will download few of them and see if the files are okay or corrupted.



Yeah, they are interesting samples for sure!

Thanks a lot !