New mthap tool

[cmd_]

There is a new version of mthap (http://vps1.jameslick.com/dna/mthap-new) (notice mthap-new in the url) to analyze your MtDNA results preferably the FGS with the latest PyloTree MtDNA Build 14 (http://phylotree.org/tree/main.htm) dated April 5th. There are lots of new terminal haplogroups in most European haplogroups.

Note this is the test version and may contain issues.

The older version of mthap (http://vps1.jameslick.com/dna/mthap) has the PyloTree 13 Build.


Here is what I got;


Markers found (shown as differences to rCRS):

HVR2: 114T 263G
CR: 709A 750G 1438G 4769G 8860G 13101C 13711A 15326G
HVR1: 16288C 16362C

IMPORTANT NOTE: The above marker list is almost certainly incomplete due to limitations of genotyping technology and is not comparable to mtDNA sequencing results. It should not be used with services or tools that expect sequencing results, such as mitosearch.


Best mtDNA Haplogroup Matches:

1) H8c

Defining Markers for haplogroup H8c:
HVR2: (114T) 146C 152C 195C 263G
CR: 709A 750G 1438G 4769G 8860G 13101C 13711A 15326G
HVR1: 16288C 16362C

Marker path from rCRS to haplogroup H8c:
H2a2a1(rCRS) ⇨ 263G ⇨ H2a2a ⇨ 8860G 15326G ⇨ H2a2 ⇨ 750G ⇨ H2a ⇨ 4769G ⇨ H2 ⇨ 1438G ⇨ H ⇨ 195C ⇨ H(T195C) ⇨ 146C ⇨ H(T195C T146C) ⇨ 709A 13101C 16288C 16362C ⇨ H8 ⇨ (114T) ⇨ H8((C114T)) ⇨ 152C ⇨ H8((C114T) T152C) ⇨ 13711A ⇨ H8c

Imperfect Match. Your results contained differences with this haplogroup:
Matches(12): (114T) 263G 709A 750G 1438G 4769G 8860G 13101C 13711A 15326G 16288C 16362C
Untested(3): 146 152 195


2) H8((C114T))

Defining Markers for haplogroup H8((C114T)):
HVR2: (114T) 146C 195C 263G
CR: 709A 750G 1438G 4769G 8860G 13101C 15326G
HVR1: 16288C 16362C

Marker path from rCRS to haplogroup H8((C114T)) (plus extra markers):
H2a2a1(rCRS) ⇨ 263G ⇨ H2a2a ⇨ 8860G 15326G ⇨ H2a2 ⇨ 750G ⇨ H2a ⇨ 4769G ⇨ H2 ⇨ 1438G ⇨ H ⇨ 195C ⇨ H(T195C) ⇨ 146C ⇨ H(T195C T146C) ⇨ 709A 13101C 16288C 16362C ⇨ H8 ⇨ (114T) ⇨ H8((C114T)) ⇨ 13711A

Imperfect Match. Your results contained differences with this haplogroup:
Matches(11): (114T) 263G 709A 750G 1438G 4769G 8860G 13101C 15326G 16288C 16362C
Extras(1): 13711A
Untested(2): 146 195


3) H8((C114T) T152C)

Defining Markers for haplogroup H8((C114T) T152C):
HVR2: (114T) 146C 152C 195C 263G
CR: 709A 750G 1438G 4769G 8860G 13101C 15326G
HVR1: 16288C 16362C

Marker path from rCRS to haplogroup H8((C114T) T152C) (plus extra markers):
H2a2a1(rCRS) ⇨ 263G ⇨ H2a2a ⇨ 8860G 15326G ⇨ H2a2 ⇨ 750G ⇨ H2a ⇨ 4769G ⇨ H2 ⇨ 1438G ⇨ H ⇨ 195C ⇨ H(T195C) ⇨ 146C ⇨ H(T195C T146C) ⇨ 709A 13101C 16288C 16362C ⇨ H8 ⇨ (114T) ⇨ H8((C114T)) ⇨ 152C ⇨ H8((C114T) T152C) ⇨ 13711A

Imperfect Match. Your results contained differences with this haplogroup:
Matches(11): (114T) 263G 709A 750G 1438G 4769G 8860G 13101C 15326G 16288C 16362C
Extras(1): 13711A
Untested(3): 146 152 195

[Graham]

Fantastic! Up from K1c2 to K1c2a. Cheers.

[~Elizabeth~]

http://i43.tinypic.com/nd4mdy.jpg

[Graham]

There's not many of us about so far. :D
http://i55.photobucket.com/albums/g156/irnbru293/k1c2a.png

[Pallantides]

N1a1a2 is still my best match


N1a1a2 Matches(25)
N1a1a Matches(23) Mismatches(1)
N1a1 Matches(22) Mismatches(1)
N1a1a3 Matches(23) Mismatches(2)


some info about it here:
http://www.biomedcentral.com/1471-2148/10/304


Based on the current N1a haplogroup phylogeny and phylogeographic information on the farmer mtDNA associated subclades distribution, we suppose that the farmer lineages-DEB3, FLO1, and HAL2 might be derived from local communities and that they would have adopted the farming culture indigenously. Therefore, the results of the present study are somewhat difficult to reconcile with the hypothesis that the N1a lineages were brought into central Europe by the Neolithic farmers from the Near East by a major demic diffusion event. Moreover, the evidence from phylogeographic analysis of N1a lineages emphasizes that European farmer N1a lineages might have been originated from different sources- from eastern Europe (for N1a1a1), from Near East via southern Europe (for N1a1b and perhaps for N1a1a3), and from local central European source (for N1a1a2). It is thus clear that Neolithic farmers' migration into central Europe did not occur in a uniform way; indeed these results indicate that the Neolithic transition process was more complex in central Europe and possibly the farmer N1a lineages were brought in through the 'leapfrog' colonization process