Male yDNA (4%) of the following Japan Jomon specimens was modeled using yDNA of Qihe3 in "Human population history at the crossroads of East and Southeast Asia since 11,000 years ago":
I6341 Japan_Jomon Funadomari 3200 years ago
I13882 Japan_Jomon Rokutsu Shell Mound 3234 years ago
I13883 Japan_Jomon Rokutsu Shell Mound 2859 years ago
I13884 Japan_Jomon Rokutsu Shell Mound 4351 years ago
I13885 Japan_Jomon Rokutsu Shell Mound 3216 years ago
I13886 Japan_Jomon Rokutsu Shell Mound 4003 years ago
In addition, Qihe3 also provided the best model for modeling yDNA O1b in "Human population history at the crossroads of East and Southeast Asia since 11,000 years ago"
Thus, as early as 4351 years ago, during the Jomon Period, the interaction between yDNA O1b population and yDNA D-M64 population should have started in the Japanese Archipelago.
The only Late Neolithic non-Yayoi yDNA O1b specimen reported in Japan so far is yDNA O1b2-47z.
NAG007.A0102_merged Nagabaka Nagabaka_late Japan Late Neolithic 24,8908 125,2793 This study
https://www.theytree.com/tree/O-CTS1875
The modeling of “Human genetic history on the Tibetan Plateau in the past 5100 years” supported a link between the mtDNA N9b1 Jomon Ikawazu specimen and the East Asian specimen of the mtDNA lineage found in Austronesians which should be one of human lineages associated with the distribution of an Austronesian dog (“Ancient DNA Evidence from China Reveals the Expansion of Pacific Dogs”), but, according to the Chinese data, a population of this lineage found in Austronesians also bears traces of interaction with the Haminmangha culture whose dogs should be closer to wolves. Rokutsu Jomon and Funadomari Jomon specimens also mainly belong to mtDNA N9b1, but they were all modeled using the Qihe3 specimen in "Human population history at the crossroads of East and Southeast Asia since 11,000 years ago".
Thus, it is impossible to disconnect an O1b-related population whose ancestors interacted with Fudanomari Jomon and Rokutsu Jomon (the only Late Neolithic pre-Yayoi yDNA O1b specimen in Japan is O1b2-47z) from the mtDNA N9b1 Ikawazu-related population which interacted with populations which contributed dog lineages connected both to autosomally more “wolf-like” dogs and to East Asian dogs to Austronesians. No Jomon/pre-Yayoi yDNA male lineages other than D-M64 and O1b2-47z were reported from Japan so far. Thus, it is obviously impossible to say that any other lineages should be blamed for the rite discussed in the previous post (“Japanese grain (rice) farmers once worshiped wolves at shrines and left food offerings near their dens”), while indigenous D-M64 only could interact with wolf-dog distributing populations after the period when O1b2-47z had done so
A picture from “Ancient DNA Evidence from China Reveals the Expansion of Pacific Dogs”
https://i.ibb.co/hm1S2nY/12.png
However, European studies treat an indigenous East Asian dog as an unknown species and insist that their Western Eurasian-related dogs also have an autosomal connection to the dog which distributed along with Austronesians. From the Chinese point of view, a Western Eurasian dog is more closely related to a wolf. It is the Early Neolithic Haminmangha site in China which may provide a suitable dog/wolf-admixed species in China, and the Haminmangha-related population distributed in China and towards Siberia. The Haminmangha culture is treated in China as a culture, which had a archaeological connection to the Xinglongwa culture, while the Xinglongwa culture is treated today as an ancestral culture for ancestral bearers of all Transeurasian (“Altaic”) languages, according to Robbeets’ hypothesis. The ancestry connected to the Xinglongwa culture in “Ancient genomes from northern China suggest links between subsistence changes and human migration” was dominated by yDNA C2-M217 in “The deep population history of northern East Asia from the Late Pleistocene to the Holocene”.