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i'm not sure if that works. because other companies (as far as i know) don't test which allelle is from which parent , they just sort them in the alphabetical order. so in 23andme raw data i haveQuote:
Originally Posted by Kaspias
AG
AG
AG
and in ancestrydna (and in reality) it's
A G
G A
A G
check if you have any snps that aren't in alphabetical order (TC, GA), if you do than it's phased
result:
file 1
file 2:Code:Admix Results (sorted):
# Population Percent
1 Baltic 45.57
2 North_Atlantic 26.55
3 West_Med 10.72
4 East_Med 5.73
5 West_Asian 4.32
6 Sub-Saharan 2
7 Northeast_African 1.32
8 Red_Sea 1.27
9 Siberian 1.25
10 South_Asian 0.64
11 Amerindian 0.57
12 Oceanian 0.05
Single Population Sharing:
# Population (source) Distance
1 Ukrainian 4.11
2 Southwest_Russian 4.42
3 Polish 4.59
4 Estonian_Polish 4.67
5 Russian_Smolensk 4.91
6 Ukrainian_Lviv 5.15
7 Ukrainian_Belgorod 5.53
8 Belorussian 5.71
9 South_Polish 5.82
10 Kargopol_Russian 8.5
11 Lithuanian 9.4
12 Estonian 9.99
13 Croatian 10.44
14 Erzya 10.79
15 Finnish 11.74
16 East_Finnish 12.19
17 Southwest_Finnish 12.75
18 Moldavian 13.26
19 Hungarian 14.45
20 East_German 15.84
Mixed Mode Population Sharing:
# Primary Population (source) Secondary Population (source) Distance
1 92.4% Estonian_Polish + 7.6% Mozabite_Berber @ 1.91
2 92.5% Estonian_Polish + 7.5% Tunisian @ 2.06
3 92.5% Estonian_Polish + 7.5% Algerian @ 2.07
4 92.6% Estonian_Polish + 7.4% Moroccan @ 2.11
5 85% Lithuanian + 15% Tunisian @ 2.35
6 85.1% Lithuanian + 14.9% Mozabite_Berber @ 2.36
7 85% Lithuanian + 15% Algerian @ 2.46
8 92.5% Russian_Smolensk + 7.5% Mozabite_Berber @ 2.52
9 92.6% Russian_Smolensk + 7.4% Tunisian @ 2.61
10 92.5% Russian_Smolensk + 7.5% Algerian @ 2.63
11 92.8% Estonian_Polish + 7.2% Algerian_Jewish @ 2.66
12 91.5% Estonian_Polish + 8.5% West_Sicilian @ 2.69
13 85.3% Lithuanian + 14.7% Moroccan @ 2.69
14 92.7% Russian_Smolensk + 7.3% Moroccan @ 2.71
15 82% Lithuanian + 18% West_Sicilian @ 2.71
16 77.4% Estonian_Polish + 22.6% Moldavian @ 2.72
17 91.6% Estonian_Polish + 8.4% East_Sicilian @ 2.72
18 84.6% Lithuanian + 15.4% Algerian_Jewish @ 2.72
19 92.2% Estonian_Polish + 7.8% South_Italian @ 2.75
20 86.8% Estonian_Polish + 13.2% Bulgarian @ 2.76
Code:Admix Results (sorted):
# Population Percent
1 Baltic 46.05
2 North_Atlantic 28.12
3 West_Med 11.56
4 West_Asian 5.65
5 East_Med 3.17
6 Amerindian 3.02
7 East_Asian 1.08
8 Siberian 1.04
9 South_Asian 0.29
10 Oceanian 0.01
Single Population Sharing:
# Population (source) Distance
1 Polish 3.96
2 Ukrainian 4.17
3 Russian_Smolensk 4.99
4 Estonian_Polish 5.27
5 Ukrainian_Lviv 5.53
6 Southwest_Russian 5.59
7 Ukrainian_Belgorod 6.08
8 South_Polish 6.15
9 Belorussian 6.46
10 Kargopol_Russian 8.25
11 Estonian 8.78
12 Lithuanian 8.85
13 Erzya 11.04
14 Finnish 11.1
15 Croatian 11.33
16 Southwest_Finnish 11.78
17 East_Finnish 11.98
18 Moldavian 14.29
19 Hungarian 14.94
20 East_German 15.59
Mixed Mode Population Sharing:
# Primary Population (source) Secondary Population (source) Distance
1 97.4% Polish + 2.6% North_Amerindian @ 3.01
2 97.7% Polish + 2.3% Pima @ 3.04
3 97.7% Polish + 2.3% Mayan @ 3.04
4 98% Polish + 2% Karitiana @ 3.06
5 75% Ukrainian + 25% Lithuanian @ 3.12
6 96.6% Polish + 3.4% West_Greenlander @ 3.15
7 97.1% Polish + 2.9% East_Greenlander @ 3.2
8 75.6% Ukrainian + 24.4% Estonian @ 3.23
9 95.7% Polish + 4.3% MA-1 @ 3.42
10 84.4% Polish + 15.6% Erzya @ 3.46
11 63.3% Ukrainian + 36.7% Estonian_Polish @ 3.48
12 80.1% Polish + 19.9% Kargopol_Russian @ 3.5
13 65.5% Ukrainian_Lviv + 34.5% Lithuanian @ 3.51
14 97.8% Polish + 2.2% Chukchi @ 3.51
15 61.3% Ukrainian + 38.7% Russian_Smolensk @ 3.51
16 54.9% Polish + 45.1% Ukrainian @ 3.51
17 96.8% Russian_Smolensk + 3.2% Mayan @ 3.56
18 93.7% Polish + 6.3% Chuvash @ 3.6
19 98.1% Polish + 1.9% Koryak @ 3.61
20 57.1% Lithuanian + 42.9% Croatian @ 3.63
+ EUtest
file 1:
file 2:Code:Admix Results (sorted):
# Population Percent
1 SOUTH_BALTIC 31.2
2 EAST_EURO 22.89
3 ATLANTIC 13.17
4 NORTH-CENTRAL_EURO 12.95
5 WEST_MED 6.86
6 EAST_MED 4.7
7 MIDDLE_EASTERN 2.76
8 WEST_ASIAN 1.92
9 WEST_AFRICAN 1.37
10 SOUTH_ASIAN 1.25
11 SIBERIAN 0.68
12 EAST_AFRICAN 0.15
13 EAST_ASIAN 0.09
Single Population Sharing:
# Population (source) Distance
1 Ukrainian-Russian 5.5
2 UA 5.53
3 West_Russian 5.79
4 Belorussian 6.35
5 PL 6.72
6 Northwest_Russian 6.85
7 LIT 9.82
8 EE 10.13
9 East_Russian 11.76
10 North_Russian 12.23
11 Erzya 13.78
12 HU 14.46
13 East_Finnish 15
14 South_Finnish 15.21
15 AT 18.87
16 Serbian 19.48
17 North_Swedish 20.5
18 RO 20.98
19 Udmurt 22.12
20 Komi 23.12
Mixed Mode Population Sharing:
# Primary Population (source) Secondary Population (source) Distance
1 88.7% Northwest_Russian + 11.3% Algerian @ 2.9
2 88.7% Northwest_Russian + 11.3% Moroccan @ 3.16
3 90.4% Northwest_Russian + 9.6% Samaritan @ 3.36
4 90.1% Northwest_Russian + 9.9% Mozabite_Berber @ 3.41
5 86.2% Northwest_Russian + 13.8% AJ @ 3.41
6 87.3% Northwest_Russian + 12.7% South_Italian_&_Sicilian @ 3.5
7 89.7% Northwest_Russian + 10.3% IQ @ 3.63
8 87.3% Northwest_Russian + 12.7% GR @ 3.63
9 78.6% Northwest_Russian + 21.4% RO @ 3.92
10 91.1% Northwest_Russian + 8.9% Druze @ 4
11 90.8% Northwest_Russian + 9.2% Mandean @ 4.13
12 92.4% Northwest_Russian + 7.6% Bedouin @ 4.15
13 85.4% Northwest_Russian + 14.6% North_Italian @ 4.17
14 87% Northwest_Russian + 13% Tuscan @ 4.17
15 91.1% Belorussian + 8.9% Algerian @ 4.23
16 91.9% Belorussian + 8.1% Mozabite_Berber @ 4.23
17 90.8% Northwest_Russian + 9.2% Assyrian @ 4.25
18 78.2% Northwest_Russian + 21.8% Serbian @ 4.35
19 91.3% Belorussian + 8.7% Moroccan @ 4.41
20 91% Northwest_Russian + 9% Armenian @ 4.42
Code:Admix Results (sorted):
# Population Percent
1 SOUTH_BALTIC 29.19
2 EAST_EURO 25.12
3 NORTH-CENTRAL_EURO 21.37
4 ATLANTIC 11.81
5 WEST_MED 6.52
6 WEST_ASIAN 3.35
7 EAST_ASIAN 1.25
8 SIBERIAN 0.81
9 EAST_MED 0.57
Single Population Sharing:
# Population (source) Distance
1 Belorussian 5.47
2 Ukrainian-Russian 5.67
3 West_Russian 5.77
4 UA 6.3
5 PL 6.45
6 EE 6.72
7 Northwest_Russian 7.3
8 LIT 9.48
9 East_Russian 9.72
10 South_Finnish 10.39
11 East_Finnish 10.59
12 North_Russian 10.6
13 Erzya 12.65
14 North_Swedish 15.97
15 HU 16.18
16 AT 19.05
17 South_&_Central_Swedish 19.08
18 NO 20.32
19 Serbian 21.29
20 Komi 21.3
Mixed Mode Population Sharing:
# Primary Population (source) Secondary Population (source) Distance
1 58.8% Ukrainian-Russian + 41.2% EE @ 4.42
2 74.7% Belorussian + 25.3% South_Finnish @ 4.45
3 83.1% Belorussian + 16.9% North_Swedish @ 4.5
4 75.6% Belorussian + 24.4% East_Finnish @ 4.51
5 68.8% UA + 31.2% East_Finnish @ 4.58
6 73.8% Ukrainian-Russian + 26.2% South_Finnish @ 4.6
7 73% Northwest_Russian + 27% North_Swedish @ 4.61
8 87.1% Belorussian + 12.9% NO @ 4.62
9 77.9% Northwest_Russian + 22.1% NO @ 4.67
10 75% Belorussian + 25% East_Russian @ 4.68
11 86.7% Belorussian + 13.3% South_&_Central_Swedish @ 4.68
12 76.8% Northwest_Russian + 23.2% South_&_Central_Swedish @ 4.7
13 89% Belorussian + 11% DK @ 4.75
14 80.1% Northwest_Russian + 19.9% DK @ 4.82
15 69.5% UA + 30.5% South_Finnish @ 4.84
16 84% Ukrainian-Russian + 16% North_Swedish @ 4.87
17 90.3% Belorussian + 9.7% NL @ 4.9
18 91.2% Belorussian + 8.8% English @ 4.92
19 89.8% Belorussian + 10.2% Komi @ 4.94
20 86.9% Ukrainian-Russian + 13.1% South_&_Central_Swedish @ 4.95
looks accurate
Could someone create these 2 files for me If easy?no excel...
AncestryDNA and MyHeritage DNA are currently the only two companies which phase the data before assigning matches. Ancestry has developing its own phasing algorithm known as Underdog. The technical details are provided in the AncestryDNA Matching White Paper. They claim to have an error rate of under 1% and the error rate improves as the size of the training reference dataset increases. As of the beginning of 2016, AncestryDNA uses a reference panel of more than 300,000 genotypes. The details of MyHeritage DNA's phasing is given in the their blog post on major updates and improvements to MyHeritage DNA matching. See also the presentation given by Yaniv Erlich, MyHeritage DNA's Chief Scientific Officer, at Rootstech 2018 MyHeritage DNA 1010: from test to resultsQuote:
Originally Posted by vbnetkhio
Note, however, that if you download the raw data from AncestryDNA or MyHeritage to upload to third-party sites you will receive a file of unphased data.
https://isogg.org/wiki/Phasing
hmm.. i'm sure my ancestry raw data is at least partially phased.. i have GCs and CGs, TAs and ATs etc... maybe they started doing that recentlyQuote:
Originally Posted by Lemgrant
Yeah... I can do it for you. You have to email me your txt file.Quote:
Originally Posted by Dorian
The results seem to be a mixture of my own rather than anything that is real. None of the two files fit my father.
You can also use Google Docs online. It's free !Quote:
Originally Posted by Dorian