If others are reducing the regional averages based on too much similarity, England probably only needs 4 averages (Southeast/Southwest/Midlands/North), and Dutch 3 (North/Central/South). I'll let Lukasz decide.
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If others are reducing the regional averages based on too much similarity, England probably only needs 4 averages (Southeast/Southwest/Midlands/North), and Dutch 3 (North/Central/South). I'll let Lukasz decide.
I started to look into the K15 Updated source and I noticed some things that I think should be corrected and improved upon:
Sicily is an absolute mess, why in the first place do so many regions needed for a rather small island:
East_Sicilian,9.75,13.27,6.39,2.26,17.36,14.43,26. 95,6.76,0.52,0.03,0.00,0.06,0.25,1.60,0.36
Italy_Central_Sicily,8.94,14.64,4.78,1.31,17.60,14 .12,29.14,6.68,0.05,0.15,0.03,0.14,0.20,1.84,0.36
Italy_East_Sicily,8.07,12.81,4.41,1.82,18.07,15.44 ,30.59,6.26,0.22,0.18,0.13,0.07,0.23,1.20,0.48
Italy_West_Sicily,9.37,13.38,4.79,1.71,18.12,13.93 ,30.01,5.89,0.32,0.25,0.05,0.16,0.21,0.98,0.85
Sicily_Palermo,9.2,14.08,4.66,1.91,18.3,14.52,28.6 4,5.94,0.23,0.22,0.05,0.12,0.24,1.16,0.73
Sicily_Ragusa,11.12,12.93,4.73,2.63,17.95,13.97,27 .54,6.07,0.21,0.04,0.37,0.07,0.17,1.19,1.02
Sicily_Syracuse,11,15.57,4.67,2.10,18.30,13.89,27. 23,4.66,0.16,0.31,0.18,0,0.23,0.95,0.75
Sicily_Enna,7.39,16.93,4.77,1.83,18.16,12.71,29.27 ,6.38,0.3,0.15,0.02,0,0.39,1.10,0.59
Sicily_Caltanisetta,9.17,14.82,4.89,1.43,18.03,14. 07,28.22,6.64,0.12,0.12,0.15,0.08,0.37,1.51,0.38
Sicily_Trapani,11.70,14.05,4.75,1.88,18.94,13.03,2 7.77,5.58,0.30,0.25,0.09,0.03,0.11,1.09,0.39
Sicily_Messina,8.21,12.78,4.16,1.84,18.56,14.77,30 .57,6.29,0.14,0.15,0.11,0.05,0.30,1.39,0.28
Sicily_Catania,8.42,14.04,4.03,1.89,18.05,14.97,30 .16,5.57,0.26,0.26,0.03,0.15,0.23,1.42,0.49
Sicily_Agrigento,9.18,13.12,5.12,1.76,18.22,13.22, 30.11,5.65,0.81,0.04,0.15,0.24,0.21,1.32,0.85
West_Sicilian,9.76,18.32,4.70,3.27,17.76,10.64,26. 75,5.37,0.57,0.19,0.08,0.01,0.52,1.33,0.72
This should probably be better renamed to Walloon:
FRA_Belgica,30.06,25.90,9.94,7.14,13.16,4.86,5.19, 1.51,0.65,0.21,0.22,0.33,0.20,0.26,0.38
In these replace FRA with French:
FRA_Central,27.38,27.39,8.88,6.00,16.19,3.96,6.85, 1.54,0.33,0.16,0.21,0.29,0.25,0.37,0.19
FRA_Alsace,28.49,24.36,12.31,7.12,12.76,5.91,6.23, 1.50,0.20,0.31,0.14,0.20,0.14,0.13,0.19
FRA_Armorica,33.63,28.77,9.43,8.78,10.92,3.51,2.23 ,0.79,0.81,0.15,0.14,0.39,0.18,0.15,0.12
FRA_Septimania,23.44,30.07,6.86,5.00,20.86,2.32,7. 92,1.58,0.42,0.08,0.14,0.41,0.38,0.36,0.15
FRA_Provence,21.75,23.86,7.06,4.44,18.01,6.15,14.5 5,2.44,0.32,0.13,0.18,0.25,0.24,0.47,0.16
FRA_Aquitania,20.30,39.32,4.81,2.49,24.29,0.77,4.4 4,1.91,0.45,0.30,0.23,0.20,0.21,0.17,0.13
In these replace GR into Greek:
GR_Macedonia,10.845,12.2383333333,13.4233333333,6. 9733333333,15.06,14.4533333333,22.6516666667,3.188 3333333,0.1866666667,0.1683333333,0.2716666667,0,0 .3683333333,0.175,0
GR_Peloponese,10.215,14.68875,10.57125,5.87625,15. 37375,13.35875,23.97125,3.76375,1.17875,0.2175,0.1 6625,0.10875,0.35125,0.15625,0
Only one should remain, and renamed into Kosovar:
Kosovo_Albanian,12.9577777778,17.17,12.5977777778, 5.7488888889,16.2822222222,12.4444444444,19.543333 3333,2.4611111111,0.2788888889,0.1011111111,0.1266 666667,0.1477777778,0.1333333333,0,0
Albanian-Kosovo,14.93,15.66,11.94,6.23,18.27,10.32,19.43,2. 54,0.09,0.30,0.04,0.04,0.21,0.00,0.00
Here also only one should remain:
Macedonian,15.415,15.55,16.2835714286,10.425,13.62 5,9.8878571429,16.0614285714,2.0085714286,0.21,0.1 207142857,0.0114285714,0.1507142857,0.2257142857,0 .0028571429,0.0207142857
Macedonian_2,14.32,14.52,13.71,9.18,15.61,10.30,18 .71,2.88,0.09,0.17,0.05,0.18,0.26,0.02,0.00
Same here:
Norwegian,39.73,23.47,13.26,11.48,6.36,2.24,0.80,0 .14,0.81,0.08,0.50,0.72,0.32,0.06,0.04
Norway,39.19,23.96,13.30,11.79,6.40,2.39,0.24,0.07 ,0.47,0.05,1.08,0.58,0.25,0.17,0.06
Here I think only one should remain:
Southwest_French,18.23,33.82,8.51,5.22,23.54,1.68, 6.12,1.97,0.21,0.04,0.21,0.38,0.02,0.05,0.00
FRA_Aquitania,20.30,39.32,4.81,2.49,24.29,0.77,4.4 4,1.91,0.45,0.30,0.23,0.20,0.21,0.17,0.13
Same here:
Tuscan,14.30,20.09,6.44,2.92,19.82,10.04,20.77,4.7 5,0.26,0.01,0.08,0.01,0.22,0.21,0.08
Italy_Tuscany,17.25,20.05,6.52,2.79,20.41,9.07,19. 20,3.54,0.57,0.25,0.02,0.06,0.14,0.08,0.02
You could at least revise the Hungarian average for Dodecad. I don't even need 5 different HUN references. 15 Hungarian samples from various parts of the country would be enough.Quote:
Originally Posted by Dunai
...
K13 Updated Targeted
I use Ukrainian proxy for Polish and Russian
Distance: 261.7027% / 2.61702668
Target: Abriekman
54.9 Ukrainian_Belgorod
31.9 Ukrainian_Lviv
6.2 Bulgaria_Southcentral
2.8 Kurdish_Jewish
2.7 Algerian_Jewish
1.5 Mountain_Jew_Chechnya
The most accurate run for me, match my 23andme results perfectly, the same percentage of Eastern European as here
I believe that we need a revision for K13.
I think, maybe I am wrong, some samples are contaminated or just outliers such as Greek Istanbul or Greek Macedonia Thrace. They have almost 1/8 foreign ancestry, or I am wrong as I mentioned.
On the other hand, we literally have samples from cities for Balkan Turks. I think they should be grouped like K12b.
Here's PuntDNAL K15 for me, underrated calculator in my opinion:
Distance: 115.0292% / 1.15029196
Target: Chris | ADC: 0.25x RC
93.4 Serbian
3.0 Italian
2.6 Georgian
1.0 Japanese
Distance to: Chris (Top 5)
2.56803427 Serbian
4.82398176 Bosnian
5.69971929 Macedonian
7.58820137 Romanian
8.31798052 Bulgarian
http://vahaduo.genetics.ovh/puntdnal-k15-vahaduo.htm
Is Lucas no longer updating the averages?
I am... I just wait for end of discussion and some general conclusion what to change:) I also agree there are especially too many Turkish, and specifically Balkan Turkish refs in K13. Should be groupped. Maybe by Kaspais.Quote:
Originally Posted by Ion Basescul
Please update these then. I don't think that anyone has any objections about them.Quote:
Originally Posted by Lucas
Also, do you know what happened to the gradient in the "Distance" tab? Now everything is coloured blue, so it's not working as intended.