Gedmatch calculators on Vahaduo

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04-12-2021, 01:00 PM
Eleonor

K15 updated

Distance to: Eleonor
4.97232340 French_North-East
5.23052579 German_Bavarian
5.31031073 French_Alsace
5.45021101 Dutch_South
5.77921275 Belgian
6.00448999 Afrikaner
6.17663339 Swiss_German
6.86713186 French_Brittany
7.64792782 Pennsylvania_Dutch
7.92807038 English_Southeast
8.03269569 French_Central
8.20984165 West_German
8.47274454 English_Midlands
8.56854130 English
8.61048198 English_Southwest
8.64942773 North_German
9.14555630 Welsh
9.17817520 English_North
9.48264731 Dutch
9.55251276 Austria-Burgenland

More accurate for me than other calculators :)

Target: Eleonor
Distance: 1.1389% / 1.13885436
55.6 West_Norwegian
19.6 French_Basque
10.0 Lithuanian
8.9 Sardinian
5.9 North_Ossetian

Distance to: Eleonor
3.79790235 85.80% North_German + 14.20% Sardinian
3.89382498 32.00% English_Southwest + 68.00% French_Alsace
3.92996994 69.80% French_Alsace + 30.20% Welsh
3.96487063 24.80% East_German + 75.20% French_North-East
3.98044908 61.40% French_Alsace + 38.60% French_Brittany
3.99495766 29.80% English_North + 70.20% French_Alsace
4.00597242 31.60% English + 68.40% French_Alsace
4.04285027 33.60% English_Southeast + 66.40% French_Alsace
4.04510947 31.60% English_Midlands + 68.40% French_Alsace
4.07125831 74.00% French_Alsace + 26.00% Irish_Leinster
4.07587666 92.00% French_North-East + 8.00% Lithuanian
4.08467180 75.00% French_Alsace + 25.00% Irish_Munster
4.08995627 75.40% French_Alsace + 24.60% Irish_Ulster
4.09234242 75.20% French_Alsace + 24.80% Irish
4.09442766 88.40% French_North-East + 11.60% Polish_Masuria
4.09462097 92.60% French_North-East + 7.40% Latvian
4.12601640 89.40% French_North-East + 10.60% Polish
4.13026314 9.40% Estonian + 90.60% French_North-East
4.13975531 73.80% French_Brittany + 26.20% Slovenian
4.14302072 74.80% French_Alsace + 25.20% Scottish
4.16594040 77.20% French_Alsace + 22.80% Irish_Connacht
4.18004854 48.40% Dutch_South + 51.60% French_Alsace
4.18158131 87.80% French_North-East + 12.20% Sorb_Lusatia
4.19210442 8.40% Estonian_Polish + 91.60% French_North-East
4.19969059 8.40% Belorussian + 91.60% French_North-East
04-13-2021, 06:39 PM
Jana

Could you replace old Montenegrin average with new, weighted one?

Code:

Montenegrin,24.13,26.54,18.30,9.74,17.15,2.10,0.23,0.26,0.68,0.40,0.32,0.07,0.06

Vbnethkio made it.
04-15-2021, 12:43 PM
Ajeje Brazorf

This may be of interest to some of you.

Quote:

Originally Posted by Arza

Another off-topic:

https://www.ebi.ac.uk/ena/browser/view/PRJEB39997

Ancient DNA from pre-Slavic and Slavic individuals was extracted to compare human genetic diversity before and after a possible demographic event traditionally associated with Slavic ethnogenesis.
Study Title: Genetic Diversity in Migration Period and Early Middle Ages
Center Name: University of Fribourg
Study Name: Pre-Slavic and Slavic Ancient DNA

Each sample consists of 10 or 12 paired reads (20 or 24 fastq files), but I've used only one file per sample because all of them combined weight more than a half terabyte. Outcome is quite noisy as the reads weren't processed in any way besides mapping and genotyping. Treat everything here as preliminary.

LIB11 https://www.yfull.com/tree/E-L241/
LIB2 https://www.yfull.com/tree/I-Z180/
LIB3 NA
POH11 https://www.yfull.com/tree/R-Z283/
POH13 NA
POH27 https://www.yfull.com/tree/R-P312/ eventually https://www.yfull.com/tree/R-Y3267/
POH28 https://www.yfull.com/tree/R-Z92/
POH3 NA
POH36 https://www.yfull.com/tree/I-S17250/
POH40 NA
POH41 https://www.yfull.com/tree/I-Z16971/
POH44 in progress
April 15, 2021 at 1:26 AM

Quote:

Originally Posted by ambron

Arza, I already know - LIB is Breclav-Libiva (5th century), POH is Pohansko (early Middle Ages). There is little LIB, so maybe you can analyze it.
April 15, 2021 at 2:48 AM

Quote:

Originally Posted by Davidski

@Arza

https://drive.google.com/file/d/1-j0...ew?usp=sharing

Code:

Vahaduo Admixture JS Target: Migration:POH41 Distance: 2.5056% / 0.02505599 | R3P 75.4 Latvian 15.0 Spanish_La_Rioja 9.6 Greek_Central_Anatolia Target: Migration:POH40 Distance: 2.9513% / 0.02951252 | R3P 55.4 Lithuanian_SZ 39.6 French_Pas-de-Calais 5.0 Georgian_Imer Target: Migration:POH36 Distance: 2.9708% / 0.02970802 | R3P 47.4 Sorb_Niederlausitz 39.0 Lithuanian_VA 13.6 Spanish_La_Rioja Target: Migration:POH28 Distance: 3.3861% / 0.03386055 | R3P 91.8 Lithuanian_PZ 8.2 Sardinian Target: Migration:POH27 Distance: 2.9932% / 0.02993200 | R3P 66.8 Rumelia_East 22.4 Sorb_Niederlausitz 10.8 Spanish_Soria Target: Migration:POH13 Distance: 2.6572% / 0.02657205 | R3P 90.0 Lithuanian_VZ 6.2 Lithuanian_PZ 3.8 Berber_MAR_TIZ Target: Migration:POH11 Distance: 2.8810% / 0.02880995 | R3P 52.2 Bosnian 24.4 Lithuanian_RA 23.4 Sorb_Niederlausitz Target: Migration:POH3 Distance: 3.1256% / 0.03125567 | R3P 68.4 Russian_Voronez 21.0 Sardinian 10.6 Abkhasian Target: Migration:LIB11 Distance: 2.2954% / 0.02295351 | R3P 84.8 Sorb_Niederlausitz 8.0 Berber_Tunisia_Chen 7.2 Georgian_Imer Target: Migration:LIB3 Distance: 2.8603% / 0.02860342 | R3P 38.0 Spanish_Asturias 36.6 Italian_Molise 25.4 Italian_Liguria Target: Migration:LIB2 Distance: 2.9582% / 0.02958156 | R3P 64.4 Danish 25.0 Icelandic 10.6 Lithuanian_PZ
04-15-2021, 08:32 PM
Lucas

Quote:

Originally Posted by Ajeje Brazorf

This may be of interest to some of you.

Code:

Vahaduo Admixture JS Target: Migration:POH41 Distance: 2.5056% / 0.02505599 | R3P 75.4 Latvian 15.0 Spanish_La_Rioja 9.6 Greek_Central_Anatolia Target: Migration:POH40 Distance: 2.9513% / 0.02951252 | R3P 55.4 Lithuanian_SZ 39.6 French_Pas-de-Calais 5.0 Georgian_Imer Target: Migration:POH36 Distance: 2.9708% / 0.02970802 | R3P 47.4 Sorb_Niederlausitz 39.0 Lithuanian_VA 13.6 Spanish_La_Rioja Target: Migration:POH28 Distance: 3.3861% / 0.03386055 | R3P 91.8 Lithuanian_PZ 8.2 Sardinian Target: Migration:POH27 Distance: 2.9932% / 0.02993200 | R3P 66.8 Rumelia_East 22.4 Sorb_Niederlausitz 10.8 Spanish_Soria Target: Migration:POH13 Distance: 2.6572% / 0.02657205 | R3P 90.0 Lithuanian_VZ 6.2 Lithuanian_PZ 3.8 Berber_MAR_TIZ Target: Migration:POH11 Distance: 2.8810% / 0.02880995 | R3P 52.2 Bosnian 24.4 Lithuanian_RA 23.4 Sorb_Niederlausitz Target: Migration:POH3 Distance: 3.1256% / 0.03125567 | R3P 68.4 Russian_Voronez 21.0 Sardinian 10.6 Abkhasian Target: Migration:LIB11 Distance: 2.2954% / 0.02295351 | R3P 84.8 Sorb_Niederlausitz 8.0 Berber_Tunisia_Chen 7.2 Georgian_Imer Target: Migration:LIB3 Distance: 2.8603% / 0.02860342 | R3P 38.0 Spanish_Asturias 36.6 Italian_Molise 25.4 Italian_Liguria Target: Migration:LIB2 Distance: 2.9582% / 0.02958156 | R3P 64.4 Danish 25.0 Icelandic 10.6 Lithuanian_PZ

added
Do you know link to paper?
04-15-2021, 08:33 PM
Leto

Hey Luke, don't miss the Creoda update! ;)
04-15-2021, 08:35 PM
Leto

By the way, can someone add Lezgins to G25? You may as well use the old Behar data, doesn't matter since the calculator effect doesn't apply to G25.
04-15-2021, 09:17 PM
Lucas

Quote:

Originally Posted by Leto

By the way, can someone add Lezgins to G25? You may as well use the old Behar data, doesn't matter since the calculator effect doesn't apply to G25.

They aren't there????????
04-15-2021, 09:39 PM
Leto

Quote:

Originally Posted by Lucas

They aren't there????????

Nope. Dawid has completely ignored them.
04-18-2021, 08:09 AM
Andrea

Could someone build a PCA chart for me to understand how he positioned me genetically?
This is my k13 results:
# Population Percent
1 North_Atlantic 28.08
2 East_Med 27.29
3 West_Med 23.49
4 Baltic 8.98
5 West_Asian 7.23
6 Red_Sea 3.34
7 Northeast_African 0.69
8 Oceanian 0.49
9 Amerindian 0.41

Single Population Sharing:

# Population (source) Distance
1 Tuscan 3.19
2 West_Sicilian 7.35
3 North_Italian 8.1
4 Italian_Abruzzo 9.07
5 Greek_Thessaly 11.41
6 East_Sicilian 12.32
7 Central_Greek 12.47
8 South_Italian 12.99
9 Ashkenazi 14.13
10 Spanish_Extremadura 15.38
11 Portuguese 15.51
12 Spanish_Murcia 15.97
13 Spanish_Andalucia 15.98
14 Italian_Jewish 16.35
15 Spanish_Valencia 16.49
16 Sephardic_Jewish 17.01
17 Bulgarian 17.03
18 Spanish_Galicia 17.15
19 Algerian_Jewish 17.49
20 Spanish_Castilla_Y_Leon 17.52

Mixed Mode Population Sharing:

# Primary Population (source) Secondary Population (source) Distance
1 51.8% Italian_Jewish + 48.2% Spanish_Cataluna @ 2.27
2 67.7% North_Italian + 32.3% Italian_Jewish @ 2.49
3 59.3% Ashkenazi + 40.7% Spanish_Aragon @ 2.64
4 50.2% Italian_Jewish + 49.8% Spanish_Valencia @ 2.67
5 54% Ashkenazi + 46% Spanish_Valencia @ 2.79
6 67% Spanish_Valencia + 33% Lebanese_Druze @ 2.8
7 70% Ashkenazi + 30% French_Basque @ 2.82
8 92.6% Tuscan + 7.4% Italian_Jewish @ 2.92
9 53.2% Ashkenazi + 46.8% Spanish_Andalucia @ 2.95
10 67.5% Spanish_Valencia + 32.5% Lebanese_Christian @ 2.99
11 57.6% Italian_Jewish + 42.4% Southwest_French @ 3.03
12 95.7% Tuscan + 4.3% Tunisian_Jewish @ 3.04
13 95.8% Tuscan + 4.2% Libyan_Jewish @ 3.05
14 95% Tuscan + 5% Algerian_Jewish @ 3.06
15 95% Tuscan + 5% Sephardic_Jewish @ 3.07
16 98.3% Tuscan + 1.7% Yemenite_Jewish @ 3.09
17 97.9% Tuscan + 2.1% Lebanese_Druze @ 3.11
18 95.2% Tuscan + 4.8% Ashkenazi @ 3.11
19 73.8% North_Italian + 26.2% Tunisian_Jewish @ 3.13
20 70.9% West_Sicilian + 29.1% Spanish_Valencia @ 3.14
This i my k15 v2 results:
# Population Percent
1 East_Med 23.89
2 Atlantic 21.83
3 West_Med 19.12
4 North_Sea 15.49
5 West_Asian 8.48
6 Baltic 5.72
7 Red_Sea 3.1
8 Eastern_Euro 1.18
9 Northeast_African 0.73
10 Oceanian 0.34
11 Amerindian 0.11

Single Population Sharing:

# Population (source) Distance
1 Tuscan 4.22
2 West_Sicilian 7.32
3 North_Italian 8
4 Italian_Abruzzo 8.57
5 East_Sicilian 11.26
6 Greek 11.4
7 Greek_Thessaly 11.47
8 Central_Greek 11.6
9 South_Italian 12.11
10 Ashkenazi 13.65
11 Spanish_Murcia 14.18
12 Spanish_Extremadura 14.28
13 Spanish_Andalucia 14.57
14 Portuguese 14.65
15 Italian_Jewish 14.8
16 Bulgarian 15.51
17 Spanish_Valencia 15.66
18 Spanish_Castilla_Y_Leon 15.72
19 Spanish_Cataluna 15.72
20 Spanish_Galicia 15.87

Mixed Mode Population Sharing:

# Primary Population (source) Secondary Population (source) Distance
1 54.2% South_Italian + 45.8% Spanish_Murcia @ 3.2
2 51.6% Italian_Jewish + 48.4% Spanish_Cataluna @ 3.3
3 81.7% North_Italian + 18.3% Lebanese_Druze @ 3.32
4 56.9% South_Italian + 43.1% Spanish_Cataluna @ 3.37
5 61.4% Spanish_Cataluna + 38.6% Cyprian @ 3.43
6 67.9% Spanish_Cataluna + 32.1% Lebanese_Druze @ 3.44
7 67.6% Spanish_Cataluna + 32.4% Lebanese_Christian @ 3.49
8 63.5% Spanish_Cantabria + 36.5% Lebanese_Druze @ 3.61
9 66.8% North_Italian + 33.2% Italian_Jewish @ 3.65
10 64% Spanish_Murcia + 36% Cyprian @ 3.66
11 70.7% West_Sicilian + 29.3% Spanish_Cataluna @ 3.67
12 67.9% Spanish_Castilla_Y_Leon + 32.1% Lebanese_Druze @ 3.75
13 57% South_Italian + 43% Spanish_Castilla_Y_Leon @ 3.75
14 52.9% West_Sicilian + 47.1% North_Italian @ 3.76
15 70.3% Spanish_Murcia + 29.7% Lebanese_Druze @ 3.76
16 56.9% South_Italian + 43.1% Spanish_Valencia @ 3.78
17 73.9% North_Italian + 26.1% Tunisian_Jewish @ 3.79
18 68% Spanish_Valencia + 32% Lebanese_Druze @ 3.8
19 68.7% West_Sicilian + 31.3% Spanish_Murcia @ 3.86
20 66.6% Spanish_Cataluna + 33.4% Samaritan @ 3.89
04-18-2021, 08:53 AM
Petalpusher

Quote:

Originally Posted by Andrea

Could someone build a PCA chart for me to understand how he positioned me genetically?
This is my k13 results:
# Population Percent
1 North_Atlantic 28.08
2 East_Med 27.29
3 West_Med 23.49
4 Baltic 8.98
5 West_Asian 7.23
6 Red_Sea 3.34
7 Northeast_African 0.69
8 Oceanian 0.49
9 Amerindian 0.41

You can use this K15 tool to make your own easily:
https://gen3553.pagesperso-orange.fr/ADN/K15.htm

Spoiler alert you are going to be somewhere around Tuscany, maybe a bit south of it. So regular central Italian.

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