Dodecad Ancestry Project

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08-13-2011, 06:52 PM
Osweo

Quote:

Originally Posted by Fresa Salvaje

My personal results for 30:

In other words;
[QUOTE]
Iberian
Iberian
Iberian
Iberian
Mediterranean
Mediterranean
Mediterranean
Iberian
Med
Med
Gaul
Med
Gaul
Med
Med
Med
Germania
Germania
BRITISH
BRITISH
Jew
GAELIC - Argyle is 'Eastern Gael' - a Gaelic colonised part of Britain
Jew
Med
Med/Slav
Germania
Germania
Germania
Med
Balkano-Med
08-13-2011, 07:56 PM
Amapola

Loki's result, uh St Loki :p Fresa's courtesy ;)

[1,] "CEU" "10.1005"
[2,] "N._European" "10.9398"
[3,] "German_D" "11.3309"
[4,] "Slovenian" "11.9122"
[5,] "Argyll_1KG" "11.9445"
[6,] "Orcadian" "12.3891"
[7,] "Orkney_1KG" "12.7934"
[8,] "French" "13.9101"
[9,] "French_D" "14.0915"
[10,] "Hungarians" "16.5795"
[11,] "Mixed_Germanic_D" "17.4161"
[12,] "Dutch_D" "19.0431"
[13,] "Kent_1KG" "21.4299"
[14,] "Tuscan_H" "22.0259"
[15,] "TSI" "22.1499"
[16,] "Tuscan_X" "22.1504"
[17,] "N_Italian_D" "22.5493"
[18,] "Portuguese_D" "23.4017"
[19,] "British_D" "23.5064"
[20,] "British_Isles_D" "23.5323"
[21,] "Cornwall_1KG" "24.0699"
[22,] "Spaniards" "25.1617"
[23,] "French_Basque" "25.5853"
[24,] "Swedish_D" "25.8232"
[25,] "IBS" "25.9021"
[26,] "Balkans_D" "25.9933"
[27,] "Spanish_D" "26.1377"
[28,] "Romanians_14" "26.5761"
[29,] "Irish_D" "26.7802"
[30,] "Norwegian_D" "27.3417"
>
08-13-2011, 08:09 PM
Amapola

[QUOTE=Osweo;499245]In other words;

Quote:

Iberian
Iberian
Iberian
Iberian
Mediterranean
Mediterranean
Mediterranean
Iberian
Med
Med
Gaul
Med
Gaul
Med
Med
Med
Germania
Germania
BRITISH
BRITISH
Jew
GAELIC - Argyle is 'Eastern Gael' - a Gaelic colonised part of Britain
Jew
Med
Med/Slav
Germania
Germania
Germania
Med
Balkano-Med

In other words, simply the best :embarrassed :thumb001:
08-17-2011, 01:19 AM
Scrapple

http://dodecad.blogspot.com/

Version 2.0 is out

Quote:

There are many new features in DIYDodecad 2.0, including by-chromosome and by-segment ancestry analysis, and a visualization tool that can be used in conjunction with it. Simple admixture analysis as in version 1.0 is, of course, also included.

Haven't run mine yet going to do that tomorrow.

Edit more info from LarryinCA You have to modidy the dv3.par file by changing the "genomewide" to "bychr" to get this output when you run DIYDodecadWin dv3.par.
08-17-2011, 02:07 AM
Scrapple

Code:

Chr E EuropeW Europe Med Neo-Afr W Asia S Asia NE Asia SE Asia E Afr SW Asia NW Africa PAfrica 1 22.36 39.31 28.96 0 3.64 3.95 0.01 0.92 0 0.64 0.21 0 2 22.5 44.87 23.18 0 5.27 4.17 0 0 0 0 0 0 3 25.65 34.61 29.65 0 9.12 0 0 0 0.57 0.37 0.04 0 4 24.58 43.99 22.04 0 0 0.01 1.97 0.5 0 6.1 0.81 0 5 29.12 46.07 17.11 0 0.18 2.62 0 0 0.4 4.21 0 0.29 6 23.05 48.15 24.03 0.59 2.14 0 0 0 0 2.05 0 0 7 28.28 37.42 17.46 0 12.96 0 1.48 2.38 0 0 0.01 0 8 29.09 42.85 16.9 0 11.07 0.01 0.09 0 0 0 0 0 9 13.33 36.73 24.29 0 14.51 6.59 1.23 0 0 1.77 0.03 1.53 10 18.11 37.84 29.42 0 0.06 0 0 0 0 14.54 0.03 0 11 20.97 33.35 23.24 0 18.06 0 2.76 0 0 0.01 1.62 0 12 27.34 41.17 21.05 0 9.95 0 0 0 0 0.14 0 0.34 13 25.78 46.09 28.13 0 0 0 0 0 0 0 0 0 14 31.02 23.62 22.71 0 18.39 0.01 2.03 0.8 0 0.01 1.41 0 15 7.9 44.66 38.46 0 3.57 0 1.45 0 0 2 1.95 0 16 20.41 28.67 29.62 0 11.48 0 5.57 0.27 0 0 3.98 0 17 28.09 34.13 25.57 1.01 9.8 0.65 0 0.01 0 0.55 0 0.18 18 34.89 20.34 27.4 0 17.36 0 0 0 0 0.01 0 0 19 24.13 40.47 32.17 0 0.32 0 2.91 0 0 0 0 0 20 10.16 41.22 23.9 0 21.31 0.59 2.14 0.67 0 0.01 0 0 21 14.01 39.42 24.93 0 16.73 0 0.02 0 3.41 0 1.48 0 22 34.36 39.53 7.08 0 15.4 0 0 0 0 2.01 1.61 0

Interesting SW Asia on Chr 10. No Jewish ancestry and confirmed none on 23andme. Wonder how old it is. Could it be from the Neolithic expansion or a Turkic incursion. Relatively lots of W Asian possible Hunnic?

Not much change from DIYDodecad 1 for my overall:
----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

23.96% East_European
40.16% West_European
25.36% Mediterranean
0.04% Neo_African
8.64% West_Asian
0.18% South_Asian
0.81% Northeast_Asian
0.06% Southeast_Asian
0.00% East_African
0.59% Southwest_Asian
0.20% Northwest_African
0.00% Palaeo_African
08-18-2011, 05:05 PM
Graham

http://i55.photobucket.com/albums/g1...tdododecad.png
http://i55.photobucket.com/albums/g1...hdodecad-1.png

Took a while to figure out
08-18-2011, 08:09 PM
Scrapple

Graham's looks exactly like the others I have seen from a pair of Englishmen and an Irishman.

My mess of a graph
http://i.imgur.com/VR5Aa.png

Edit some easier instructions:
Open up dv3.par in wordpad and change "genomewide" to "bychr" no quotes then in R enter these commands:

setwd('C:\file path to\DIYDodecad') or just File>Change Dir and locate the DIYDodecad folder

source('standardize.r')

standardize('mygenome.txt', company='23andMe')

system('DIYDodecadWin dv3.par')
08-19-2011, 09:23 AM
Frederick

Sahsons results for Dodecad:

10.75% East_European
53.80% West_European
24.27% Mediterranean
0.00% Neo_African
8.45% West_Asian
1.01% South_Asian
0.00% Northeast_Asian
0.00% Southeast_Asian
0.00% East_African
0.89% Southwest_Asian
0.76% Northwest_African
0.07% Palaeo_African

Closest Populations:
[1,] "CEU" "2.0793"
[2,] "N._European" "2.2516"
[3,] "Argyll_1KG" "2.4285"
[4,] "Orcadian" "3.0433"
[5,] "Orkney_1KG" "3.2489"
[6,] "German_D" "6.9998"
[7,] "Mixed_Germanic_D" "8.5498"
[8,] "Dutch_D" "9.9679"
[9,] "French" "12.0623"
[10,] "Kent_1KG" "12.335"
[11,] "French_D" "12.5646"
[12,] "British_Isles_D" "14.247"
[13,] "British_D" "14.3897"
[14,] "Cornwall_1KG" "15.105"
[15,] "Swedish_D" "16.9612"
[16,] "Irish_D" "17.4821"
[17,] "Norwegian_D" "17.944"
[18,] "Slovenian" "18.2588"
[19,] "Hungarians" "23.0089"
[20,] "French_Basque" "24.8459"

I check for these new tools later. ;)
08-19-2011, 03:35 PM
Peasant

I've been playing around with DIY Dodecad 2.0 and I got this.

Quote:

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

10.94% East_European
54.98% West_European
26.34% Mediterranean
0.14% Neo_African
5.55% West_Asian
0.58% South_Asian
0.09% Northeast_Asian
0.14% Southeast_Asian
0.00% East_African
0.22% Southwest_Asian
1.03% Northwest_African
0.00% Palaeo_African

Closest Populations

[1,] "CEU" "2.5034"
[2,] "Orcadian" "2.7127"
[3,] "Orkney_1KG" "2.9545"
[4,] "Argyll_1KG" "3.9244"
[5,] "N._European" "4.7437"
[6,] "German_D" "7.9408"
[7,] "Mixed_Germanic_D" "9.5955"
[8,] "Dutch_D" "9.904"
[9,] "French" "11.0081"
[10,] "French_D" "11.0099"

Mixed Mode

[1,] "91% Orkney_1KG + 9% Portuguese_D" "1.4645"
[2,] "91.7% Orkney_1KG + 8.3% Spanish_D" "1.5273"
[3,] "8.2% IBS + 91.8% Orkney_1KG" "1.5502"
[4,] "92.2% Orcadian + 7.8% Portuguese_D" "1.5656"
[5,] "91.6% Orkney_1KG + 8.4% Spaniards" "1.6446"
[6,] "92.9% Orcadian + 7.1% Spanish_D" "1.6547"
[7,] "7% IBS + 93% Orcadian" "1.6813"
[8,] "94.3% Orkney_1KG + 5.7% Sardinian" "1.6967"
[9,] "92.8% Orcadian + 7.2% Spaniards" "1.7489"
[10,] "95.3% Orcadian + 4.7% Sardinian" "1.8262"
08-20-2011, 02:09 AM
Frederick

1 Attachment(s)

Boudica

Per Chromosom results:
http://www.theapricity.com/forum/att...1&d=1313805532

Oracle admix suggestions often had an Italian component in it.
And it suggested things from

50/50 Swedish/Tuscan
to
90% CEU (White American of predominantly NOrthwest European anchestry) + 10% Southern Italian

As can be expected from the 90% CEU value, her closest populations had been "Northern European" and "CEU".

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