K9
http://i.imgur.com/jZHRJ.png
K12
http://i.imgur.com/dHPHx.png
K12b_new
http://i.imgur.com/9odWL.png
Hunter_Gatherer vs. Farmer
http://i.imgur.com/cweeb.png
Printable View
K9
http://i.imgur.com/jZHRJ.png
K12
http://i.imgur.com/dHPHx.png
K12b_new
http://i.imgur.com/9odWL.png
Hunter_Gatherer vs. Farmer
http://i.imgur.com/cweeb.png
The East Asian does appear in your Eurogenes tests. Strange that Dr. Mcdonald did not pick up any East Asian segments in his chromosome painting. Although I imagine it could have been on one of the segments that were "unreadable" in his calculator.
Sorry duplicate post lol.
22 chromosomes
Hunter Gatherer vs Farmer
http://www.theapricity.com/forum/pic...pictureid=4142
K12b_New
http://www.theapricity.com/forum/pic...pictureid=4145
K12
http://www.theapricity.com/forum/pic...pictureid=4143
edit: Sorry, I forgot to add my K9. Here it is:
http://www.theapricity.com/forum/pic...pictureid=4163
Admixture Proportions by Chromosome:
K9
http://i.imgur.com/Ec33D.png
K12
http://i.imgur.com/9IoDE.png
K12b_new
http://i.imgur.com/0qf3M.png
Hunter_Gatherer vs. Farmer
http://i.imgur.com/rqHW9.png
^ That's great, Pallantides. I'll post mine too. :)
I don't have them yet...but I will in a while...
Hunter Gatherer vs. Farmer
http://www.theapricity.com/forum/pic...pictureid=4187
~~~~~~~~~~~~~~~
K9
http://www.theapricity.com/forum/pic...pictureid=4188
~~~~~~~~~~~~~~~
K12
http://www.theapricity.com/forum/pic...pictureid=4189
~~~~~~~~~~~~~~~~
K12b_New
http://www.theapricity.com/forum/pic...pictureid=4190
~Elizabeth~
Admixture Proportions 1E-7
http://i.imgur.com/eQCBv.png
Admixture chromosome painting
http://i.imgur.com/yoP08.png
Admixture by chromosome
http://i.imgur.com/evkDZ.png
K13:
49% North European
24% Mediterranean
11% Caucasus
8% Westcentral Asian
3% Southwest Asian
2% North Eurasian
1% East Asian
K13Q:
44% Baltic
30% Mediterranean
10% North Atlantic
8% Westcentral Asian
6% Caucasian
1.5% Eastcentral Asian
0.00001% all others
K13
42.73% North European
27.03% Mediterranean
12.84% Caucasus
08.17% West Central Asian
06.00% Southwest Asian
01.68% North Eurasian
00.75% Amerindian
00.55% East Asian
00.26% Pygmy
North European 64.48%
Mediterranean 23.92%
Caucasus 6.36%
West Central Asian 1.59%
North Eurasian 1.35%
East Siberian 0.93%
East Asian 86%
West African 0.24%
Pygmy 0.17%
Northeast African 0.07%
How did you get the K13Q test?Quote:
Originally Posted by Atrox
My K=13 results, and K=13 results for two Iraqi Mandaeans:
Spoiler!
I don't where he got it from either.Quote:
Originally Posted by TheOne
There isn't a Q test at gedmatch
My K13
Eurogenes Davidski (a/k/a Polako) added a K13 to gedmatch today
http://s19.postimage.org/irjafq1ib/A...e_EUROGENE.jpg
K13 pie chart
http://s19.postimage.org/qyfvl1gyr/K...s_gedmatch.jpg
My Gedmatch K13:
North European 52.63%
West African 0%
Mediterranean 31.11%
Northeast African 0%
North Eurasian 0%
South Asian 0.89%
Southwest Asian 1.28%
Pygmy 0.59%
Caucasus 9.40%
East Siberian 0%
East Asian 0%
Amerindian 1.54%
West Central Asian 2.55%
Does anyone know how to make those RMS calculators that Roch used to do for these Gedmatch results?
Your North European is in bright red, while mine is pink. Same category.Quote:
Originally Posted by Patches
You must have your colors on intense mode, or mine are muted.
http://www.theapricity.com/forum/forumdisplay.php?f=226
link to the ABF subforum at Apricity
Siden du er moderator kan du vel åpne kontoen min, eg har vist ikke muligheter til å poste alle steder :PQuote:
Originally Posted by Pallantides
Our K13:
Mine:
Paternal aunt:Quote:
North European 62.29%
Mediterranean 26.13%
Caucasus 3.99%
West Central Asian 3.43%
South Asian 1.20%
Southwest Asian 1.20%
East Asian 1.19%
Amerindian 0.39%
West African 0.18%
Northeast African -
North Eurasian -
Pygmy -
East Siberian -
Maternal uncle:Quote:
North European 60.30%
Mediterranean 26.51%
Caucasus 6.84%
West Central Asian 2.09%
East Siberian 1.50%
Southwest Asian 1.23%
West African 0.42%
North Eurasian 0.36%
Amerindian 0.33%
East Asian 0.17%
Pygmy 0.15%
South Asian 0.11%
Northeast African -
Maternal grandmother:Quote:
North European 59.76%
Mediterranean 26.47%
Caucasus 5.62%
West Central Asian 3.37%
East Asian 1.54%
Southwest Asian 1.18%
South Asian 1.17%
North Eurasian 0.46%
Pygmy 0.39%
Northeast African -
East Siberian -
West African -
Amerindian -
I think there is allot of noise in this run, but i like that East Siberia and Amerindian is separated from North Eurasia:)Quote:
North European 60.15%
Mediterranean 25.57%
Caucasus 5.41%
West Central Asian 3.96%
Southwest Asian 2.02%
South Asian 1.63%
East Siberian 0.51%
Amerindian 0.25%
Pygmy 0.25%
North Eurasian 0.15%
Northeast African 0.08%
West African -
East Asian -
Eurogenes K13 is less accurate for me. It severely undervalues my principal components, and inflates others.
Eurogenes K9
Population
South Asian 2.7%
Caucasus 52.5%
Southwest Asian 21.4%
North Amerindian + Arctic -
Siberian 0.1%
Mediterranean 20.2%
East Asian 0.1%
West African 0.3%
North European 2.7%
Eurogenes K10
Population
South Asian 2.6%
Caucasus 51.5%
Southwest Asian 20.8%
North Amerindian + Arctic -
Siberian 0.1%
Mediterranean 20.9%
East Asian 0.1%
West African 0.3%
East European 1.2%
North Atlantic 2.6%
Eurogenes K11
Population
South Asian 2.5%
Caucasus 50.8%
Southwest Asian 20.7%
North Amerindian + Arctic -
Siberian 0.1%
Mediterranean 20.7%
East Asian 0.1%
West African 0.3%
Volga-Ural 1.9%
South Baltic 0.7%
North Atlantic 2.2%
Eurogenes K12
Population
South Asian 2.5%
Caucasus 50.3%
Southwest Asian 20.5%
North Amerindian + Arctic -
Siberian 0.1%
Mediterranean 20.8%
East Asian 0.1%
West African 0.3%
Volga-Ural 1.3%
South Baltic 0.6%
Western European 1.9%
North Sea 1.6%
Eurogenes K12b
Population
North_Atlantic 0.7%
North_Asian -
East_African 0.1%
West_Central_Asian 13.2%
South_Asian 0.2%
West_African 0.1%
Caucasus 41.6%
Finnish 0.6%
Atlantic_Mediterranean 23.2%
Southwest_Asian 19.8%
South_Baltic 0.4%
East_Asian -
Hunter_Gatherer vs. Farmer
Population
Anatolian Farmer 51.74%
Baltic Hunter Gatherer -
Middle Eastern Herder 22.84%
East Asian Farmer -
South American Hunter Gatherer -
South Asian Hunter Gatherer 2.93%
North Eurasian Hunter Gatherer -
East African Pastoralist 0.51%
Oceanian Hunter Gatherer 0.65%
Mediterranean Farmer 21.20%
Pygmy Hunter Gatherer -
Bantu Farmer 0.09%
Compare to Eurogenes K13.
Population
North European 3.50%
West African -
Mediterranean 24.95%
Northeast African 1.07%
North Eurasian -
South Asian 1.94%
Southwest Asian 12.63%
Pygmy 0.12%
Caucasus 33.30%
East Siberian 0.26%
East Asian -
Amerindian -
West Central Asian 22.23%
You look fine. You just need to compare your values to fellow Mesopotamians. You are ASY2.Quote:
Originally Posted by Casual Observer
Code:ASY1 ASY2 MAN1 MAN2
4.73% 3.50% 3.50% 2.96% North European
-0 -0 -0 -0 West African
22.97% 24.95% 23.59% 21.73% Mediterranean
0.83% 1.07% 1.07% 2.00% Northeast African
0.59% -0 -0 -0 North Eurasian
2.83% 1.94% 3.45% 3.66% South Asian
12.90% 12.63% 13.23% 15.22% Southwest Asian
-0 0.12% -0 -0 Pygmy
29.00% 33.30% 27.59% 27.00% Caucasus
-0 0.26% 0.49% -0 East Siberian
-0 -0 -0 -0 East Asian
-0 -0 0.29% 0.74% Amerindian
26.14% 22.23% 26.78% 26.69% West Central Asian
Yeah, but now I'm confused. Which is more accurate?Quote:
Originally Posted by Transhumanist
It is more about combining the results of the different runs. This requires reference to results of other individuals and populations for each run.Quote:
Originally Posted by Casual Observer
So it includes individuals who don't share our ancestry. Because this run made me feel less related to the people of the Caucasus/Anatolia. The West_Central_Asian component exponentially increased. And our Southwest Asian chopped 7 to 9%. The Northeast African was an interesting surprise. Am I officially a Black man now?Quote:
Originally Posted by Transhumanist
Eurogenes K13:
North European 35.12%
West African 0.65%
Mediterranean 34.30%
Northeast African 0%
North Eurasian 0%
South Asian 0.89%
Southwest Asian 4.93%
Pygmy 0%
Caucasus 15.32%
East Siberian 0.83%
East Asian 0%
Amerindian 0%
West Central Asian 7.96%
I feel the same.Quote:
Originally Posted by Casual Observer
http://i50.tinypic.com/2ppjy3n.jpg
Why the new "West Central Asian" component?
Is this part of previous "Caucasus"?
http://i55.photobucket.com/albums/g1...bru293/K13.png
Quote:
North European 58.77%
Mediterranean 29.78%
West Central Asian 5.15%
Caucasus 3.32%
South Asian 1.07%
Southwest Asian 0.93%
Amerindian 0.62%
West African 0.16%
East Siberian 0.08%
Northeast African -
North Eurasian -
Pygmy -
East Asian -
Here's my K13:
http://farm8.staticflickr.com/7137/7...1f51ab30_z.jpg
And my hunter vs farmer:
http://farm8.staticflickr.com/7250/7...18ecce79_z.jpg
It's interesting to note that no matter which test I run, I come up with zero African and zero Amerindian. So much for us 'admixed' old stock Americans.
This list was posted by Polako over at the biodiversity forum (ABF) :
K9
South Asian - South India
Caucasus - Georgia
Southwest Asian - Bedouin
North Amerindian + Arctic - Northwest America
Siberian - Central Siberia
Mediterranean - Sardinia
East Asian - East China
West African - Nigeria
North European - Lithuania
K10
South Asian - South India
Caucasus - Georgia
Southwest Asian - Bedouin
North Amerindian + Arctic - Northwest America
Siberian - Central Siberia
Mediterranean - Sardinia
East Asian - East China
West African - Nigeria
East European - Belarus
North Atlantic - Ireland
K11
South Asian - South India
Caucasus - Georgia
Southwest Asian - Bedouin
North Amerindian + Arctic - Northwest America
Siberian - Central Siberia
Mediterranean - Sardinia
East Asian - East China
West African - Nigeria
Volga-Ural - Western Volga
South Baltic - Lithuania
North Atlantic - Ireland
K12
South Asian - South India
Caucasus - Georgia
Southwest Asian - Bedouin
North Amerindian + Arctic - Northwest America
Siberian - Central Siberia
Mediterranean - Sardinia
East Asian - East China
West African - Nigeria
Volga-Ural - Western Volga
South Baltic - Lithuania
Western European - Western Ireland
North Sea - Southern Norway
K12b_new
Western European - Cornwall
Siberian - Central Siberia
East African - North Kenya
West Central Asian - Balochistan
South Asian - South India
West African - Nigeria
Caucasus - Georgia
Finnish - East Finland
Mediterranean - Sardinia
Southwest Asian - Bedouin
Baltic - Belarus
East Asian - East China
K13
North European - Lithuania
West Africa - Nigeria
Northeast African - Ethiopia Oromo
North Eurasian - Central Siberia
South Asian - South India
Southwest Asian - Bedouin
Pygmy - Mbuti Pygmy
Caucasus - Georgia
East Siberian - Koryaks
East Asian - East China
Amerindian - South America
West Central Asian - Balochistan
K13
Caucasus 37.66%
Mediterranean 20.40%
West Central Asian 18.41%
North European 8.75%
Southwest Asian 6.88%
North Eurasian 3.20%
East Asian 1.99%
South Asian 1.46%
Northeast African 0.98%
East Siberian 0.22%
Pygmy 0.06%
West African 0%
Amerindian 0%
http://img19.imageshack.us/img19/840/k13t.png
Well, you do have some Anatolian stuff;) Then again your level of admix is pretty normal for Euros.Quote:
Originally Posted by Allenson
The Eurogenes components maps:
http://img403.imageshack.us/img403/9593/76740091.jpg
--------------------------------------------------------------------------------
http://img29.imageshack.us/img29/9838/k10ps.jpg
-------------------------------------------------------------------------
http://img836.imageshack.us/img836/7014/k11ut.jpg
-----------------------------------------------------------------------------
http://img88.imageshack.us/img88/1156/k12je.jpg
-------------------------------------------------------------------------
http://img217.imageshack.us/img217/3914/k12bnew.jpg
--------------------------------------------------------------------------------
http://img339.imageshack.us/img339/268/k13n.jpg
---------------------------------------------------------------------------
http://img820.imageshack.us/img820/4691/hgfz.jpg
http://bga101.blogspot.com.au/2012/0...eurogenes.html
Quote:
First of all, below is a list of the geographic locations or ethnic groups in which the clusters from the Eurogenes' Gedmatch tests peak. I can't post any population averages or maps at present, but will do so as soon as possible. I really need more people to fill in their ancestry details at Gedmatch when they run these tests, otherwise producing more detailed guides won't be possible.
K9
South Asian - South India
Caucasus - Georgia
Southwest Asian - Bedouin
North Amerindian + Arctic - Northwest America
Siberian - Central Siberia
Mediterranean - Sardinia
East Asian - Eastern China
West African - Nigeria
North European - Lithuania
K10
South Asian - South India
Caucasus - Georgia
Southwest Asian - Bedouin
North Amerindian + Arctic - Northwest America
Siberian - Central Siberia
Mediterranean - Sardinia
East Asian - Eastern China
West African - Nigeria
East European - Belarus
North Atlantic - Ireland
K11
South Asian - South India
Caucasus - Georgia
Southwest Asian - Bedouin
North Amerindian + Arctic - Northwest America
Siberian - Central Siberia
Mediterranean - Sardinia
East Asian - Eastern China
West African - Nigeria
Volga-Ural - Western Volga
South Baltic - Lithuania
North Atlantic - Ireland
K12
South Asian - South India
Caucasus - Georgia
Southwest Asian - Bedouin
North Amerindian + Arctic - Northwest America
Siberian - Central Siberia
Mediterranean - Sardinia
East Asian - Eastern China
West African - Nigeria
Volga-Ural - Western Volga
South Baltic - Lithuania
Western European - Western Ireland
North Sea - Southern Norway
K12b
Western European - Cornwall
Siberian - Central Siberia
East African - Masaai
West Central Asian - Balochistan
South Asian - South India
West African - Nigeria
Caucasus - Georgia
Finnish - Eastern Finland
Mediterranean - Sardinia
Southwest Asian - Bedouin
North European - Lithuania
East Asian - Eastern China
K13
North European - Lithuania
West African - Nigeria
Northeast African - Ethiopia Oromo
North Eurasian - Central Siberia
South Asian - South India
Southwest Asian - Bedouin
Pygmy - Mbuti Pygmy
Caucasus - Georgia
East Siberian - Koryaks
East Asian - Eastern China
Amerindian - South America
West Central Asian - Balochistan
Hunter-Gatherer vs. Farmer (Gedmatch edition)
Anatolian Farmer - Western Caucasus
Baltic Hunter Gatherer - Lithuania
Middle Eastern Herder - Bedouin
East Asian Farmer - Eastern China
South American Hunter Gatherer - South America
South Asian Hunter Gatherer - South India
North Eurasian Hunter Gatherer - Central Siberia
East African Pastoralist - Masaai
Oceanian Hunter Gatherer - Papua New Guinea
Mediterranean Farmer - Sardinia
Pygmy Hunter Gatherer - Mbuti Pygmy
Bantu Farmer - West Africa
Now, the K12 test is the most useful analysis in the context of my project, which focuses on the genetic substructures of groups from north of the Alps and Carpathians. Therefore, most of this post will be dedicated to that test, and especially to the European and West Eurasian clusters it features. Indeed, below is an MDS plot showing synthetic samples made from the allele frequencies of the seven West Eurasian clusters from the K12.
http://img802.imageshack.us/img802/2...weclusters.png
It's pretty easy to see what's going on there. The four North European clusters are positioned close together on the left of the plot. However, the Western European and North Sea clusters both show significant affinity to the Mediterranean cluster, by pulling towards its direction.
Note also that the Mediterranean and Caucasus clusters are placed about half way between the South Baltic and Southwest Asian clusters across dimension one. This is in line with geography, because the Mediterranean Basin and Caucasus Mountains are located between Northern Europe and the Middle East.
However, the Mediterranean and Caucasus clusters are sharply differentiated across dimension two. This also fits geography, because there's obviously a huge distance between the populations of the Western Mediterranean (in which the Mediterranean cluster peaks) and the Caucasus.
More to come...