Eurogenes EU PCA

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08-23-2017, 12:30 PM
Karol Klačansky

Here is the PCA so far with all members of european descent. I also added my mother and my brother Lukas

https://image.ibb.co/dh4HBk/Members_PCA_Plot.png
08-23-2017, 12:47 PM
Sikeliot

SE Sicily:
# Population Percent
1 EAST_MED 27.37
2 WEST_MED 19.13
3 ATLANTIC 14.85
4 NORTH-CENTRAL_EURO 13.63
5 WEST_ASIAN 10.87
6 MIDDLE_EASTERN 7.96
7 SOUTH_BALTIC 3.42
8 WEST_AFRICAN 1.46
9 EAST_EURO 1.22
10 EAST_AFRICAN 0.09

Messina:
# Population Percent
1 EAST_MED 32.97
2 WEST_MED 17.71
3 ATLANTIC 13.31
4 WEST_ASIAN 12.52
5 MIDDLE_EASTERN 11.76
6 NORTH-CENTRAL_EURO 6.1
7 SOUTH_BALTIC 2.71
8 EAST_AFRICAN 1.52
9 EAST_EURO 1.07
10 WEST_AFRICAN 0.33

Caltanissetta:
# Population Percent
1 EAST_MED 27.63
2 WEST_MED 18.09
3 NORTH-CENTRAL_EURO 12.64
4 WEST_ASIAN 12.62
5 MIDDLE_EASTERN 12.37
6 ATLANTIC 11.47
7 EAST_EURO 2.25
8 SOUTH_BALTIC 2.23
9 WEST_AFRICAN 0.36
10 EAST_AFRICAN 0.33

Trapani:
# Population Percent
1 EAST_MED 25.88
2 WEST_MED 20.11
3 ATLANTIC 14.59
4 MIDDLE_EASTERN 11.51
5 WEST_ASIAN 10.42
6 NORTH-CENTRAL_EURO 10.33
7 SOUTH_BALTIC 4.63
8 EAST_AFRICAN 1.52
9 EAST_EURO 0.65
10 EAST_ASIAN 0.35

Palermo_2:
# Population Percent
1 EAST_MED 33.4
2 WEST_MED 16.53
3 ATLANTIC 13.51
4 MIDDLE_EASTERN 11.9
5 WEST_ASIAN 10.11
6 NORTH-CENTRAL_EURO 8.15
7 SOUTH_BALTIC 5.75
8 WEST_AFRICAN 0.43
9 EAST_AFRICAN 0.21
08-23-2017, 01:43 PM
Karol Klačansky

Quote:

Originally Posted by Sikeliot

SE Sicily:
# Population Percent
1 EAST_MED 27.37
2 WEST_MED 19.13
3 ATLANTIC 14.85
4 NORTH-CENTRAL_EURO 13.63
5 WEST_ASIAN 10.87
6 MIDDLE_EASTERN 7.96
7 SOUTH_BALTIC 3.42
8 WEST_AFRICAN 1.46
9 EAST_EURO 1.22
10 EAST_AFRICAN 0.09

Messina:
# Population Percent
1 EAST_MED 32.97
2 WEST_MED 17.71
3 ATLANTIC 13.31
4 WEST_ASIAN 12.52
5 MIDDLE_EASTERN 11.76
6 NORTH-CENTRAL_EURO 6.1
7 SOUTH_BALTIC 2.71
8 EAST_AFRICAN 1.52
9 EAST_EURO 1.07
10 WEST_AFRICAN 0.33

Caltanissetta:
# Population Percent
1 EAST_MED 27.63
2 WEST_MED 18.09
3 NORTH-CENTRAL_EURO 12.64
4 WEST_ASIAN 12.62
5 MIDDLE_EASTERN 12.37
6 ATLANTIC 11.47
7 EAST_EURO 2.25
8 SOUTH_BALTIC 2.23
9 WEST_AFRICAN 0.36
10 EAST_AFRICAN 0.33

Trapani:
# Population Percent
1 EAST_MED 25.88
2 WEST_MED 20.11
3 ATLANTIC 14.59
4 MIDDLE_EASTERN 11.51
5 WEST_ASIAN 10.42
6 NORTH-CENTRAL_EURO 10.33
7 SOUTH_BALTIC 4.63
8 EAST_AFRICAN 1.52
9 EAST_EURO 0.65
10 EAST_ASIAN 0.35

Palermo_2:
# Population Percent
1 EAST_MED 33.4
2 WEST_MED 16.53
3 ATLANTIC 13.51
4 MIDDLE_EASTERN 11.9
5 WEST_ASIAN 10.11
6 NORTH-CENTRAL_EURO 8.15
7 SOUTH_BALTIC 5.75
8 WEST_AFRICAN 0.43
9 EAST_AFRICAN 0.21

thanks for the samples, next time if you could just post their results in the order that gedmatch gives them before you click on oracle. It tripples the time it takes to put them in my pca when its in a different order!

https://image.ibb.co/j8h145/south_It...amples_PCA.png
08-23-2017, 03:22 PM
alnortedelsur

Quote:

Originally Posted by karol.klacansky

https://image.ibb.co/fC9d1k/alnort_2...ry_ALL_PCA.png

Thanks bro :cool:
08-23-2017, 04:49 PM
Ibericus

Quote:

Originally Posted by karol.klacansky

right in the iberian mix :)

https://image.ibb.co/m9wBnQ/Ibericus_PCA_EU_ALL.png

Thanks, Can you put these regional averages ? If it creates a big mess in the iberian area, you can just delete them after :

Catalan 7,39 3,56 19,25 29,06 23,55 10,88 1,65 3,79 0,27 0,36 0,09 0,05 0,11
La_Rioja 7,344 3,026 18,334 32,624 24,328 10,748 0,042 2,96 0,106 0,312 0 0 0,174
Andalusian 6,89 4,83 17,15 27,91 23,02 12,50 0,85 5,88 0,01 0,46 0,12 0,00 0,38
Aragon 7,11 3,47 18,10 29,86 24,17 11,38 0,92 4,12 0,11 0,51 0,00 0,07 0,19
French_South 8,88 4,40 22,47 27,60 21,41 10,20 2,27 2,41 0,19 0,03 0,08 0,04 0,00
08-23-2017, 04:50 PM
Kriptc06

Quote:

Originally Posted by karol.klacansky

https://image.ibb.co/mzve7Q/Penta_Dragon_PCA_ALL_EU.png

thanks mate, again I plot in the middle of Romania and Portugal... what a cool surprise, despite my non-eu
08-23-2017, 09:34 PM
Karol Klačansky

Quote:

Originally Posted by Ibericus

Thanks, Can you put these regional averages ? If it creates a big mess in the iberian area, you can just delete them after :

Catalan 7,39 3,56 19,25 29,06 23,55 10,88 1,65 3,79 0,27 0,36 0,09 0,05 0,11
La_Rioja 7,344 3,026 18,334 32,624 24,328 10,748 0,042 2,96 0,106 0,312 0 0 0,174
Andalusian 6,89 4,83 17,15 27,91 23,02 12,50 0,85 5,88 0,01 0,46 0,12 0,00 0,38
Aragon 7,11 3,47 18,10 29,86 24,17 11,38 0,92 4,12 0,11 0,51 0,00 0,07 0,19
French_South 8,88 4,40 22,47 27,60 21,41 10,20 2,27 2,41 0,19 0,03 0,08 0,04 0,00

I didnt add the La rioja sample, are there supposed to be four digits?

https://image.ibb.co/icXkGk/Iberian_PCAs.png
08-23-2017, 10:03 PM
Ibericus

Quote:

Originally Posted by karol.klacansky

I didnt add the La rioja sample, are there supposed to be four digits?

https://image.ibb.co/icXkGk/Iberian_PCAs.png

ok then like this :

La_Rioja 7,34 3,03 18,33 32,62 24,33 10,75 0,04 2,96 0,11 0,31 0,00 0,00 0,17

Thanks,
08-23-2017, 10:49 PM
Karol Klačansky

Quote:

Originally Posted by Ibericus

ok then like this :

La_Rioja7,343,0318,3332,6224,3310,750,042,960,110, 310,000,000,17

Thanks,

Ibericus that looks like one massive number [emoji23] u mean 7.34, 3.03, 18.33 etc?

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08-23-2017, 11:38 PM
Karol Klačansky

Quote:

Originally Posted by Ibericus

ok then like this :

La_Rioja 7,34 3,03 18,33 32,62 24,33 10,75 0,04 2,96 0,11 0,31 0,00 0,00 0,17

Thanks,

they are basque shifted. Interesting they made the PCA clearer a bit somehow
https://image.ibb.co/eRsSCQ/La_Rioja_PCA_EU_ALL.png

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