37!?
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37!?
This takes forever to run...
I'm computing them right now, this should be interesting.
I'm currently waiting too. I started the computation about 30 min ago and I expect it to take at least one hour more.
I'll be trying this shortly. I'll do it for myself first. Shame it would be too difficult for an oracle to be made, could have been super-accurate if there was no calculator effect.
Having problems with R again. I've used it plenty of times before (although not in a while). So I follow all the instructions, set my working directory to the right place, go source standardize r then enter the command to write a genotype file and it says theyre is no such file or directory as the one I've entered in the command (for my genotype file), but I know there is because I can see it there in the folder. I know I've had this problem multiple times before and each time I forget how it is to be fixed, anyone know?
Ok, one and a half hours later here it is :p
----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------
0.00% Amerindian
0.00% Arabian
1.41% Armenian
4.72% Basque
0.00% Central_African
5.03% Central_European
0.04% East_African
0.00% East_Asian
0.00% East_Balkan
0.00% East_Central_Asian
5.82% East_Central_Europea
0.00% East_Mediterranean
4.78% Eastern_British
0.00% Eastern_European
1.39% Finnish
6.26% French
22.42% Iberian
0.00% Indo-Chinese
16.44% Italian
0.00% Malayan
6.95% Mediterranean
2.43% Near_Eastern
5.13% North_African
0.16% North_Caucasian
1.90% North_Central_Europe
0.60% Northeast_African
0.17% Oceanian
0.15% Pygmy
0.00% Siberian
0.00% South_Asian
0.00% South_Central_Asian
0.00% South_Chinese
0.00% Volga-Ural
0.77% West_African
0.05% West_Caucasian
5.70% West_Mediterranean
7.69% Western_British
Nevermind got it working. :)
Took 65 minutes, but here it is. My grandfather's results will be ready soon.
----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------
28.97% Finnish
10.73% Western_British
9.87% Eastern_British
9.75% Eastern_European
7.80% Central_European
6.12% East_Balkan
5.87% East_Central_European
5.47% North_Central_Europe
4.39% Italian
4.22% Iberian
1.84% Basque
1.69% French
1.14% Malayan
0.77% Volga-Ural
0.54% North_Caucasian
0.24% East_Central_Asian
0.22% South_Central_Asian
0.19% Oceanian
0.07% Siberian
0.05% Indo-Chinese
0.02% West_Mediterranean
0.01% South_Asian
How do we run the Eurogenes K37 file? All I get is a file called
Eurogenes_K37_Fst which is a .txt file not a .par file...?
Just keep getting status 2. This is not the same format as all the other ones I've used..
Way too complicated for me. I'll just wait for Gedmatch.
When you unzip the downloaded file there should be and fst file (which you don't need to run this) and a directory which contains all the files you need to run it. Copy those files to the DIY directory and run it like all other runs before.Quote:
Originally Posted by Jackson
didn't you get a folder with all the files when you extracted the eurogenes_K37 zip file?Quote:
Originally Posted by Jackson
well, here's my grandfather's results.
35.59% Finnish
8.64% Eastern_British
7.62% East_Central_European
7.22% Western_British
6.76% French
5.17% Volga-Ural
5.13% Central_European
4.91% North_Central_Europe
4.88% East_Balkan
3.64% Eastern_European
3.13% Siberian
2.65% Italian
1.84% Basque
1.42% Iberian
0.56% Amerindian
0.24% Oceanian
0.22% Malayan
0.15% Pygmy
0.12% West_Mediterranean
0.08% Indo-Chinese
0.01% North_Caucasian
Ok cheers for the help Jockman and Alex Delarge. Turns out there was another layer in the folder. Had to use a different .zip opener which is confusing so I didn't see it had an extra layer. It's running now. :)
My results:
0.34% Amerindian
0.00% Arabian
0.00% Armenian
2.07% Basque
0.00% Central_African
3.63% Central_European
0.00% East_African
0.00% East_Asian
2.99% East_Balkan
0.00% East_Central_Asian
8.72% East_Central_Europea
0.00% East_Mediterranean
5.38% Eastern_British
4.59% Eastern_European
33.38% Finnish
5.68% French
5.53% Iberian
0.00% Indo-Chinese
0.58% Italian
0.00% Malayan
2.46% Mediterranean
0.00% Near_Eastern
0.00% North_African
1.39% North_Caucasian
5.67% North_Central_Europe
0.00% Northeast_African
0.32% Oceanian
0.00% Pygmy
0.00% Siberian
0.00% South_Asian
0.04% South_Central_Asian
0.00% South_Chinese
1.14% Volga-Ural
0.00% West_African
0.00% West_Caucasian
1.58% West_Mediterranean
14.51% Western_British
HOLY SHIT, this is taking for ever. I started about two or three hours ago.
Indeed. Should be called the Le Mans 37-K. :PQuote:
Originally Posted by ZephyrousMandaru
Hopefully mine will be done in about 30 mins.
First time I've seen East & West Britain split, always wanted that.
Will run it later. New Laptop, so need to download R etc..
True. I think they are based in Kent/Cornwall. Probably samples from East Anglia would be the best for East, but if you don't have them, you don't have them. Kudos to him for splitting it into so many K's too.Quote:
Originally Posted by Graham
Good!! East = more Germanic, West = more pre-Germanic.Quote:
Originally Posted by Graham
Kent/Cornwall is still a good contrast, between the Sassenachs & indigenous British.Quote:
Originally Posted by Jackson
I'm too lazy/busy and will also wait for Gedmatch. I wonder how long it will take!Quote:
Originally Posted by xajapa
Here are mine. I feel like doing the one for my paternal grandfather next. Looks like it pretty much confirms for me that what usually gets classed as Near Eastern in my genome is actually from southern Europe. Probably Italy as I had thought. Will have to run my mother and aunt's to be sure.
CPU time = 4050.95 sec
0.00% Amerindian
0.00% Arabian
0.00% Armenian
2.75% Basque
0.00% Central_African
11.32% Central_European
0.00% East_African
0.00% East_Asian
0.70% East_Balkan
0.00% East_Central_Asian
9.70% East_Central_Europea
2.06% East_Mediterranean
14.38% Eastern_British
4.40% Eastern_European
4.51% Finnish
6.16% French
8.38% Iberian
0.00% Indo-Chinese
6.06% Italian
0.00% Malayan
4.06% Mediterranean
0.01% Near_Eastern
0.00% North_African
0.00% North_Caucasian
7.39% North_Central_Europe
0.00% Northeast_African
0.00% Oceanian
0.00% Pygmy
0.00% Siberian
0.00% South_Asian
0.04% South_Central_Asian
0.00% South_Chinese
0.74% Volga-Ural
0.00% West_African
1.93% West_Caucasian
0.64% West_Mediterranean
14.76% Western_British
Where are the downloadable files ? In that blog entry of Eurogenes I don't see it..
Not as long as it would take me to figure out how to run the program!:pQuote:
Originally Posted by Loki
I'm surprised at how much Central Euro I get. Although I do usually come out as Dutch so maybe that is why. I'm slightly more Western British than Eastern British. Will be interesting to compare this to other family members as I know my Grandfather and father are the most eastern (generally) while my grandmother is the most western.
Mine and my grandmothers for now:
Mine:
17.46% Eastern_British
16.65% Finnish
16.00% Iberian
11.45% Western_British
7.98% Central_European
7.46% East_Central_Europea
6.41% North_Central_Europe
6.12% Eastern_European
5.07% French
3.27% Italian
1.63% East_Balkan
0.49% Basque
0.01% West_Mediterranean
0.00% Amerindian
0.00% Arabian
0.00% Armenian
0.00% Central_African
0.00% East_African
0.00% East_Asian
0.00% East_Central_Asian
0.00% East_Mediterranean
0.00% Indo-Chinese
0.00% Malayan
0.00% Mediterranean
0.00% Near_Eastern
0.00% North_African
0.00% North_Caucasian
0.00% Northeast_African
0.00% Oceanian
0.00% Pygmy
0.00% Siberian
0.00% South_Asian
0.00% South_Central_Asian
0.00% South_Chinese
0.00% Volga-Ural
0.00% West_African
0.00% West_Caucasian
Granny:
16.45% Eastern_British
13.91% Finnish
13.51% Iberian
10.57% East_Central_Europea
10.25% Western_British
7.96% Central_European
7.77% Eastern_European
6.60% French
5.20% North_Central_Europe
4.03% Italian
1.81% East_Balkan
1.31% Basque
0.63% South_Central_Asian
0.01% North_Caucasian
0.01% Volga-Ural
0.00% Amerindian
0.00% Arabian
0.00% Armenian
0.00% Central_African
0.00% East_African
0.00% East_Asian
0.00% East_Central_Asian
0.00% East_Mediterranean
0.00% Indo-Chinese
0.00% Malayan
0.00% Mediterranean
0.00% Near_Eastern
0.00% North_African
0.00% Northeast_African
0.00% Oceanian
0.00% Pygmy
0.00% Siberian
0.00% South_Asian
0.00% South_Chinese
0.00% West_African
0.00% West_Caucasian
0.00% West_Mediterranean
doing my uncle now..
You have a surprising amount of Finnish and Iberian. I'd have expected me to get more Iberian, and less North Central Euro. Interesting but surprising.Quote:
Originally Posted by evon
Tomorrow I'll do comparative tables between members different ancestral clusters of Apricity members.
Lets see what Palla gets...Quote:
Originally Posted by Jackson
Yeah would be interesting, he is East Norwegian?Quote:
Originally Posted by evon
Yes, i think he will be more like the Swedish posters, having low Iberian values...All my family is Western Norwegian, although we are cousins, he has mostly Eastern Norwegian Ancestry.Quote:
Originally Posted by Jackson
Will be interesting to see. Actually I guess you could get a reasonable idea of what is normal for Western Norwegians from your own family, as you have tested quite a few of them?Quote:
Originally Posted by evon
I would expect my grandmother to get quite high Iberian and Western British Values, i'll run hers after my grandfather's.
I have tested 4 of us, me, my maternal uncle, grandmother and also my paternal aunt. I expect my aunt to be most Iberian and my uncle to be most Finnish...My Aunt actually has allot of Spanish cousins and a big 7.9cM Portuguese match among others, so its possible she has Iberian ancestry aside from her German ancestry..Quote:
Originally Posted by Jackson
There should be a clear visible difference between Eastern and Western Norway as there usually is on these tests...
jeez overclock your darn CPUs folks :p
Paternal Grandfather: Interesting that he gets more Italian than me. Also he has almost 1% South Asian, this shows up on calculators but I never considered it might actually be real, as most Brits seem to get a bit of it...
0.00% Amerindian
0.00% Arabian
0.00% Armenian
2.11% Basque
0.00% Central_African
9.54% Central_European
0.00% East_African
0.00% East_Asian
1.39% East_Balkan
0.00% East_Central_Asian
11.30% East_Central_Europea
0.00% East_Mediterranean
15.05% Eastern_British
2.30% Eastern_European
7.28% Finnish
6.98% French
11.65% Iberian
0.00% Indo-Chinese
7.89% Italian
0.00% Malayan
0.02% Mediterranean
0.04% Near_Eastern
0.00% North_African
0.00% North_Caucasian
7.46% North_Central_Europe
0.00% Northeast_African
0.00% Oceanian
0.00% Pygmy
0.00% Siberian
0.00% South_Asian
0.96% South_Central_Asian
0.00% South_Chinese
0.72% Volga-Ural
0.00% West_African
0.00% West_Caucasian
0.01% West_Mediterranean
15.32% Western_British
Uncle:Quote:
Originally Posted by evon
20.02% Finnish
15.34% Eastern_British
14.64% Western_British
14.41% Iberian
7.43% North_Central_Europe
6.33% Central_European
5.29% Eastern_European
5.05% French
4.70% East_Central_Europea
2.11% East_Balkan
1.07% Italian
0.95% West_Mediterranean
0.86% Basque
0.86% West_Caucasian
0.73% Volga-Ural
0.19% South_Central_Asian
0.01% Oceanian
0.00% Amerindian
0.00% Arabian
0.00% Armenian
0.00% Central_African
0.00% East_African
0.00% East_Asian
0.00% East_Central_Asian
0.00% East_Mediterranean
0.00% Indo-Chinese
0.00% Malayan
0.00% Mediterranean
0.00% Near_Eastern
0.00% North_African
0.00% North_Caucasian
0.00% Northeast_African
0.00% Pygmy
0.00% Siberian
0.00% South_Asian
0.00% South_Chinese
0.00% West_African
My nerdy heart is happy, I'm going to run it right now. :D:D:DQuote:
Originally Posted by evon
Just be patient, it takes awhile...i am curious if you will beat my Iberian score :rolleyes:Quote:
Originally Posted by Atlantic Islander