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Thread: Tutorial for autosomal calculators

  1. #11
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    Quote Originally Posted by Zuvaq View Post
    Is it possible to run gedmatch kit numbers in calculators outside gedmatch?
    No, you need the raw datas, gedmatch numbers are just numbers tied to people's genomes in their database.

    Quote Originally Posted by Dibran View Post
    error message after entering the following

    standardize('f.txt', company='23andMe')

    ERROR: could not find function "standardize"



    Standardize.r is in the folder? What am I doing wrong? K11 folder is in C as instructed??
    I don't know if it's your error but you should run source('standardize.r') first and getting a new prompt, then standardize('f.txt', company='23andMe')


    While f.txt has to be replaced by the actual name of your genome like Dibran16022017.txt

  2. #12
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    Quote Originally Posted by Zuvaq View Post
    Is it possible to run gedmatch kit numbers in calculators outside gedmatch?
    well, this thread actually does not exist


  3. #13
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    does it work with raw data from Ancestry?

  4. #14
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    Very nice explanation, thank you very much!

  5. #15
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    im trying to do this for a new calculator and im getting really mad because I cant get it to work, I have followed all the steps and I get no damn results

  6. #16
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    These calculators are boring. The only thjng Im still interested is about haplogroups for genetics

  7. #17
    乁 了 ' ' ◠ Lemgrant's Avatar
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    How to make 3D PCA in RStudio and perform hierarchical k-means clustering
    https://youtu.be/_lZ_EqV-cZw


    Eurogenes K13 datasheet: https://drive.google.com/file/d/1cDv...fwoAHewJ6/view

    Script:
    Spoiler!


    __________________________________________

    and

    How to make custom oracle in RStudio (Gedmatch, G25...)

    https://www.youtube.com/watch?v=cFpBinU5E18


    Algorithm: https://docs.google.com/document/d/1...gAZMCzx8A/edit

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    Quote Originally Posted by Lemgrant View Post
    +

    How to make 3D PCA in RStudio and perform hierarchical k-means clustering
    https://youtu.be/_lZ_EqV-cZw


    Eurogenes K13 datasheet: https://drive.google.com/file/d/1cDv...fwoAHewJ6/view

    Script:
    Spoiler!


    __________________________________________

    and

    How to make custom oracle in RStudio (Gedmatch, G25...)

    https://www.youtube.com/watch?v=cFpBinU5E18


    Algorithm: https://docs.google.com/document/d/1...gAZMCzx8A/edit
    Did you know that MyTrueAncestry used your tutorial to make their 3d plot lol?

  9. #19
    乁 了 ' ' ◠ Lemgrant's Avatar
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    Quote Originally Posted by Lukasz View Post
    Did you know that MyTrueAncestry used your tutorial to make their 3d plot lol?
    They have 3d plots? I saw only 2d pca. I made this so that everyone could make a 3d pca, since RStudio is a free software.
    https://www.rstudio.com/products/rstudio/download/

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    Quote Originally Posted by Lemgrant View Post
    +

    How to make 3D PCA in RStudio and perform hierarchical k-means clustering
    https://youtu.be/_lZ_EqV-cZw


    Eurogenes K13 datasheet: https://drive.google.com/file/d/1cDv...fwoAHewJ6/view

    Script:
    Spoiler!


    __________________________________________

    and

    How to make custom oracle in RStudio (Gedmatch, G25...)

    https://www.youtube.com/watch?v=cFpBinU5E18


    Algorithm: https://docs.google.com/document/d/1...gAZMCzx8A/edit
    thanks so much .... btw I like giordano bruno too c;

    I never try R or any data analysis before.... I didn't have any project on mind ... until now ....

    I'm autodidact but can you ask you about ... nmonte or how I can create my costume G25 from raw files ?

    I mean I just need some inside about how to translate data into coordinates ... I saw in other post about normalize data...

    I want to made coordinates of my chromosomes... where can I start to do so ? Dx

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