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Thread: (Unofficial) oracle for Eurogenes K36 - 256 reference populations

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    Veteran Member LukaszM's Avatar
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    Default (Unofficial) oracle for Eurogenes K36 - 256 reference populations

    More details here: http://k36.physical-anthropology.info/

    Why oracle for K36? Because this Gedmatch calculator is one of the most interesting but its component breakdown is not very intelligible for most of the users. We don’t have any comparison or reliable benchmarks without oracle.

    Of course I didn’t use original Polako's reference samples in the averages (except some East-Asian & SSA populations). And I did this hard work (with help from other people) to test as many Gedmatch kits for K36 oracle as possible to make reference samples.
    Oracle is still in beta stage but I’ve decided to publish it because maybe it encourages people to cooperate in oracle’s development. And many people ask me or Tomenable in last days about running oracle for them
    Still some regions are not well represented (just few kits) or not represented at all. For now there are 256 reference populations included in datafile.

    Download oracle files

    or https://drive.google.com/open?id=0B4...nNGeHRqZ2g1eU0


    Short instruction:

    – Double click of the 4 Ancestors Oracle (Admix4_097.exe).

    Select k36_v1.txt_commas (at first start, you will be in default windows folder, you must find this one where are oracle files). Don't bother that oracle wants MDLP file

    – enter your Eurogenes K36 ancestry proportions into the fields provided (at first start there are “2,777” everywhere). Also don’t use “-“, use “0” instead. Use commas (for example 0,94).
    If you have crashes start oracle again and select k36_v1_dots.txt and fill in your results using "." like 0.94


    – Hit the go button and wait; it takes some time for Gaussian method (especially for 4 populations aproximation) to end. You will see black window with calculations. After one or two minutes it will disappear (you can delete processing file at any time). What was calculated will be saved in output.txt file. It’s possible to launch next run with other K36 results when previous is still running. The result will be saved in output2.txt and so on
    .


    I must thank many people who contributed to the oracle. Especially user Litvin, co-author of the oracle who prepared large collection of Polish, Czech-Moravians and Albanian GEDMATCH kits. Also he made Amerindian, Samoan, Mollukan, Basque, NW-German averages, and sent many single kits for various populations (some Jews, Austrians, Dutch,Scots, Latinos, Frenchmen, Scandos, Baltics, Abo Australian). Also those users contributed a lot: Sikeliot (Sicilia and Greece) , Percivalle (Italy, Corsica), PunhetaDeBacalhau (Iberia, some other countries), karol.klacansky (Rusyns), Deniz (Bulgarian Tursk, some Balkan kits), Dick (Balkan kits), Tolan from Anthrogenica (French averages), Ibericus (some French), Feichy (Croat) and many others who sent single kits.

    Also for East Europe and North-East Europe, Siberia and Caucasus I use mostly samples from spreadsheet availabe at Verenich Blog. Some of them I updated (Poland, Azeri, Bulgaria, Macedonia, Kosovo) or I added some regions like West Belarus, Central Ukraine, Georgia Imereti etc.

    I also made frequency maps for most popular or interesting components. Later I’ll add more maps.

    Info: for modern Western and Northern Poland I use PL_average sample. For most of the Spain I use Spain-Average sample. For south Siberia I use Siberian Tatars only. For some marked regions I don't have data but maybe it will change soon.

    populations averages. Click here.


    East-Central Euro component


    Central Euro component




    Eastern Euro component


    East-Balkan component


    North Sea component


    North Atlantic component


    Italian component


    East-Med component


    North Caucasian component


    Fennoscandian component


    Siberian component
    Last edited by LukaszM; 04-23-2017 at 06:51 PM.

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    Senior Member PunhetaDeBacalhau's Avatar
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    Amazing work guys

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    Veteran Member LukaszM's Avatar
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    Later Litvin will add other maps.

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    Banned Dr. Robotnik the Subbotnik's Avatar
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    i don't see a big red number 4 anywhere :s


    ---------

    edit, i found it but when i click it, only option i am given is mdlp w22 :s

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    Veteran Member LukaszM's Avatar
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    Quote Originally Posted by Hoppean snek View Post
    i don't see a big red number 4 anywhere :s


    ---------

    edit, i found it but when i click it, nothing happens :s
    You selected k36_v1.txt after clicling Admix4_097.exe? At first start, you will be in default windows folder, you must find this one where are oracle files.

    I

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    This is GREAT ! Well done and I'm specially happy to see you have taken into account Normandy there Very interesting to learn from these maps, thank you !

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    Quote Originally Posted by mlukas View Post
    You selected k36_v1.txt after clicling Admix4_097.exe?

    I don't know also how it works on linux or Mac for example.
    okay, when i click it only option i am given is mdlp w22.

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    Banned Dr. Robotnik the Subbotnik's Avatar
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    okay nvm i got it

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    Quote Originally Posted by Hoppean snek View Post
    okay nvm i got it
    You must find k36_v1.txt file n reelvant folder where it is placed wit oracle files. MDLP is by default only. I can't change it

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    gah, everything goes right until i click go, then a black thing comes up but then it immediately crashes. help plz? :c

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