MDLP K23b

[Jusarius]

It seems we are being bombarded with new calculators once a week now. I don't complain. Today Vadim released the beta files of his new calculator, K23. It should be more accurate than the previous ones as he has now taken into account the calculator effect.

Here are my results:

51.32% European_Hunter_Gatherer
19.05% Caucasian
-----------------------------------------
8.43% European_Early_Farmer
7.66% Ancestral-North-Eurasian
6.15% East-Siberian
1.55% Ancestral-North-Indian
1.55% Ancestral-South-Indian
-----------------------------------------
0.83% Paleo-Siberian
0.81% North-African
0.60% Amerindian
0.58% Austronesian
0.58% Altai
0.21% Near-East
0.18% Melano-Polinesian
0.16% Austroloid
0.16% South-East-Asian
0.15% Arctic
0.01% East-African
0.01% African-Pygmy
0.00% Archaic-Human
0.00% Khoisan
0.00% Archaic-African
0.00% Subsaharian
�

[1,] "Finn-East" "0"
[2,] "Finnish_FIN" "2.1301"
[3,] "Finn" "2.4485"
[4,] "Karelian" "5.3065"
[5,] "Vepsa" "6.8242"
[6,] "Finn-West" "7.0356"
[7,] "North-Russian" "7.6479"
[8,] "Russian" "8.1229"
[9,] "Tatar" "8.8929"
[10,] "Kryashen" "8.9958"

[1,] "Finn-East" "0"
[2,] "95.8% Finnish_FIN + 4.2% Udmurd" "1.6848"
[3,] "97.5% Finnish_FIN + 2.5% Mansi" "1.6884"
[4,] "97.9% Finnish_FIN + 2.1% Hant" "1.6971"
[5,] "5.4% Bashkir + 94.6% Finnish_FIN" "1.7182"
[6,] "97.8% Finnish_FIN + 2.2% Ket" "1.7215"
[7,] "97.8% Finnish_FIN + 2.2% Kets" "1.7351"
[8,] "94.7% Finnish_FIN + 5.3% Maris" "1.7385"
[9,] "97.9% Finnish_FIN + 2.1% Selkup" "1.7512"
[10,] "93.5% Finnish_FIN + 6.5% Saami" "1.7712"


It would be interesting to see other people's results, so post yours here!

The files can be found here: https://docs.google.com/file/d/0B6n7...YwSWRlMnM/edit

[Thrax]

38.29% Caucasian
22.78% European_Early_Farme
19.31% European_Hunters_Gat

6.91% Near-East
5.40% Ancestral-North-Indi
2.89% North-African
1.30% Ancestral-North-Eura

0.72% Arctic
0.52% Ancestral-South-Indi
0.35% Melano-Polinesian
0.31% East-Siberian
0.30% Paleo-Siberian
0.18% Altai�
0.18% Austroloid
0.14% Austronesian
0.13% Amerindian
0.10% South-East-Asian
0.08% African-Pygmy
0.07% Archaic-Human
0.03% East-African
0.02% Subsaharian
0.01% Khoisan
0.00% Archaic-African

Oracle results:
[1,] "Greek_Comas" "2.1857"
[2,] "Central-Greek" "2.8169"
[3,] "Greek" "3.3506"
[4,] "Albanian" "3.6357"
[5,] "Kosovar" "4.2144"
[6,] "South_Greek" "4.8416"
[7,] "Greek_WGA" "4.9159"
[8,] "North_Greek" "5.0403"
[9,] "Bulgarian" "5.3895"
[10,] "Romanian_Jews" "5.4518"

What the heck is "Greek_Comas"?

[Alessio]

All though I gave him the rawdata file from my mum as well as some other Dutch who have a paper trail to proof it, my mum wasn't used. I'm checking the other ones I gave him now to see if he used those because the results are better than any other calculator now for my mum.

---------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------
39.34% European_Hunters_Gat
25.15% European_Early_Farmer
21.10% Caucasian
7.25% Ancestral-North-Indi
5.25% Ancestral-North-Eura
0.63% North-African
0.34% Near-East
0.28% Amerindian
0.23% Arctic
0.10% Paleo-Siberian
0.08% Ancestral-South-Indi
0.07% Austroloid
0.06% East-Siberian
0.05% Melano-Polinesian
0.02% East-African
0.02% South-East-Asian
0.01% Austronesian
0.01% Altai�
0.00% Archaic-Human
0.00% Khoisan
0.00% Archaic-African
0.00% African-Pygmy

0.00% Subsaharian



CPU time = 57.39 sec


[1,] "Dutch" "1.5498"
[2,] "English" "3.4662"
[3,] "Swede" "4.1154"
[4,] "North_German" "4.3149"
[5,] "Belgian" "4.4263"
[6,] "Mixed_European" "4.5138"
[7,] "N._European" "4.6827"
[8,] "Icelandic" "5.2775"
[9,] "Norwegian" "5.2792"
[10,] "South-German" "5.4244"
[11,] "Swedish" "5.9983"
[12,] "CEU" "6.33"
[13,] "Mixed_German" "6.5878"
[14,] "English_Cornwall_GBR" "6.7667"
[15,] "English_Kent_GBR" "6.773"
[16,] "Scottish_Argyll_Bute_GBR" "6.873"
[17,] "Welsh" "7.278"
[18,] "Orcadian" "8.061"
[19,] "Germans" "8.4703"
[20,] "Austrian" "8.9061"
[21,] "United-Kingdom" "9.4716"
[22,] "Mixed_CEU" "9.7308"
[23,] "German" "11.4971"

[1,] "9.2% Georgian_Imereti + 90.8% Norwegian" "0.7665"
[2,] "9.3% Georgian_WGA + 90.7% Norwegian" "0.7746"
[3,] "9.4% Georgian_Megrels + 90.6% Norwegian" "0.7841"
[4,] "90.6% Norwegian + 9.4% Svan" "0.8234"
[5,] "9.6% Megrel + 90.4% Norwegian" "0.8248"
[6,] "9.2% Georgian_Laz + 90.8% Icelandic" "0.8268"
[7,] "91% Icelandic + 9% Laz" "0.8303"
[8,] "9.2% Georgian_WGA + 90.8% Icelandic" "0.8407"
[9,] "9.7% Abkhasian + 90.3% Norwegian" "0.8709"
[10,] "84.3% Dutch + 15.7% Scottish_Argyll_Bute_GBR" "0.8898"
[11,] "9.1% Georgian_Imereti + 90.9% Icelandic" "0.9047"
[12,] "9.7% Georgian + 90.3% Norwegian" "0.9095"
[13,] "9.6% British + 90.4% Dutch" "0.9215"
[14,] "9.5% Adjara + 90.5% Norwegian" "0.9365"
[15,] "9.4% Georgian_Megrels + 90.6% Icelandic" "0.9602"
[16,] "9% Laz + 91% Norwegian" "0.9616"
[17,] "90.6% Icelandic + 9.4% Svan" "0.9727"
[18,] "9.1% Georgian_Laz + 90.9% Norwegian" "0.9874"
[19,] "87.3% Dutch + 12.7% Orcadian" "1.0215"
[20,] "81.7% Dutch + 18.3% Icelandic" "1.0286"
[21,] "90.5% Icelandic + 9.5% Megrel" "1.0384"
[22,] "82.3% Dutch + 17.7% Norwegian" "1.0783"
[23,] "11.5% Balkar + 88.5% Norwegian" "1.0927"

[Alessio]

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

30.36% Caucasian
27.75% European_Early_Farme
23.59% European_Hunters_Gat
7.10% Ancestral-North-Indi
4.60% Near-East
2.90% North-African
2.61% Ancestral-North-Eura
----------------------------------------------------------------------------------------------------------------------------------
0.17% Arctic
0.17% Ancestral-South-Indi
0.16% East-African
0.13% Paleo-Siberian
0.10% Austronesian
0.07% East-Siberian
0.07% Altai�
0.06% Amerindian
0.04% Austroloid
0.05% South-East-Asian
0.05% Melano-Polinesian
0.03% African-Pygmy
0.01% Khoisan
0.01% Subsaharian
0.00% Archaic-Human
0.00% Archaic-African




[1,] "Italian_Tuscan" "6.76"
[2,] "South-German" "7.6938"
[3,] "Italian_Abruzzo" "7.8611"
[4,] "Italian_Piedmont" "7.9454"
[5,] "Italian_WestSicilian" "7.9504"
[6,] "Kosovar" "7.9636"
[7,] "Austrian" "9.2101"
[8,] "Mixed_European" "9.9378"
[9,] "Belgian" "10.1756"
[10,] "Dutch" "10.2441"
[11,] "Bulgarian" "10.4172"
[12,] "Montenegrian" "10.4242"
[13,] "North_German" "10.4351"
[14,] "English" "10.6967"
[15,] "Maltese" "10.7529"
[16,] "Italian_Bergamo" "10.8315"
[17,] "Germans" "10.8718"
[18,] "Italian_EastSicilian" "11.1055"
[19,] "Greek_Comas" "11.1896"
[20,] "Ashkenazi_Jew" "11.3483"

[1,] "40.4% Azov_Greek + 59.6% Occitan" "1.418"
[2,] "41.2% Azov_Greek + 58.8% French" "1.5509"
[3,] "43.1% British + 56.9% Greek_WGA" "1.6935"
[4,] "44.4% British + 55.6% Italian_South" "1.8798" almost right on
[5,] "47.9% Greek_WGA + 52.1% Welsh" "1.9827"
[6,] "43.6% Greek-Islands + 56.4% Welsh" "1.9891"
[7,] "46.5% Italian_South + 53.5% Welsh" "2.0493"
[8,] "72.3% French + 27.7% Turkish_Trabzon" "2.0761"
[9,] "43.9% Greek_Coriell + 56.1% Welsh" "2.1066"
[10,] "51.3% Azov_Greek + 48.7% Spanish_Cataluna_IBS" "2.1526"
[11,] "39.6% Mixed_East_European + 60.4% Spanish_Baleares_IBS" "2.1623"
[12,] "38.5% British + 61.5% Central-Greek" "2.173"
[13,] "49.6% Mixed_East_European + 50.4% Spanish_Andalucia_IBS" "2.1856"
[14,] "29.3% Assyrian_WGA + 70.7% French" "2.1922"
[15,] "57.7% Spanish_Baleares_IBS + 42.3% Turkish_Istanbul" "2.2124" how can this even be an option ??
[16,] "57.2% English_Cornwall_GBR + 42.8% Greek-Islands" "2.2133"
[17,] "51.1% Azov_Greek + 48.9% Spanish_Galicia_IBS" "2.2156"
[18,] "43% Dutch + 57% Italian_Abruzzo" "2.2172"
[19,] "48.9% Azov_Greek + 51.1% Spaniards" "2.2231"
[20,] "30.1% Armenian + 69.9% French" "2.2388"
[21,] "44.8% Mixed_East_European + 55.2% Spaniards" "2.2498"
[22,] "54.3% English_Cornwall_GBR + 45.7% Italian_South" "2.2773"
[23,] "49.5% Italian_South + 50.5% Scottish_Argyll_Bute_GBR" "2.3006"

[Damião de Góis]

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

0.06% Amerindian
1.70% Ancestral-North-Eura
4.77% Ancestral-North-Indi
0.01% Arctic
0.19% Ancestral-South-Indi
0.66% Austroloid
0.02% Austronesian
23.24% Caucasian
0.16% Archaic-Human
1.07% East-African
0.01% East-Siberian
32.00% European_Early_Farme
0.21% Khoisan
0.26% Melano-Polinesian
0.34% Archaic-African
3.88% Near-East
7.22% North-African
0.02% Paleo-Siberian
0.28% African-Pygmy
0.01% South-East-Asian
0.65% Subsaharian
0.01% Altai�
23.22% European_Hunters_Gat

CPU time = 56.46 sec

Hum... not sure about the 23% caucasian. First time i ever score that number.

[Jackson]

Here are my results, can anyone remind me what the R command is for the oracle and oracle mixed modes? Cheers!

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

0.21% Amerindian
4.57% Ancestral-North-Eura
6.14% Ancestral-North-Indi
0.04% Arctic
0.28% Ancestral-South-Indi
0.07% Austroloid
0.03% Austronesian
19.52% Caucasian
0.00% Archaic-Human
0.04% East-African
0.05% East-Siberian
26.73% European_Early_Farme
0.06% Khoisan
0.07% Melano-Polinesian
0.07% Archaic-African
2.48% Near-East
2.66% North-African
0.03% Paleo-Siberian
0.07% African-Pygmy
0.02% South-East-Asian
0.08% Subsaharian
0.02% Altai�
36.77% European_Hunters_Gat

CPU time = 69.00 sec
>

[Alessio]

A woman with all 4 grandparents from Groningen (The Netherlands):

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

0.31% Amerindian
4.93% Ancestral-North-Eura
4.84% Ancestral-North-Indi
0.09% Arctic
0.26% Ancestral-South-Indi
0.14% Austroloid
0.05% Austronesian
20.42% Caucasian
0.01% Archaic-Human
0.06% East-African
0.07% East-Siberian
24.61% European_Early_Farme
0.00% Khoisan
0.03% Melano-Polinesian
0.00% Archaic-African
0.29% Near-East
1.77% North-African
0.03% Paleo-Siberian
0.14% African-Pygmy
0.08% South-East-Asian
0.01% Subsaharian
0.07% Altai�
41.79% European_Hunters_Gat

[1,] "Swede" "2.4216"
[2,] "Dutch" "2.4229"
[3,] "North_German" "3.4546"
[4,] "Mixed_European" "3.5361"
[5,] "English" "3.8113"
[6,] "Belgian" "4.1694"
[7,] "N._European" "4.4743"
[8,] "Swedish" "4.5383"
[9,] "South-German" "5.0423"
[10,] "Norwegian" "5.2352"
[11,] "Icelandic" "5.2674"
[12,] "Mixed_German" "6.1499"
[13,] "CEU" "6.6419"
[14,] "English_Kent_GBR" "6.8965"
[15,] "Germans" "7.1219"
[16,] "English_Cornwall_GBR" "7.2545"
[17,] "Scottish_Argyll_Bute_GBR" "7.623"
[18,] "Welsh" "7.733"
[19,] "Austrian" "8.1151"
[20,] "Orcadian" "8.4977"
[21,] "United-Kingdom" "8.849"
[22,] "Mixed_CEU" "8.9458"
[23,] "German" "10.5858"

[1,] "74.3% English_Cornwall_GBR + 25.7% Estonian" "1.172"
[2,] "75.7% English + 24.3% Finn-West" "1.1767"
[3,] "15.7% Mordovian + 84.3% N._European" "1.1797"
[4,] "74.9% English_Cornwall_GBR + 25.1% Latvian" "1.1954"
[5,] "77.7% English_Cornwall_GBR + 22.3% Kuban_cossack" "1.2586"
[6,] "16.4% Mordovians + 83.6% N._European" "1.2771"
[7,] "16.7% Latvian + 83.3% N._European" "1.2836"
[8,] "79.2% CEU + 20.8% Kuban_cossack" "1.2965"
[9,] "84% N._European + 16% Russian" "1.3084"
[10,] "17.1% Estonian + 82.9% N._European" "1.3122"
[11,] "33.9% Belgian + 66.1% Swede" "1.3264"
[12,] "36.1% English + 63.9% Swede" "1.3385"
[13,] "54.9% English + 45.1% Swedish" "1.3394"
[14,] "76.2% English_Cornwall_GBR + 23.8% Lithuanian" "1.3721"
[15,] "79.5% Norwegian + 20.5% Russian_South" "1.3741"
[16,] "31.4% Hungarian_Coriell + 68.6% Norwegian" "1.3933"
[17,] "84.9% N._European + 15.1% Russian-South" "1.3944"
[18,] "39% Icelandic + 61% Mixed_European" "1.4009"
[19,] "60.9% Mixed_European + 39.1% Norwegian" "1.4091"
[20,] "84.5% N._European + 15.5% Russian-Center" "1.4183"
[21,] "85.4% English + 14.6% Estonian" "1.4192"
[22,] "50% Dutch + 50% Swede" "1.4221"

[Alessio]

system('DIYDodecadWin test.par')

TOracle(c(X), k=23)

Here are my results, can anyone remind me what the R command is for the oracle and oracle mixed modes? Cheers!

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

0.21% Amerindian
4.57% Ancestral-North-Eura
6.14% Ancestral-North-Indi
0.04% Arctic
0.28% Ancestral-South-Indi
0.07% Austroloid
0.03% Austronesian
19.52% Caucasian
0.00% Archaic-Human
0.04% East-African
0.05% East-Siberian
26.73% European_Early_Farme
0.06% Khoisan
0.07% Melano-Polinesian
0.07% Archaic-African
2.48% Near-East
2.66% North-African
0.03% Paleo-Siberian
0.07% African-Pygmy
0.02% South-East-Asian
0.08% Subsaharian
0.02% Altai�
36.77% European_Hunters_Gat

CPU time = 69.00 sec
>

[Jackson]

system('DIYDodecadWin test.par')

TOracle(c(X), k=23)

Cheers.

And mixedmode is TOracle(c(X), mixedmode=T, k=23) i think?

[Alessio]

Another Dutch person (mix of Frisian, Gronings and a bit North Dutch)

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

0.01% Amerindian
5.33% Ancestral-North-Eura
6.63% Ancestral-North-Indi
0.04% Arctic
0.16% Ancestral-South-Indi
0.06% Austroloid
0.06% Austronesian
20.23% Caucasian
0.01% Archaic-Human
0.09% East-African
0.07% East-Siberian
24.99% European_Early_Farme
0.01% Khoisan
0.03% Melano-Polinesian
0.02% Archaic-African
0.64% Near-East
1.29% North-African
0.02% Paleo-Siberian
0.20% African-Pygmy
0.02% South-East-Asian
0.03% Subsaharian
0.04% Altai�
40.04% European_Hunters_Gat


[1,] "Dutch" "1.9529"
[2,] "English" "3.2577"
[3,] "Swede" "3.3127"
[4,] "N._European" "4.2194"
[5,] "North_German" "4.2523"
[6,] "Belgian" "4.3843"
[7,] "Mixed_European" "4.4872"
[8,] "Icelandic" "4.5273"
[9,] "Norwegian" "4.5807"
[10,] "Swedish" "5.3141"
[11,] "South-German" "5.6224"
[12,] "CEU" "6.0564"
[13,] "Mixed_German" "6.2022"
[14,] "Scottish_Argyll_Bute_GBR" "6.5753"
[15,] "English_Cornwall_GBR" "6.6553"
[16,] "English_Kent_GBR" "6.6574"
[17,] "Welsh" "7.1003"
[18,] "Orcadian" "7.6676"
[19,] "Germans" "8.2711"
[20,] "Austrian" "9.0146"
[21,] "United-Kingdom" "9.1862"
[22,] "Mixed_CEU" "9.7049"
[23,] "British" "11.4044"

[1,] "70.8% Dutch + 29.2% Icelandic" "0.622"
[2,] "71.8% Dutch + 28.2% Norwegian" "0.817"
[3,] "13.8% Mixed_East_European + 86.2% Norwegian" "0.8363"
[4,] "86.4% Icelandic + 13.6% Mixed_East_European" "0.9129"
[5,] "7.8% Georgian_Laz + 92.2% Icelandic" "0.9477"
[6,] "92.3% Icelandic + 7.7% Laz" "0.9684"
[7,] "7.8% Georgian_WGA + 92.2% Icelandic" "0.9995"
[8,] "12.6% British + 87.4% Dutch" "1.0616"
[9,] "10.2% Circassians + 89.8% Norwegian" "1.0868"
[10,] "80.2% Dutch + 19.8% Scottish_Argyll_Bute_GBR" "1.1141"
[11,] "8% Adjara + 92% Icelandic" "1.1414"
[12,] "82.8% Dutch + 17.2% Orcadian" "1.1474"
[13,] "92.1% Icelandic + 7.9% Svan" "1.1557"
[14,] "7.9% Georgian_WGA + 92.1% Norwegian" "1.1584"
[15,] "91.9% Icelandic + 8.1% Megrel" "1.1597"
[16,] "8.1% Adjara + 91.9% Norwegian" "1.1624"
[17,] "7.7% Georgian_Imereti + 92.3% Icelandic" "1.1658"
[18,] "7.9% Georgian_Megrels + 92.1% Icelandic" "1.1728"
[19,] "74% Scottish_Argyll_Bute_GBR + 26% Ukrainian_West" "1.1747"
[20,] "91% Icelandic + 9% Turkish_Trabzon" "1.1777"
[21,] "9.9% Balkar + 90.1% Norwegian" "1.1825"
[22,] "10.1% Circassians + 89.9% Icelandic" "1.1877"
[23,] "8.1% Megrel + 91.9% Norwegian" "1.1984"