2
While this conclusion was something more or less reachable with previous data (see HERE for example), a new study adds some fine detail for us to reconstruct the paleohistory of this major Eurasian lineage.
Peter A. Underhill et al., The phylogenetic and geographic structure of Y-chromosome haplogroup R1a. EJHG 2014.
"R1a-M420 is one of the most widely spread Y-chromosome haplogroups; however, its substructure within Europe and Asia has remained poorly characterized. Using a panel of 16 244 male subjects from 126 populations sampled across Eurasia, we identified 2923 R1a-M420 Y-chromosomes and analyzed them to a highly granular phylogeographic resolution. Whole Y-chromosome sequence analysis of eight R1a and five R1b individuals suggests a divergence time of ~25 000 (95% CI: 21 300–29 000) years ago and a coalescence time within R1a-M417 of ~5800 (95% CI: 4800–6800) years. The spatial frequency distributions of R1a sub-haplogroups conclusively indicate two major groups, one found primarily in Europe and the other confined to Central and South Asia. Beyond the major European versus Asian dichotomy, we describe several younger sub-haplogroups. Based on spatial distributions and diversity patterns within the R1a-M420 clade, particularly rare basal branches detected primarily within Iran and eastern Turkey, we conclude that the initial episodes of haplogroup R1a diversification likely occurred in the vicinity of present-day Iran."
This case, as well as many others, including that of its close relatives R1b and Q, illustrate why frequency is not the same as origin, which can only be inferred (if at all) by studying the hierarchical diversity of the lineage. These three lineages for example, must have spread from West Asia but they are relatively less important in numbers in that region today, overshadowed by other lineages, notably J. Instead their derived branches had major impacts in other regions (Europe, South and Central Asia, Siberia and America).
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