They are not necessarily closer to the latter genetically, actually. They only have some genetic similarities to people in the extreme Northwest part of South Asia, who make up like 1% of "Indians."
Pashtuns score radically differently from Indians on nMonte
Vs North South Asians
Afghans have a strong genetic relationship with Iranians, especially with ones from Eastern Iranian and Mazandaran, and they are West Asian.
To answer your question, it's a bit complicated. The ones from Afghanistan will consider themselves either Middle Eastern or Central Asian, whereas the Pakistani ones may consider themselves South-Central Asians. I personally consider that part of my heritage to be Middle Eastern, because Iranians, who are overall the closest ethnic group to Pashtuns in term of everything (outside of Afghanistan) are considered Middle Easterners. It wouldn't make sense to call one of them Middle Eastern but not the other one.
Afghans dont have to cluster with Arabs and Levantines to be "Middle Eastern." Sicilians and Finns are 1000 times farther from each other than Afghans and Lebanese people are from each other, yet the former two groups are both considered "European."
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