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Thread: Mephisto's Grand K12 Modern Calculator (DIY)

  1. #1
    乁 了 ' ' ◠ Lemgrant's Avatar
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    Default Mephisto's Grand K12 Modern Calculator (DIY)

    Tutorial – How to use DIY calculator files and oracle data sheets
    https://anthrogenica.com/showthread....le-data-sheets

    Mephisto's Grand K12 Modern Calculator: https://www.eupedia.com/forum/thread...ern-Calculator

    Download of the calculator files:
    https://drive.google.com/open?id=1_I...OPvQF5SHxNSTEO

    4admix and nMonte files:
    https://drive.google.com/open?id=1Zz...C_F4gfN6nJUXkI

    And the DIY Dodecad files which you will need to run the calculator
    https://drive.google.com/file/d/0B7A...4NjRmMTlk/view

    my result (with converted file from Ancestry to ftdna):
    Spoiler!

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    Default

    Cumansky

    62.44% NW_Europe
    17.19% Mediterranean
    10.18% Caucasus
    2.70% S_Asia
    2.35% Yakut
    2.04% Kalash
    1.37% Brahui-Baloochi
    0.92% W_Africa
    0.70% Arabia
    0.06% Mozabite
    0.03% E_Asia
    0.01% Papuan

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    @Lemgrant nMonte website is down at the moment for me, when is running again I PM your result

  4. #4
    乁 了 ' ' ◠ Lemgrant's Avatar
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    Quote Originally Posted by Cumansky View Post
    Cumansky

    62.44% NW_Europe
    17.19% Mediterranean
    10.18% Caucasus
    2.70% S_Asia
    2.35% Yakut
    2.04% Kalash
    1.37% Brahui-Baloochi
    0.92% W_Africa
    0.70% Arabia
    0.06% Mozabite
    0.03% E_Asia
    0.01% Papuan
    Why without oracle? Open the program Admix4_097 and load the K12_oracle_commas.txt
    here is your result:
    Spoiler!

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    Quote Originally Posted by Lemgrant View Post
    Why without oracle? Open the program Admix4_097 and load the K12_oracle_commas.txt
    here is your result:
    Spoiler!
    Oracle is very general, but calculator is more complex IMO

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    Quote Originally Posted by Cumansky View Post
    @Lemgrant nMonte website is down at the moment for me, when is running again I PM your result
    What website? I thought you would run it on your computer. Are there other nMonte websites other than the poi's website?

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    Using 3 populations approximation:
    1 50% Lithuanian:F1 +25% Russian:HGDP00879 +25% Italian_North:HGDP01147 @ 3.504144
    https://www.theapricity.com/forum/sh...=1#post5732993

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    12 ancestral populations
    131401 total SNPs
    0 flipped SNPs
    42187 heterozygous SNPs
    104 no-calls
    1591 absent SNPs
    0.987101 genotype rate
    mode genomewide

    1695 SNPs missing (no-call or absent)

    ----------------------------
    FINAL ADMIXTURE PROPORTIONS:
    ----------------------------

    0.00% Papuan
    0.41% Yakut
    7.31% Caucasus
    0.05% W_Africa
    0.02% E_Asia
    2.00% Kalash
    66.44% NW_Europe
    0.02% Arabia
    1.60% Mozabite
    2.62% S_Asia
    2.02% Brahui-Baloochi
    17.51% Mediterranean

    Least-squares method.

    Using 1 population approximation:
    1 Scottish:HG00103 @ 2.828422
    2 English:HG00128 @ 5.155707
    3 Finnish:HG00174 @ 6.178496
    4 Lithuanian:F1 @ 6.527551
    5 Belarusian:43s @ 6.544436
    6 Czech:NA15725 @ 6.894635
    7 Estonian:393 @ 7.156952
    8 Ukrainian:Lv240 @ 11.360661
    9 Mordovian:27 @ 12.088529
    10 Russian:HGDP00879 @ 12.710185
    11 Hungarian:6 @ 13.04258
    12 Croatian:CRO107 @ 15.006329
    13 French:HGDP00524 @ 15.687246
    14 Basque:HGDP01360 @ 18.481318
    15 Spanish:HG01503 @ 22.107197
    16 Saami:SD60 @ 23.077507
    17 Romanian:G408 @ 23.102715
    18 Bulgarian:A4 @ 23.146808
    19 Italian_North:HGDP01147 @ 24.096516
    20 Orcadian:HGDP00796 @ 27.336533
    129 iterations.

    Using 2 populations approximation:
    1 Lithuanian:F1+English:HG00128 @ 2.578135
    2 Scottish:HG00103+Scottish:HG00103 @ 2.828422
    3 Lithuanian:F1+Czech:NA15725 @ 3.157469
    4 Scottish:HG00103+Finnish:HG00174 @ 3.283917
    5 Belarusian:43s+Scottish:HG00103 @ 3.382744
    6 Estonian:393+English:HG00128 @ 3.383726
    7 Lithuanian:F1+Scottish:HG00103 @ 3.521755
    8 Scottish:HG00103+English:HG00128 @ 3.568401
    9 Estonian:393+Scottish:HG00103 @ 3.792415
    10 Belarusian:43s+English:HG00128 @ 3.793406
    11 Czech:NA15725+Scottish:HG00103 @ 3.944766
    12 Orcadian:HGDP00796+Italian_North:HGDP01147 @ 3.949091
    13 Italian_North:HGDP01147+Norwegian:NOR119 @ 4.071817
    14 Estonian:393+Czech:NA15725 @ 4.124867
    15 English:HG00128+Finnish:HG00174 @ 4.20733
    16 Orcadian:HGDP00796+Bulgarian:A4 @ 4.660243
    17 Orcadian:HGDP00796+Albanian:191 @ 4.75169
    18 Italian_North:HGDP01147+Icelandic:NA15762 @ 4.938656
    19 Spanish:HG01503+Norwegian:NOR119 @ 4.954622
    20 Belarusian:43s+Czech:NA15725 @ 5.005469
    8385 iterations.

    Using 3 populations approximation:
    1 50% Lithuanian:F1 +25% Basque:HGDP01360 +25% Belarusian:43s @ 2.148077
    2 50% Lithuanian:F1 +25% Basque:HGDP01360 +25% Lithuanian:F1 @ 2.278163
    3 50% Scottish:HG00103 +25% Lithuanian:F1 +25% Czech:NA15725 @ 2.281723
    4 50% Lithuanian:F1 +25% French:HGDP00524 +25% Scottish:HG00103 @ 2.320319
    5 50% Scottish:HG00103 +25% Lithuanian:F1 +25% English:HG00128 @ 2.362422
    6 50% Lithuanian:F1 +25% French:HGDP00524 +25% Belarusian:43s @ 2.406812
    7 50% Scottish:HG00103 +25% Belarusian:43s +25% Scottish:HG00103 @ 2.495697
    8 50% Lithuanian:F1 +25% Basque:HGDP01360 +25% Scottish:HG00103 @ 2.50197
    9 50% Scottish:HG00103 +25% Scottish:HG00103 +25% Finnish:HG00174 @ 2.513234
    10 50% English:HG00128 +25% Lithuanian:F1 +25% Scottish:HG00103 @ 2.54258
    11 50% Lithuanian:F1 +25% English:HG00128 +25% English:HG00128 @ 2.578135
    12 50% Scottish:HG00103 +25% Estonian:393 +25% English:HG00128 @ 2.587459
    13 50% Lithuanian:F1 +25% French:HGDP00524 +25% Lithuanian:F1 @ 2.593496
    14 50% Scottish:HG00103 +25% Estonian:393 +25% Czech:NA15725 @ 2.623106
    15 50% Scottish:HG00103 +25% Lithuanian:F1 +25% Scottish:HG00103 @ 2.641201
    16 50% Scottish:HG00103 +25% Belarusian:43s +25% English:HG00128 @ 2.647515
    17 50% English:HG00128 +25% Spanish:HG01503 +25% Norwegian:NOR119 @ 2.704574
    18 50% English:HG00128 +25% Lithuanian:F1 +25% Estonian:393 @ 2.709264
    19 50% Scottish:HG00103 +25% Estonian:393 +25% Scottish:HG00103 @ 2.717362
    20 50% Lithuanian:F1 +25% French:HGDP00524 +25% Estonian:393 @ 2.721887
    308983 iterations.

    Using 4 populations approximation:
    1 Orcadian:HGDP00796+Basque:HGDP01360+Belarusian:43s +Croatian:CRO107 @ 1.941317
    2 Orcadian:HGDP00796+Belarusian:43s+English:HG00128+ Spanish:HG01503 @ 2.032589
    3 Orcadian:HGDP00796+Basque:HGDP01360+Hungarian:6+Be larusian:43s @ 2.090193
    4 Orcadian:HGDP00796+Italian_North:HGDP01147+Belarus ian:43s+English:HG00128 @ 2.143842
    5 Basque:HGDP01360+Lithuanian:F1+Lithuanian:F1+Belar usian:43s @ 2.148077
    6 Orcadian:HGDP00796+Belarusian:43s+Czech:NA15725+Sp anish:HG01503 @ 2.189832
    7 Basque:HGDP01360+Hungarian:6+Belarusian:43s+Norweg ian:NOR119 @ 2.197163
    8 Orcadian:HGDP00796+Basque:HGDP01360+Belarusian:43s +Ukrainian:Lv240 @ 2.220293
    9 Basque:HGDP01360+Belarusian:43s+Norwegian:NOR119+C roatian:CRO107 @ 2.273821
    10 Basque:HGDP01360+Lithuanian:F1+Lithuanian:F1+Lithu anian:F1 @ 2.278163
    11 Lithuanian:F1+Czech:NA15725+Scottish:HG00103+Scott ish:HG00103 @ 2.281723
    12 French:HGDP00524+Orcadian:HGDP00796+Hungarian:6+Be larusian:43s @ 2.319546
    13 French:HGDP00524+Lithuanian:F1+Lithuanian:F1+Scott ish:HG00103 @ 2.320319
    14 Orcadian:HGDP00796+Italian_North:HGDP01147+Belarus ian:43s+Czech:NA15725 @ 2.345222
    15 Basque:HGDP01360+Hungarian:6+Belarusian:43s+Icelan dic:NA15762 @ 2.350645
    16 Lithuanian:F1+Scottish:HG00103+Scottish:HG00103+En glish:HG00128 @ 2.362422
    17 Orcadian:HGDP00796+Italian_North:HGDP01147+Belarus ian:43s+Scottish:HG00103 @ 2.381665
    18 Basque:HGDP01360+Ukrainian:Lv240+Czech:NA15725+Nor wegian:NOR119 @ 2.38534
    19 Basque:HGDP01360+Ukrainian:Lv240+Czech:NA15725+Ice landic:NA15762 @ 2.405805
    20 French:HGDP00524+Lithuanian:F1+Lithuanian:F1+Belar usian:43s @ 2.406812
    21 Basque:HGDP01360+Belarusian:43s+Ukrainian:Lv240+No rwegian:NOR119 @ 2.41807
    22 Basque:HGDP01360+Ukrainian:Lv240+English:HG00128+N orwegian:NOR119 @ 2.418797
    23 Orcadian:HGDP00796+English:HG00128+Spanish:HG01503 +Finnish:HG00174 @ 2.426315
    24 Orcadian:HGDP00796+Italian_North:HGDP01147+English :HG00128+Finnish:HG00174 @ 2.44688
    25 Orcadian:HGDP00796+Italian_North:HGDP01147+Lithuan ian:F1+Czech:NA15725 @ 2.451952
    26 Orcadian:HGDP00796+Italian_North:HGDP01147+Scottis h:HG00103+Finnish:HG00174 @ 2.463911
    27 Czech:NA15725+Scottish:HG00103+Spanish:HG01503+Nor wegian:NOR119 @ 2.477179
    28 French:HGDP00524+Orcadian:HGDP00796+Belarusian:43s +Croatian:CRO107 @ 2.482533
    29 French:HGDP00524+Lithuanian:F1+Belarusian:43s+Scot tish:HG00103 @ 2.486431
    30 Belarusian:43s+Scottish:HG00103+Scottish:HG00103+S cottish:HG00103 @ 2.495697
    31 Basque:HGDP01360+Lithuanian:F1+Lithuanian:F1+Scott ish:HG00103 @ 2.50197
    32 Scottish:HG00103+Scottish:HG00103+Scottish:HG00103 +Finnish:HG00174 @ 2.513234
    33 Belarusian:43s+English:HG00128+Spanish:HG01503+Nor wegian:NOR119 @ 2.5159
    34 French:HGDP00524+Orcadian:HGDP00796+Ukrainian:Lv24 0+Czech:NA15725 @ 2.517002
    35 French:HGDP00524+Ukrainian:Lv240+Czech:NA15725+Nor wegian:NOR119 @ 2.519711
    36 Basque:HGDP01360+Ukrainian:Lv240+Icelandic:NA15762 +English:HG00128 @ 2.539935
    37 Lithuanian:F1+Scottish:HG00103+English:HG00128+Eng lish:HG00128 @ 2.54258
    38 Orcadian:HGDP00796+Czech:NA15725+Scottish:HG00103+ Spanish:HG01503 @ 2.545063
    39 Orcadian:HGDP00796+Belarusian:43s+Scottish:HG00103 +Spanish:HG01503 @ 2.553463
    40 Lithuanian:F1+Lithuanian:F1+English:HG00128+Englis h:HG00128 @ 2.578135
    2536650 iterations.


    Gaussian method.
    Noise dispersion set to 0.421402

    Using 1 population approximation:
    1 Scottish:HG00103 @ 3.792727
    2 English:HG00128 @ 4.102686
    3 Lithuanian:F1 @ 4.987089
    4 Belarusian:43s @ 5.196902
    5 Czech:NA15725 @ 5.513281
    6 Hungarian:6 @ 5.992916
    7 Estonian:393 @ 6.013141
    8 Ukrainian:Lv240 @ 6.415347
    9 Croatian:CRO107 @ 6.47737
    10 Russian:HGDP00879 @ 7.382361
    11 Finnish:HG00174 @ 7.5002
    12 Mordovian:27 @ 7.872767
    13 Basque:HGDP01360 @ 8.163683
    14 Bulgarian:A4 @ 8.223017
    15 Romanian:G408 @ 8.373225
    16 French:HGDP00524 @ 8.584277
    17 Italian_North:HGDP01147 @ 9.178213
    18 Albanian:191 @ 9.957682
    19 Greek:NA17373 @ 10.316477
    20 Spanish:HG01503 @ 10.532463
    129 iterations.

    Using 2 populations approximation:
    1 Lithuanian:F1+Scottish:HG00103 @ 3.741767
    2 Scottish:HG00103+Scottish:HG00103 @ 3.792727
    3 Scottish:HG00103+English:HG00128 @ 3.797527
    4 Belarusian:43s+Scottish:HG00103 @ 3.931696
    5 English:HG00128+English:HG00128 @ 4.102686
    6 Czech:NA15725+Scottish:HG00103 @ 4.153717
    7 Lithuanian:F1+English:HG00128 @ 4.270834
    8 Belarusian:43s+English:HG00128 @ 4.271228
    9 Basque:HGDP01360+Lithuanian:F1 @ 4.345009
    10 Estonian:393+Scottish:HG00103 @ 4.431259
    11 Scottish:HG00103+Finnish:HG00174 @ 4.462681
    12 Lithuanian:F1+Hungarian:6 @ 4.519934
    13 Basque:HGDP01360+Belarusian:43s @ 4.565276
    14 Bulgarian:A4+Norwegian:NOR119 @ 4.61841
    15 Hungarian:6+Norwegian:NOR119 @ 4.670742
    16 Czech:NA15725+English:HG00128 @ 4.690028
    17 Lithuanian:F1+Croatian:CRO107 @ 4.699975
    18 Lithuanian:F1+Belarusian:43s @ 4.712965
    19 Orcadian:HGDP00796+Hungarian:6 @ 4.712979
    20 Bulgarian:A4+Icelandic:NA15762 @ 4.721225
    8385 iterations.

    Using 3 populations approximation:
    1 50% Scottish:HG00103 +25% Belarusian:43s +25% Scottish:HG00103 @ 3.659827
    2 50% Scottish:HG00103 +25% Lithuanian:F1 +25% Scottish:HG00103 @ 3.666268
    3 50% English:HG00128 +25% Icelandic:NA15762 +25% Scottish:HG00103 @ 3.715796
    4 50% Scottish:HG00103 +25% Lithuanian:F1 +25% English:HG00128 @ 3.722344
    5 50% Scottish:HG00103 +25% Belarusian:43s +25% English:HG00128 @ 3.738688
    6 50% Lithuanian:F1 +25% Scottish:HG00103 +25% Scottish:HG00103 @ 3.741767
    7 50% English:HG00128 +25% Hungarian:6 +25% Icelandic:NA15762 @ 3.742959
    8 50% English:HG00128 +25% Scottish:HG00103 +25% Norwegian:NOR119 @ 3.745545
    9 50% Scottish:HG00103 +25% Czech:NA15725 +25% Icelandic:NA15762 @ 3.762129
    10 50% Scottish:HG00103 +25% Scottish:HG00103 +25% English:HG00128 @ 3.770274
    11 50% Scottish:HG00103 +25% Czech:NA15725 +25% Norwegian:NOR119 @ 3.781057
    12 50% Scottish:HG00103 +25% Lithuanian:F1 +25% Belarusian:43s @ 3.785365
    13 50% English:HG00128 +25% Hungarian:6 +25% Norwegian:NOR119 @ 3.78888
    14 50% Scottish:HG00103 +25% English:HG00128 +25% English:HG00128 @ 3.797527
    15 50% Scottish:HG00103 +25% French:HGDP00524 +25% Belarusian:43s @ 3.812016
    16 50% English:HG00128 +25% Icelandic:NA15762 +25% English:HG00128 @ 3.812071
    17 50% English:HG00128 +25% Icelandic:NA15762 +25% Croatian:CRO107 @ 3.821323
    18 50% Scottish:HG00103 +25% Icelandic:NA15762 +25% English:HG00128 @ 3.821731
    19 50% Scottish:HG00103 +25% English:HG00128 +25% Norwegian:NOR119 @ 3.824735
    20 50% Lithuanian:F1 +25% Basque:HGDP01360 +25% Scottish:HG00103 @ 3.825766
    760563 iterations.

    Using 4 populations approximation:
    1 Basque:HGDP01360+Belarusian:43s+Icelandic:NA15762+ Scottish:HG00103 @ 3.48584
    2 Basque:HGDP01360+Belarusian:43s+Icelandic:NA15762+ English:HG00128 @ 3.500142
    3 Basque:HGDP01360+Belarusian:43s+Scottish:HG00103+N orwegian:NOR119 @ 3.555674
    4 Basque:HGDP01360+Belarusian:43s+English:HG00128+No rwegian:NOR119 @ 3.590607
    5 Italian_North:HGDP01147+Belarusian:43s+Icelandic:N A15762+English:HG00128 @ 3.609937
    6 Italian_North:HGDP01147+Belarusian:43s+Icelandic:N A15762+Scottish:HG00103 @ 3.632606
    7 Belarusian:43s+Scottish:HG00103+Scottish:HG00103+S cottish:HG00103 @ 3.659827
    8 Italian_North:HGDP01147+Czech:NA15725+Icelandic:NA 15762+English:HG00128 @ 3.661039
    9 French:HGDP00524+Belarusian:43s+Icelandic:NA15762+ Scottish:HG00103 @ 3.664731
    10 Lithuanian:F1+Scottish:HG00103+Scottish:HG00103+Sc ottish:HG00103 @ 3.666268
    11 Italian_North:HGDP01147+Belarusian:43s+English:HG0 0128+Norwegian:NOR119 @ 3.667507
    12 Basque:HGDP01360+Czech:NA15725+Icelandic:NA15762+S cottish:HG00103 @ 3.668164
    13 Italian_North:HGDP01147+Belarusian:43s+Scottish:HG 00103+Norwegian:NOR119 @ 3.669346
    14 French:HGDP00524+Belarusian:43s+Scottish:HG00103+N orwegian:NOR119 @ 3.677261
    15 Basque:HGDP01360+Czech:NA15725+Icelandic:NA15762+E nglish:HG00128 @ 3.677626
    16 Italian_North:HGDP01147+Czech:NA15725+Icelandic:NA 15762+Scottish:HG00103 @ 3.705705
    17 Icelandic:NA15762+Scottish:HG00103+English:HG00128 +English:HG00128 @ 3.715796
    18 Lithuanian:F1+Scottish:HG00103+Scottish:HG00103+En glish:HG00128 @ 3.722344
    19 Basque:HGDP01360+Hungarian:6+Belarusian:43s+Icelan dic:NA15762 @ 3.726364
    20 Italian_North:HGDP01147+Czech:NA15725+English:HG00 128+Norwegian:NOR119 @ 3.734257
    21 Belarusian:43s+Scottish:HG00103+Scottish:HG00103+E nglish:HG00128 @ 3.738688
    22 Italian_North:HGDP01147+Lithuanian:F1+Icelandic:NA 15762+English:HG00128 @ 3.740357
    23 Lithuanian:F1+Lithuanian:F1+Scottish:HG00103+Scott ish:HG00103 @ 3.741767
    24 Hungarian:6+Icelandic:NA15762+English:HG00128+Engl ish:HG00128 @ 3.742959
    25 Scottish:HG00103+English:HG00128+English:HG00128+N orwegian:NOR119 @ 3.745545
    26 Orcadian:HGDP00796+Basque:HGDP01360+Belarusian:43s +English:HG00128 @ 3.746019
    27 Orcadian:HGDP00796+Basque:HGDP01360+Belarusian:43s +Scottish:HG00103 @ 3.747509
    28 Basque:HGDP01360+Czech:NA15725+Scottish:HG00103+No rwegian:NOR119 @ 3.749621
    29 Belarusian:43s+Icelandic:NA15762+English:HG00128+S panish:HG01503 @ 3.752599
    30 Orcadian:HGDP00796+Italian_North:HGDP01147+Belarus ian:43s+English:HG00128 @ 3.755179
    31 Czech:NA15725+Icelandic:NA15762+Scottish:HG00103+E nglish:HG00128 @ 3.756067
    32 Italian_North:HGDP01147+Czech:NA15725+Scottish:HG0 0103+Norwegian:NOR119 @ 3.756108
    33 Czech:NA15725+Icelandic:NA15762+Scottish:HG00103+S cottish:HG00103 @ 3.762129
    34 Orcadian:HGDP00796+Italian_North:HGDP01147+Belarus ian:43s+Scottish:HG00103 @ 3.76816
    35 Scottish:HG00103+Scottish:HG00103+Scottish:HG00103 +English:HG00128 @ 3.770274
    36 Italian_North:HGDP01147+Lithuanian:F1+English:HG00 128+Norwegian:NOR119 @ 3.776917
    37 Czech:NA15725+Scottish:HG00103+Scottish:HG00103+No rwegian:NOR119 @ 3.781057
    38 Basque:HGDP01360+Czech:NA15725+English:HG00128+Nor wegian:NOR119 @ 3.781407
    39 Lithuanian:F1+Belarusian:43s+Scottish:HG00103+Scot tish:HG00103 @ 3.785365
    40 French:HGDP00524+Italian_North:HGDP01147+Belarusia n:43s+Icelandic:NA15762 @ 3.788718
    7320739 iterations.

  9. #9
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    Quote Originally Posted by Lemgrant View Post
    What website? I thought you would run it on your computer. Are there other nMonte websites other than the poi's website?
    Poi website is down..

  10. #10
    乁 了 ' ' ◠ Lemgrant's Avatar
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    Quote Originally Posted by celticdragongod View Post
    Spoiler!
    Either Scottish samples are highly Polish-Lithuanian admixed or Polish-Lithuanian samples are highly Scottish admixed.

    There was a Scottish diaspora in Poland... What do you think?

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