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Thread: Polish DNA from studies on GEDmatch

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    Default Polish DNA from studies on GEDmatch

    I will post here kit numbers of academic Polish samples from studies that I'm uploading to GEDmatch Genesis.

    Poles from Tambets et al. 2018:

    https://genomebiology.biomedcentral....059-018-1522-1

    Tambets 2018 sample Poland135 - kit number LK5810440
    Tambets 2018 sample Poland148 - kit number KC6230115
    Tambets 2018 sample Poland149 - kit number HE4756510
    Tambets 2018 sample Poland150 - kit number HN5578439
    Tambets 2018 sample Poland151 - kit number XD1211284

    ^^^
    Here is what these Polish samples get in Fig. 3 from this study:



    Last edited by Litvinski; 04-16-2019 at 01:46 AM.

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    Poles from Behar et al. 2013:

    https://www.ncbi.nlm.nih.gov/pubmed/25079123

    Behar 2013 sample Pole_Poland1 - kit number UR9122953
    Behar 2013 sample Pole_Poland2 - kit number GT5237590
    Behar 2013 sample Pole_Poland3 - kit number XV5220138
    Behar 2013 sample Pole_Poland5 - kit number QT5909459
    Behar 2013 sample Pole_Poland6 - kit number YA5670771
    Behar 2013 sample Pole_Poland9 - kit number PK5923501
    Behar 2013 sample Pole_Poland11 - kit number TF3777282
    Behar 2013 sample Pole12p_1m - kit number LZ6789348
    Behar 2013 sample Poland132 - kit number KZ8706898
    Behar 2013 sample Poland133 - kit number AZ8283838
    Behar 2013 sample Poland136 - kit number EK6054770
    Behar 2013 sample Poland137 - kit number TK3628144
    Behar 2013 sample Poland138 - kit number EZ6423511
    Behar 2013 sample Poland140 - kit number XF3966585
    Behar 2013 sample Poland141 - kit number DR5396941
    Behar 2013 sample Poland142 - kit number LK5514818
    Behar 2013 sample Poland143 - kit number GL2046169

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    What region? Do you have PCA for Tambets 2018?

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    Quote Originally Posted by MrVlachZyraxes View Post
    What region?
    Apparently some of them are Estonian Poles (those which are not called Pole_Poland, are from Estonia).

    Now I've uploaded Poles from Pagani 2016, one is from Wrocław, one from Kohtla-Jrve, two unspecified:

    Poles from Pagani et al. 2016:

    https://www.ncbi.nlm.nih.gov/pubmed/27654910

    Pagani 2016 sample Pole1 Kohtla-Jrve - kit BD1045630
    Pagani 2016 sample Pole2 - kit number JR7565919
    Pagani 2016 sample Pole3 - kit number PB4657964
    Pagani 2016 sample Pole4 Wroclaw - kit LG8363351

    From the spreadsheet with details about each sample:



    ^^^
    This is where the place is located: https://en.wikipedia.org/wiki/Kohtla-J%C3%A4rve

    Edit:

    This thread is mainly to show people how crappy are Polish samples available in studies published to date.

    I was saying this on TA for a long time but some people didn't believe that scientific samples can be crappy.

    Quote Originally Posted by MrVlachZyraxes View Post
    What region? Do you have PCA for Tambets 2018?
    They have matches from Estonia, so probably they are Estonian Poles (only samples labeled as "Pole_Poland" are from present-day Poland):



    Estonia used to belong to Poland, but I think it is misleading that samples which are ethnic Poles from Estonia are labeled as "Poland133" etc.

    =====

    These famous Estonian Poles were first published by Behar in 2013/2014, not by Kushniarevich in 2015:

    http://polishgenes.blogspot.com/2015...revich-et.html



    Kushniarevich used samples genotyped by Behar, but Behar didn't say that they were Poles from Estonia.

    Kushniarevich 2015 was the first study which labeled them properly as ethnic Polish minority in Estonia.

    =====

    Historically Latvia has had a much larger Polish minority than Estonia, they should test also Latvian Poles:

    https://www.theapricity.com/forum/sh...Latvia-s-Poles

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    Make PCA, I send my Polish kit #..

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    BTW how to get a truly representative sample of Poles:

    https://www.theapricity.com/forum/sh...=1#post5699037

    You need to sample regional groups from all these areas:

    https://www.theapricity.com/forum/sh...ders-of-Poland

    Quote Originally Posted by MrVlachZyraxes View Post
    Make PCA, I send my Polish kit #..
    Okay please send me in a private message.

    Edit:

    This study has Poles from Warsaw but so far I couldn't find where to download these genomes:

    https://www.cell.com/current-biology...822(08)00956-1

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    Quote Originally Posted by Peterski View Post
    Okay send me in a private message.
    Make PCA, I post here GEDmatch Polish kit #.

    What is the good calculator?

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    Quote Originally Posted by MrVlachZyraxes View Post
    Make PCA, I post here GEDmatch Polish kit #.

    What is the good calculator?
    Okay post just kit numbers and I will choose calculator later.

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    Nah, make first, use kits from study as foundation.

    Then I send.

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    Quote Originally Posted by Peterski View Post
    Okay post just kit numbers and I will choose calculator later.
    Ok, I will post here Polish kits, Puntdnal K13 calc..

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