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Not necessarily. My point was if the re-settlement didn't occur and all the R1a is a local re-growth as you mention from its survivors then it should show closer MRCA in YDNA. However, if Lukasz is right about the re-settlement after the massacre, then one would expect these assimilated R1a to be very distant from those 400 years ago.
I was merely trying to look at it from both angles. That is one to one German you're comparing. You can't possibly take autosomal of one individual and claim the whole area is an exact reflection of them. That's ludicrous. Should be similar sure but not exact.
Albanians are far more homogeneous and there are some very different plotting that come from my area with all grandparents coming from the same. Using your reasoning we should have the same autosomal break down, yet thats not always the case.
You're also forgetting autosomal recombination occurs at random, and one can inherit more from one ancestry than another. Making them more like mother or father etc.
There is a Lithuanian user on Eupedia whose ancestor migrated from Germany probably during Prussia/Polish-Lithuanian Commonwealth, with the surname Gotta, and that surname is most common in Hesse. He has little to no German admixture though because that can change very quickly in 300 years.
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