try out my K9 DIYdodecad/AdmixtureStudio calculator

[Kaspias]

Me

Scandinavian 26,88%
Baltic 21,04%
Sardinian 17,47%
Finnic 16,32%
East_Asian 8,7%
Basque 5,4%
African 2,18%
Native_American 1,5%
SouthEast_Asian 0,52%


Deniz

Baltic 25,55%
Scandinavian 22,96%
Sardinian 17,86%
Finnic 17,21%
Basque 8,46%
East_Asian 5,88%
African 2,03%
Native_American 0,03%
SouthEast_Asian 0,01%

[WeirdLookingFellow]

Pretty nice. Don't know what to say about the results.

Me:


My gf:

[dududud]

Father:



Mother:




Me:

[vbnetkhio]

It would be great if you could, thanks.



Definitely.

let's say you want to make a calculator with 3 components, Pygmy, Siberian and Serbian.

when you run a calcualtor in admixture studio, all the calculator files get downloaded into the AdmixtureStudioV14/Calculators folder. all the files which you need are in those folders.
so for example, run Eurogenes k36, it will take around half a minute do donwload, then close it. then do the same with tolan K71.
now you have all the files that you need.

you can only do this with calculators which use the exactly same SNPs. look at the "admix.alleles" file in the "TOLAN_K71" folder. it has 2.444 kb. now look at the "admix.alleles" file in the "EUROGENES_K36" folder. it also has 2.444 kb. so both calculators use the same SNPs. now we can go on. (you can also open the "admix.alleles" file in notepad and see the list of SNPs)

now open the "k71a.F" file in the "TOLAN_K71" folder in notepad. now sellect all the content of the file (ctrl+a) and copy it (ctrl+c) and paste it in an empty libreoffice calc sheet (libreoffice calc is a free version of excel which you can just downlaod from the official page and install. it's very practical for this). the text import wizard will open. you should tick only "separated by: space". all other options should be unticked. then click ok and it will be pasted. than open another sheet in libreoffice, and do the same with the .f file in the eurogenes k36 folder. (edit: some calculators havae it separated by tabulator instead of space. you'll know which one to use)

now open the admix.txt file in the eurogenesk36 folder. admixtures "Pygmy" and "Siberian" are in rows 29 and 30. that means that columns 29 and 30 in that libreoffice sheet belong to those admixtures. now delete all other columns in that sheet except the 29th and 30th ones. now do the same with the "Serbian" from the k71 calculator.

now you have only 2 columns from k36 and 1 column from k71. now open a new sheet and paste the Pygmy, Siberian, Serbian columns next to each other.

than make a new folder and call it "SUPREME_K3". select all the contents of that last libreoffice sheet and just paste them in an notepad file. save it as "K3.F" in the "SUPREME_K3" folder.
than open the folder of any other calculator, for example eurogenes k36. copy the admix.alleles, admix.par, admix.txt and DIYDodecadWin.exe files and paste them into the "SUPREME_K3" folder.

now open admix.txt and edit the admixtures. you can call them whatever you want, but there has to be 3 of them, and they have to be in the same order as the columns in the "K3.F" file. in your "K3.F" file, teh first column is "Pygmy", second "Siberian", and third "Serbian". unless you pasted them diferently in that last libreoffice sheet of course. so your admix.txt file should look like this

Pygmy
Siberian
Serbian

then open the admix.par file. you have to edit 2 things. replace the "36" with 3, and replace the "admix.36.F" with "K3.F"

now you have a working calculator folder which you can open in AdmixtureStudio

[Egyvalaki]

I wanted to try it but I don't have the "run" option.

[vbnetkhio]

I wanted to try it but I don't have the "run" option.

do you have an old version of admixture studio? the current one is 1.4

[Egyvalaki]

do you have an old version of admixture studio? the current one is 1.4

No, i just downloaded the new version....

[vbnetkhio]

No, i just downloaded the new version....

i just downloaded the newest version from their page, opened it and the "run" is there. can you post a screenshot?

[firemonkey]

Component %
Scandinavian 41.73%
Finnic 22.07%
Baltic 16.46%
Sardinian 9.17%
Basque 8.8%
African 0.97%
Native_American 0.79%
SouthEast_Asian 0.01%


Not good for British people.

[celticdragongod]

system('DIYDodecadWin admix.par')
-----------------------------------------------------------
-- DIY Dodecad v 2.1 --------------------------------------
------------------------------------------------@@@@@@@----
-- Copyright (c) 2011 Dienekes Pontikos -------@@-----@@---
------------------------------------------------------@@---
-- More information: ---------------------------@@@@@@@----
----- Dienekes' Anthropology Blog -------------@@----------
-------- http://dienekes.blogspot.com ---------@@----------
----- The Dodecad Ancestry Project ------------@@@@@@@@@---
-------- http://dodecad.blogspot.com ----------------------
-----------------------------------------------------------

9 ancestral populations
165688 total SNPs
12 flipped SNPs
56792 heterozygous SNPs
145 no-calls
3459 absent SNPs
0.978248 genotype rate
mode genomewide

3604 SNPs missing (no-call or absent)

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

0.60% African
0.00% East_Asian
0.19% Native_American
0.01% SouthEast_Asian
18.39% Finnic
22.29% Baltic
39.92% Scandinavian
10.78% Basque
7.82% Sardinian

CPU time = 169.95 sec