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For clarification purposes, the term Mongolians will be used just for Mongolia and Inner Mongolia, while the term Mongols for all Mongols regardless of place of origin.
Haplogroup C-M401 is found with a frequency 15% in Mongolians, 13% in Kyrgyz, 25% in Kazakhs, 33% in Hazara and 40% in Uzbeks in Afganistan, 10% in Nogai in Russia, 4% in Turkmens, 7% in Pakistani, 0.7% in northern Han. C-M504* is also found in Mongolians and in northern China. Given its moderate frequency in Mongolia but also its presence in peoples historically associated with Mongol origins like Jalair tribe in Kazakhstan or the Hazara in Afghanistan is the haplogroup best associated with original Mongols and is none other than the so called C2*-starcluster, previously C3*-starcluster or alternative mutation F4002.
The distribution of the starcluster C-M401 matches the extension of the Mongol empire at the time of Chinggis Khaan.
The ISOGG 2018 haplogroup C tree of C-M504, the marker most commonly found in Mongolians is:
C2b1a3 M504
C2b1a3~ AM01318/CTS5559/PF4730/Z1866, F914, F966, F1918, F2007, F2914, F3747, F3770, F3779, F3791, F3795, F3810, F3827, F3897, F3919, F3932, F3939, F3945, F3991, F4023, F4031, F4141, FGC16301/Y4523, FGC16306/SK1068/Y4527, FGC16313/Y4532, FGC16318/Y4536, FGC16319/Y4537, FGC16323/F9989/Y4464, FGC16326, FGC16328/SK1075/Y4541, FGC16329/Y4542, FGC16330, FGC16332/Y4544, FGC16335, FGC16336, FGC16349, FGC16361, FGC16365, FGC16377/Y4558, FGC16381, FGC16394, FC16397/Y4570, FGC16402, FGC16403/Y4576, FGC16411/Y4580, FGC16412/Y4581, FGC16422/F12057/Y8801, FGC16424/Y4589, FGC16437/Y4597, FGC16440/SK1067/Y6719, FGC16445/F12443/Y8813, FGC16447, FGC16448/Y4602, FGC16450/Y4605, FGC16453/Y4606, FGC16456/Y4608, FGC16460/Y4611, FGC16467/Y4614, FGC16469, FGC16470, FGC16471, FGC16472/Y4617, FGC16475/Y4620, FGC16476/Y4621, FGC16481/Y4626, FGC16486/Y4630, FGC16489/Y4633, FGC16492/Y4636, FGC16496/Y4639, FGC16502, FGC16508/Y4645, FGC16509/Y4646, FGC16512/Y4649, FGC16513, FGC16586/F10157/Y8781, FGC16596, Y4601, Y8789
C2b1a3a M401
C2b1a3a1~ F3796, F4002, F12021/FGC16418/Y11098, F12308/FGC16431/Y1112
C2b1a3a1a~ F9700/FGC16305/Y4526, F10216/FGC16336/Y8818, F10312/FGC16342/Y8792, F11134/Y8798, F11271/FGC16596/Y8808, F11508/FGC16387/Y4565, F11899/FGC16411/Y4580, F12521/FGC16447/Y8784, F12844/FGC16470/Y8821, F13055/FGC16486/Y4630, F13100/FGC16489/Y4633, F13923/FGC16526/Y8791, FGC16467/Y4614, FGC16509/Y4646, FGC16595/Y11097
C2b1a3a1a1~ FGC16594/Y11137
C2b1a3a1a1a~ Y20085
C2b1a3a1a1a1~ Y20087
C2b1a3a1a2~ Z43948, Z43949, Z43950, Z43951, Z43952
C2b1a3a1a3~ F5481/FGC16328/SK1075/Y4541
C2b1a3a1a3a Y12782
C2b1a3a1a3a1~ Z31703, Z31704, Z31705, Z31706, Z31707
C2b1a3a1a3a2 F5483/SK1074
C2b1a3a1a3a3~ Z44371, Z44372, Z44373
C2b1a3a1a3b~ F10091/ZQ31, F11945, F13625
C2b1a3a1a3c~ SK1076
C2b1a3a1a3c1~ SK1077
C2b1a3a1a3d~ FGC16217, Y136036, Y136045, Y136046, Y136048
C2b1a3a1a4~ F9747, F10981, F11791/ZQ319, F11978
C2b1a3a1a4a~ F10001, F10868, F12703
C2b1a3a1a4a1~ F11885, F12330
C2b1a3a1a4a2~ F14806
C2b1a3a1a4b~ F14768
C2b1a3a1a4c~ BY31/F14779, F14763, F14770, F14772, F14778, SK1408.2
C2b1a3a1b~ F3960, F10077
C2b1a3a1b1~ F2763.2, F3845.2/L598.2
C2b1a3a1b2~ CTS9894.2/M3574.2/PF3036.2
C2b1a3a1c~ F10374, F12634/FGC27183/V3788, SK1072, SK1073
C2b1a3a1c1~ F11313, F11838, F12663, F12867
C2b1a3a2~ F10283, F11301, F12257, F13806
C2b1a3a2a~ F14749, F14751, F14752, F14760, F14766, F14769, F14771, F14776, F14782, F14783, F14784, F14785, F14798, F14799, F14800
C2b1a3a2a1~ F14750
C2b1a3b~ SK1069, SK1070
C2b1a3c~ SK1071
The subclades of Haplogroup C-M401 would be the best connected the dispersal of various Mongolic languages. The subclace F12308 should be the marker of main mongolic languages today like Khalkha and Oirat which all come from Middle Mongol language. The subclade F10283 is found among Daur, who are believed to descend from Karakhitai, a para-mongolic speaking people. So this subclade could represent para-mongolic languages. It is also the marker of the Qing dynasty, which had a Daur background, although Manchu were mainly C-M48. Main Oirat haplogroup is also C-M48.
On a sidenote, some changes from Middle Mongol to Khalkha language concern vowel harmony, for example the loss of ğ leading to long vowels:
nogoğon -> nogoon
ulağan -> ulaan
bağatur -> baatar
khağan -> khaan
This might lead to a new vowel harmony:
nogoon -> nogon
ulaan -> ulan
baatar -> batar
khaan -> khan
There are various classification schemes for the modern Mongolic languages. One of them is:
Mongolic
Daur (96,000 speakers)
Central Mongolic
Khamnigan (2,000 speakers)
Buryat (330,000 speakers)
Mongolian proper (5.2 million speakers)
Eastern and Central dialect
Khalkha
Chakhar
Khorchin
Ordos (123,000 speakers)
Oirat (including Kalmyk) (360,000 speakers)
Southern Mongolic (part of a GansuQinghai Sprachbund)
Shira Yugur (4,000 speakers)
Shirongolic
Monguor (150,000 speakers)
Bonan (6,000 speakers)
Santa (Dongxiang) (200,000 speakers)
Kangjia (1,000 speakers)
Moghol (200 speakers)
1. Y-DNA Haplogroup C and its Subclades - 2018
2. Whole-sequence analysis indicates that the Y chromosome C2*-Star Cluster traces back to ordinary Mongols, rather than Genghis Khan
3. Molecular Genealogy of a Mongol Queens Family and Her Possible Kinship with Genghis Khan
4. Distribution of Y-Chromosome Haplogroups of the Kazakh from the South Kazakhstan, Zhambyl, and Almaty Regions
5. Afghanistan's Ethnic Groups Share a Y-Chromosomal Heritage Structured by Historical Events
6. Afghan Hindu Kush: Where Eurasian Sub-Continent Gene Flows Converge
7. Paternal Population History of East Asia: Sources, Patterns, and Microevolutionary Processes
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