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Thread: Gedmatch calculators on Vahaduo

  1. #31
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    Quote Originally Posted by Turul Karom View Post
    I ran some calcs. Can I ask your opinion on results?
    Post most interesting or most strange

  2. #32
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    Quote Originally Posted by Lukasz View Post
    Distances are huge usually because Vahaduo was projected for small PCA values, not frequencies. But I can divide distance value by 100 if you want for every calc (in the code of course).
    What is purpose of cycles?
    If we add 4x, 8x, 16x cycles, are results more precise or not?
    🔴🔵⚪

    Dušan_scaled
    Distance: 2.0944% / 0.02094437
    60.0 Slavic:RUS_Sunghir_MA
    23.0 Paleobalkanic:MKD_Anc
    17.0 Byzantine:TUR_Marmara_Balikesir_Byz

  3. #33
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    Target: K13
    Distance: 271.6777% / 2.71677726 | ADC: 0.25x
    41.6 Bulgarian
    35.8 Serbian
    16.4 Belorussian
    6.2 Yemenite_Jewish

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    MDLP World22 link fixed.

    BTW I saw that Verenich added some new references for his oracles in K23b and K11, for example Greek ones.
    Last edited by Lucas; 12-15-2019 at 09:37 AM.

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    Quote Originally Posted by Lukasz View Post
    Post most interesting or most strange
    I can post raw data input to you over PM to verify. No source populations removed, and zeros not printed. same results across all 1-16 cycles.

    Family is from western Hungary (county bordering Austria) and Hungarian regions in Transylvania (Székelyföld).

    Thoughts?

    puntDNAL K13, with 0.25 and 0.5 ADD DIST COL tightening:





    Eurogenes K13 with 0.25 and 0.5 ADD DIST COL tightening:




  6. #36
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    Quote Originally Posted by Turul Karom View Post
    I can post raw data input to you over PM to verify. No source populations removed, and zeros not printed. same results across all 1-16 cycles.

    Family is from western Hungary (county bordering Austria) and Hungarian regions in Transylvania (Székelyföld).
    ]
    I guess Hungarian reference in those calcs is eastern shifted comparing to your result. And you have some local German input too?
    But still it is only academic Hungarian reference, also in G25.

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    Quote Originally Posted by Lukasz View Post
    I guess Hungarian reference in those calcs is eastern shifted comparing to your result. And you have some local German input too?
    But still it is only academic Hungarian reference, also in G25.
    Oracle for Hungarian reference in Eurogenes K13 (deleted from source of course).

    Target: Hungarian
    Distance: 30.7088% / 0.30708815
    17.4 South_Polish
    13.2 Bulgarian
    13.2 Southwest_Russian
    12.2 Southeast_English
    7.0 Norwegian
    5.6 Romanian
    5.4 Southwest_Finnish
    5.2 Austrian
    3.4 Danish
    3.2 Ashkenazi
    2.6 Belorussian
    2.4 Estonian
    2.0 East_German
    1.8 Lebanese_Druze
    1.8 North_Italian
    1.4 Greek_Thessaly
    0.6 Italian_Jewish
    0.4 Abhkasian
    0.4 Karitiana
    0.4 Southwest_French
    0.2 Lezgin
    0.2 Sardinian

  8. #38
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    I got updated references for Eurogenes K15

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    Quote Originally Posted by FinalFlash View Post
    I got updated references for Eurogenes K15
    Post I will add.
    K36 Ancestral Report and Chromosomal Analysis / G25 Maps
    https://www.lm-genetics.com

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    Quote Originally Posted by Lukasz View Post
    Post I will add.
    Armenian_West,2.77,2.49,1.74,3.3,9.67,35.84,35.69, 5.68,2.26,0.07,0.11,0.19,0.17,0,0.02
    Armenian_East,3.4,4.09,1.87,2.77,7.23,38.5,32.99,5 .85,2.92,0,0.1,0.08,0.12,0.03,0.05
    Assyrian,2.07,2.56,1.17,2.33,8.03,30.86,40.41,8.76 ,3.07,0.08,0.03,0.07,0.16,0.36,0.03
    Azerbaijani,3.47,3.54,2,6.28,4.04,33.46,28.85,4.88 ,7.37,1.71,2.96,0.62,0.13,0.55,0.14
    Azeri_Dagestan,6.51,3.91,4.23,10.29,1.36,40.84,21. 57,1.4,6.51,0.56,1.57,0.95,0.03,0.07,0.2
    Chechen,9.62,5.63,6.53,10.7,0.39,47.61,9.97,1.08,4 .17,0.73,1.26,1.15,0.81,0.22,0.13
    Cypriot,1.62,5.28,3.93,0.33,17.7,20.13,45.02,5.01, 0.06,0.08,0.09,0.01,0.29,0.31,0.14
    Georgian_Jew,2.49,2.62,1.11,2.93,6.89,32,38.44,8.3 ,4.32,0.2,0.05,0.17,0.11,0.32,0.05
    Georgian_Laz,1.62,4.63,1.86,1.49,8.34,46.69,29.92, 3.4,1.44,0.21,0.03,0.1,0.08,0.06,0.13
    Greek_Trabzon,2.8,3.56,2.23,2.09,10.93,38.24,34.72 ,4.05,0.87,0.08,0.19,0.04,0.17,0,0.03
    Iranian_Bandari,1.78,1.31,1.4,8.3,0.18,32.18,20.9, 3.91,22.34,0,0,0.38,0.18,1.86,5.28
    Iranian_Jew,0.39,2.21,1.06,1.88,3.66,27.85,49.01,8 .04,4.66,0.14,0.27,0.08,0.16,0.48,0.11
    Iranian_Lur,0.66,1.38,2,7.03,2.65,34.5,32.28,6.67, 10.46,0.12,0.92,0.29,0.17,0.15,0.72
    Iranian_Mazandarani,1.18,1.09,0.56,9.32,0.59,37.46 ,31.63,3.66,11.57,0.04,0.97,0.49,0.37,0.36,0.71
    Iranian_Persian,4.07,0.35,1.22,7.61,1.15,33.42,29. 19,6.35,12.55,0.47,0.82,0.84,0.44,0.42,1.1
    Iraqi_Jew,0.42,1.04,0.33,0.96,3.55,26.66,55.6,8.19 ,2.6,0.11,0,0.08,0.25,0.21,0
    Jordanian,1.68,1.98,1.55,1.91,5.74,12.16,51.35,13. 85,1.42,0.54,0.46,0.12,0.3,4.54,2.4
    Kabardin,5.55,6.25,7.36,8.61,2.96,46.11,11.08,1.66 ,2.91,1.7,4.77,0.6,0.1,0,0.34
    Kumyk,8.63,5.88,4.52,11.73,1.29,44.23,12.43,0.73,3 .13,1.36,4.85,0.73,0.24,0.2,0.05
    Kurd,4.15,1.47,0.55,7.07,1.72,38.5,34.1,3.68,6.92, 0.18,0.57,0.43,0.16,0.18,0.34
    Kurdish_Jew,1.31,0.63,0.02,2.92,6.98,27.83,45.09,1 0.52,3.66,0.32,0.1,0.05,0.2,0.37,0
    Lebanese_Christian,1.21,4.18,1.26,0.63,11.53,21.37 ,46.73,10.66,0.7,0.24,0,0.03,0.26,1.2,0
    Lezgin,11.38,3.29,5.12,13.52,0,44.7,13.37,0.78,5.8 8,0.11,0.55,0.91,0.16,0.05,0.18
    Palestinian,1.51,5.44,0.63,0.04,10.05,17.54,44.11, 15.91,0.85,0.62,0.12,0.06,0.08,3,0.04
    Samaritan,0,5.29,0.66,0,12.08,16.67,46.12,15.8,0.1 9,0.15,0,0.02,0.17,2.85,0
    Syrian,3.1,4.72,1.81,1.6,7.92,19.93,37.09,13.2,2.4 8,0.36,0.2,0.11,0.41,4.9,2.17
    Turk_Meskhetian,3.24,2.65,2.33,3.73,6.59,47.19,27. 5,3.21,2.62,0.28,0.08,0.2,0.19,0.08,0.11
    Turkish_Adana,5.23,5.24,2.81,4.6,8.1,26.29,29.68,7 .05,4.29,0.96,3.66,0.37,0.36,0.98,0.38
    Turkish_Aydin,5.6,5.29,6.76,5.09,8.5,24.88,24.03,3 .96,1.75,3.9,7.99,0.98,0.44,0.69,0.14
    Turkish_Balikesir,8.79,6.4,3.95,6.54,9.57,22.99,21 .7,3.09,3.63,3.29,8.46,0.33,0.56,0.3,0.4
    Turkish_East,2.4,5.66,2.1,2.88,6.85,40.55,30.7,4.1 6,3.35,0.11,0.66,0.34,0.17,0.03,0.04
    Turkish_Kayseri,2.9,5.08,2.72,5.82,8.97,29.8,29.53 ,4.91,3.8,1.84,3.36,0.5,0.29,0.34,0.14
    Turkish_Trabzon,1.16,4.41,1.92,0.9,9.21,43.89,33.5 3,3.76,0.75,0.11,0.02,0.04,0.27,0,0.03


    Here you are.

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