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Thread: Genética de españoles e hispanoamericanos

  1. #5311
    Moleiros do Alto Dão Ruderico's Avatar
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    Quote Originally Posted by gixajo View Post
    I see it , your paper speaks about 2 routes of entry of Neolithic in Europe, with 3 fonal different clusters among which we are included in the same cluster with Sardinians and Frenchs(and...Sweden?).

    Yes, but these are exclusively ancient samples, not modern individuals. That said you can still see this difference in G25, Iberians strongly prefer Western EEFs (especially those from Iberia) than other Europeans do. My ancient models always benefit a lot from using Iberian EEF over Barcin or LBK.




    Edit: You can try splitting these into two different groups, odds are most of us here will massively prefer Iberia_EEF over LBK.
    Code:
    LBK:HUN_LBK_MN,0.123498,0.1807643,0.0126335,-0.0942352,0.0580878,-0.0403695,-0.0029375,-0.003,0.0397798,0.084603,0.008769,0.0125138,-0.02111,0.0004818,-0.042107,-0.0149492,0.01105,-0.0005382,0.012821,-0.0153825,-0.013757,0.0095827,-0.0092128,-0.0026512,-0.002934
    LBK:DEU_LBK_HBS,0.1244086,0.182592,0.0124072,-0.0896648,0.0641812,-0.0429073,-0.0036896,-0.0041883,0.0414365,0.0872364,0.0092805,0.0126936,-0.023927,0.0001514,-0.038877,-0.0078295,0.0197988,0.00515,0.0125886,-0.0122746,-0.0098015,0.0061826,-0.0089292,-0.0052416,-0.0037063
    LBK:DEU_LBK_KD,0.127482,0.183811,0.023381,-0.086564,0.079707,-0.043228,-0.010575,0.021691,0.052767,0.091118,0.011205,0.018583,-0.015461,-0.006881,-0.044109,-0.020419,0.002217,0.015836,0.015587,-0.021635,-0.004243,0.022999,-0.025882,0.010363,-0.002994
    LBK:DEU_LBK_SCH,0.1142784,0.1787332,0.0100314,-0.0908276,0.0607496,-0.0401042,0.000329,-0.0073844,0.0417638,0.0824072,0.009776,0.0103108,-0.0229828,0.0046242,-0.0385172,-0.0069476,0.018019,0.00451,0.0144304,-0.0110304,-0.0054652,0.0019288,-0.0053244,-0.0122186,-0.0034966
    LBK:DEU_LBK_SMH,0.1203421,0.1797025,0.015942,-0.0828642,0.0596754,-0.0407307,-0.0022112,-0.0044264,0.0449487,0.0840605,0.0068277,0.011417,-0.0237046,0.0007444,-0.03699,-0.0066837,0.0194035,0.0016067,0.0141925,-0.0104368,-0.0090976,0.0036702,-0.0058822,-0.0043379,-0.0037395
    LBK:DEU_LBK_UW,0.129758,0.178733,0.01961,-0.081719,0.068013,-0.042949,-0.00282,-0.006692,0.037837,0.082553,0.002923,0.019033,-0.022002,0.006193,-0.042616,-0.006762,0.026859,0.006841,0.015209,-0.008254,-0.015972,0.016075,0.000493,-0.005904,-0.007784
    LBK:AUT_LBK_N,0.1220754,0.1839379,0.015792,-0.0885424,0.0642426,-0.0428098,-0.0023206,-0.0037789,0.0449952,0.0860381,0.0079368,0.0105094,-0.0204036,0.0025289,-0.0382054,-0.0129606,0.0148475,0.0011245,0.0146436,-0.0096453,-0.006738,0.0098304,-0.0058542,-0.0064919,-0.0058527
    Iberia_EEF:Iberia_Southwest_EN,0.129758,0.165531,0.043369,-0.062662,0.080015,-0.031515,-0.012456,0.007846,0.069129,0.094763,0.003735,0.018733,-0.031665,-0.006055,-0.016558,-0.013789,-0.004042,0.010262,0.007039,-0.009755,0.001373,0.001237,-0.016638,-0.015183,0.002874
    Iberia_EEF:Iberia_Southwest_MLN,0.1225493,0.1648543,0.0487743,-0.041021,0.085452,-0.0256577,-0.004935,-0.0016923,0.065993,0.093001,0.002057,0.0125387,-0.0256193,-0.0159183,-0.0060623,0.0037567,0.012517,0.0048143,0.000545,-0.003585,0.016596,0.0056057,-0.0175427,-0.0430987,0.000359
    Iberia_EEF:Iberia_Southeast_MLN,0.1261811,0.1677073,0.0457934,-0.042959,0.0838399,-0.0274906,-0.0071173,-0.0006594,0.0686909,0.0943201,0.0008583,0.0181337,-0.0329389,-0.0142144,-0.0076001,-0.0033906,0.0013783,0.002968,0.0018857,-0.0046451,0.0077719,0.0038863,-0.0161279,-0.037768,0.0005473
    Iberia_EEF:Iberia_North_MLN,0.1300429,0.1642619,0.069296,-0.0196222,0.0942868,-0.0192784,-0.0060512,0.0041826,0.0651152,0.0902069,-0.0032476,0.0134692,-0.0308842,-0.0175298,-0.0036982,0.0054198,0.008263,0.0004276,0.0001414,-0.0005314,0.0160184,0.0039721,-0.0140041,-0.0431538,0.0040265
    Iberia_EEF:Iberia_Northeast_MLN,0.1258561,0.1704637,0.0529047,-0.039406,0.0901707,-0.0212354,-0.0049016,0.0039559,0.0634316,0.0944244,-0.0020646,0.0167853,-0.0307091,-0.0175763,-0.005138,0.0010987,0.0051967,0.0032034,-0.0005209,-0.004127,0.0115331,0.0051229,-0.0170083,-0.0366319,0.0007699
    Iberia_EEF:Iberia_MN,0.1212218,0.1627387,0.0523252,-0.033592,0.0853235,-0.0214745,-0.0098702,-0.0010385,0.0643228,0.0923028,-0.003004,0.0138628,-0.032854,-0.0157232,-0.0081772,-0.0003315,0.0109522,0.004244,-0.001257,-0.00544,0.0181868,0.0046368,-0.0155598,-0.0405782,0.0024248
    Iberia_EEF:Iberia_N,0.1239407,0.1755737,0.0341921,-0.0626261,0.0768007,-0.0339317,-0.004439,-0.0011793,0.0618117,0.0996021,0.0021292,0.015586,-0.0343077,-0.0108723,-0.0189858,-0.0058929,0.0074029,0.001844,0.0048463,-0.0070036,0.002468,0.0035996,-0.008148,-0.0235909,9.3e-05
    Yamnaya_RUS_Samara,0.1255849,0.089028,0.0426986,0.1153479,-0.0287232,0.0450564,0.0036033,-0.0025642,-0.0559032,-0.0728943,0.0018222,3.32e-05,-0.0026924,-0.0233041,0.0366141,0.0157633,-0.0012316,-0.0017879,-0.0038408,0.0137704,-0.0031749,0.0007557,0.0110649,0.0186102,-0.004537
    WHG,0.1246365,0.116278,0.184789,0.189279,0.1546445,0.0464355,0.0131605,0.0372675,0.0890705,0.017768,-0.0153455,-0.015811,0.0159065,-0.0030275,0.053338,0.0582065,0.00502,0.016343,-0.0093015,0.055589,0.0944585,0.0111905,-0.049607,-0.160866,0.0170045
    MAR_EN,-0.1735805,0.0919055,-0.0258325,-0.083657,0.0283125,-0.0596825,-0.079316,0.021461,0.1500185,0.0043735,0.0222475,-0.0264515,0.075148,-0.0461725,0.069353,-0.03381,0.0171455,-0.05549,-0.1487635,0.0340785,-0.038245,-0.118212,0.0826995,-0.009941,0.021615
    Levant_Natufian,0.020488,0.1431895,-0.0377125,-0.1387295,0.030775,-0.079484,-0.025616,-0.0175375,0.114329,0.002005,0.0332085,-0.0222555,0.076486,0.002133,0.0153365,0.009016,-0.0154505,-0.001014,-0.02206,0.040832,0.001497,0.0001235,-0.003636,-0.0044585,0.006287
    Last edited by Ruderico; 05-20-2022 at 08:34 PM.
    Ó, anciã, Mãe! Nossa mágoa é eterna
    Foste esquecida, perdida
    Vossa glória, vossa honra, banida
    Mas vosso canto prevalece no fogo e na névoa agreste.
    Destronada e abandonada,
    Por bastardos humilhada,
    Ao esquecimento lançada.
    Global25 PCA West Eurasia dataset close up plot

  2. #5312
    Alma portuguesa Damião de Góis's Avatar
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    Quote Originally Posted by Ruderico View Post
    These aren't Iron Age at all, they postdate Romans by at ~500 years, the IA label is exclusively used for pre-Roman samples. Roman samples from Urbino are closer in time to the Roman conquest and they already show a completely East Med profile because of colonisation. You could likewise say North African and East Med ancestry was already present in "Portugal" in the "Iron Age".
    That's like getting a genetic sample from a modern Brazilian and saying the indigenous people pre-1500 already had European ancestry.

    PS: We have two samples from ~800BC from nearby (Arrifana, Coimbra). And yes, they are Basque-like. One appears to have steppe similar to modern individuals, the other one only 2/3s of that. That said the samples are of poor quality.


    I suggest you look into qpAdm models made for modern and IA Iberians in "Large-scale migration into Britain during the Middle to Late Bronze Age"
    https://reich.hms.harvard.edu/sites/...ipt_2021_3.pdf

    The bulk of ancient IA Iberians has similar levels steppe ancestry in 3-way models to Basques, but usually less than the average non-Basque Spanish. The exception are IA samples from Cataluña, particularly Girona which is close to the French border, plenty of which have similar or suprior levels to modern Spanish. Obviously the vector for steppe ancestry in Iberia is through the Pyrenees, it's not surprising pre-Romans from that area are showing higher levels than those further away.

    Quote Originally Posted by Ajeje Brazorf View Post
    Earliest Portuguese sample is dated to around 337 AD. One problem with this paper is that they talk about the Iron Age and when the vast majority of samples are from the Roman period.

    Eurogenes K13

    Code:
    Portugal_Conimbriga:R10487___AD_337___Coverage_66.13%,38.73,16.47,28.87,2.20,9.76,0.72,1.13,0,0.20,0,0.20,1.69,0.03
    Portugal_Miroico:R10499___AD_331___Coverage_81.68%,35,10.38,32.24,1.54,18.69,1.46,0,0.69,0,0,0,0,0
    Portugal_Miroico:R10501___AD_426___Coverage_64.40%,34.31,10.92,27.09,3.01,15.41,2.89,1.91,1.05,0.54,0.23,0.06,0.76,1.82
    Portugal_Miroico:R10502___AD_426___Coverage_71.97%,34.91,10.53,26.33,2.91,15.51,5.11,0.03,0.19,0,0.23,1.41,1.40,1.45
    Portugal_Miroico:R10503___AD_518___Coverage_88.61%,26.55,5.38,27.92,0,17.32,10.84,0.01,0,0.76,0.74,0.46,5.27,4.75
    Portugal_Miroico:R10507___AD_426___Coverage_50.92%,38.63,11.65,31.01,0.01,9.03,4.08,0.01,0.65,0,1.61,0,1.86,1.49
    Portugal_Miroico:R10508___AD_337___Coverage_66.89%,34.88,7.41,31.31,2.22,15.35,5.34,0,0.10,0,0.09,0.98,0.88,1.44
    SAMPLE DATE COVERAGE LATITUDE LONGITUDE LOCALITY COUNTRY
    R10499 331 81,68% 38,7261 -9,3653 Miroico Portugal
    R10508 337 66,89% 38,7261 -9,3653 Miroico Portugal
    R10487 337 66,13% 40,099444 -8,490556 Conimbriga Portugal
    R10488 337 57,83% 40,099444 -8,490556 Conimbriga Portugal
    R10500 426 53,65% 38,7261 -9,3653 Miroico Portugal
    R10501 426 64,40% 38,7261 -9,3653 Miroico Portugal
    R10502 426 71,97% 38,7261 -9,3653 Miroico Portugal
    R10506 426 77,69% 38,7261 -9,3653 Miroico Portugal
    R10507 426 50,92% 38,7261 -9,3653 Miroico Portugal
    R10503 518 88,61% 38,7261 -9,3653 Miroico Portugal
    R10494 781 86,54% 38,8803 -7,1637 MontedaNora Portugal
    R10496 829 85,03% 38,8803 -7,1637 MontedaNora Portugal
    R10491 832 82,74% 38,8803 -7,1637 MontedaNora Portugal
    Yes i see i made a mistake, i may have been misguided by the study's name. Either way these don't look like roman soldiers and i don't know which sorts of mixes would turn a basque into those samples. I would still guess they shouldn't diverge that much from the original source. If everyone everywhere was basque before the romans, i would be curious to know what was the process that changed people from basques to what we are now.

    @Ajeje Brazorf, thanks for extracting information on these samples btw.

    Quote Originally Posted by Ruderico View Post
    Until there is a significant number of pre-Roman samples from further west that unequivocally show high levels of steppe ancestry and north African ancestry no one can contradict Olalde's statement. For the time being it does seem your high steppe ancestry is not because of indigenous western Iberians, but from colonists who made their way here after the Roman conquest. Likewise for the non-West Euro things we all carry.
    https://i.postimg.cc/tg31S1qD/sadsadsad.png
    Where would you guess the colonists to be from? I don't think Y-DNA in Portugal reflects any sort of those movements.

  3. #5313
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    Quote Originally Posted by gixajo View Post
    Se me ocurren muchas posibles razones, porque en realidad no lo sé.

    Realmente los que habría que quitar son los que sean de después del 711, independientemente de que ploteen un poco raros, o tanto los que ploteen rarunos como los de fechas posteriores al 711.

    Pero bueno, para ir divirtiéndonos, con el primer average que hiciste:

    Code:
    West_Iberia_LIA,0.0992,0.146075,0.0342125,-0.013775,0.0435625,-0.008375,-0.00425,0.0018625,0.0261125,0.0337625,-0.0008375,0.00565,-0.0100625,-0.009275,0.0043125,-0.000775,0.0016,-0.0030875,-0.0039,-0.000925,0.000125,-0.002825,0.0002125,-0.0061125,-0.0003875
    North_Iberia_IA,0.125205,0.1431895,0.065053,0.0114665,0.058011,0.003347,-0.0034075,0.0045,0.026077,0.034989,-0.002192,0.0088425,-0.0169475,-0.0085325,0.0107215,6.65e-05,-0.008279,0.0008865,-0.000126,-0.00075,0.0082355,0.0023495,-0.0070865,-0.0118085,-0.0061075
    North_Iberia_LIA,0.1257745,0.155376,0.0631675,0.005814,0.052933,-0.000697,-0.001175,0.0074995,0.032826,0.0429165,-0.0010555,0.008842,-0.0237115,-0.0187855,0.013572,0.0043755,-0.004759,0.0051945,-0.0022625,-0.0090665,0.0131645,0.000371,-0.0077645,-0.0163875,-0.000778
    Northeast_Iberia_LIA,0.122929,0.1412094,0.0456504,0.018411,0.0412382,0.0034167,0.0027378,0.0059997,0.0162905,0.019244,-0.0069746,0.0078154,-0.0095364,-0.0064202,0.009161,0.0037191,-0.0010755,0.0039592,-0.0010431,0.0037894,0.0030444,0.0005132,-0.0041782,0.0024823,-0.0025866
    EL NE_Iberia_LIA son el NE_Iberia son dos averages, el NE_Iberia(6CE)+NE_Iberia(6-8CE), sería equiparable al tuyo, porque mezcla de justo antes del 711, y de un poco después, pero ha sido un modelito apresurado.
    A mi se me ocurren solo dos. Una que las muestras sean de sitios muy específicos y poco representativos, y la otra es que en ese periodo se estuviese experimentando un cambio demográfico razonablemente grande a causa de una gran inmigración.
    Si estas muestras son representativas, los "outliers" serian bastante comunes (aunque como bien dices, hay que separarlas por épocas)

  4. #5314
    Moleiros do Alto Dão Ruderico's Avatar
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    Quote Originally Posted by Damião de Góis View Post
    Where would you guess the colonists to be from? I don't think Y-DNA in Portugal reflects any sort of those movements.
    It does though, yDNA used to be overwhelmingly R1b in the past, today it's at ~55% and part of those should have their origins abroad (although some non-R1b might be local as well), I think this really does suggest that there was a massive turnover in Iberia starting with Roman occupation.

    I have no idea why, but as I said in AG my suspicion lies with the abundance of mines in Iberia, maybe the Romans needed a lot of manpower to operate them and resorted to people (and slaves) from surrounding areas such as Mauritania and Gaul, in addition to Imperial Romans who colonised the territory. The famous Seventh Legion, which spent centuries in northwestern Iberia, also had Gallic auxiliaries, maybe some of them ended up settling in Hispania after they were released from service. Just speculation, they may be totally irrelevant.





    I still find it hard to believe the Germanic period isn't necessary to explain some of these changes though, in the end with the exception of two samples (R10487 and R10507) all of these seem very Mediterranean. That said we haven't seen samples from Roman Braga, which should theoretically more important for Portuguese (and Galician) ethnogenesis, maybe one day we'll have them and this Mediterranean profile will end up being less common, with the majority of samples closer to us. Or maybe not, who knows.
    Ó, anciã, Mãe! Nossa mágoa é eterna
    Foste esquecida, perdida
    Vossa glória, vossa honra, banida
    Mas vosso canto prevalece no fogo e na névoa agreste.
    Destronada e abandonada,
    Por bastardos humilhada,
    Ao esquecimento lançada.
    Global25 PCA West Eurasia dataset close up plot

  5. #5315
    Alma portuguesa Damião de Góis's Avatar
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    Quote Originally Posted by Ruderico View Post

    Edit: You can try splitting these into two different groups, odds are most of us here will massively prefer Iberia_EEF over LBK.

    Target: Gil_Vicente
    Distance: 2.9547% / 0.02954739
    37.2 Yamnaya_RUS_Samara
    30.8 Iberia_EEF
    25.8 LBK
    6.2 MAR_EN

  6. #5316
    Moleiros do Alto Dão Ruderico's Avatar
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    Quote Originally Posted by Damião de Góis View Post
    Target: Gil_Vicente
    Distance: 2.9547% / 0.02954739
    37.2 Yamnaya_RUS_Samara
    30.8 Iberia_EEF
    25.8 LBK
    6.2 MAR_EN
    Yeah I was expecting something like that from you because of all the steppe you have, I barely score LBK

    Target: Ruderico_scaled
    Distance: 3.4848% / 0.03484773
    52.6 Iberia_EEF
    32.2 Yamnaya_RUS_Samara
    8.6 LBK
    6.6 MAR_EN



    Target: MrsRuderico_scaled
    Distance: 2.1762% / 0.02176182
    49.2 Iberia_EEF
    32.8 Yamnaya_RUS_Samara
    9.6 LBK
    6.8 MAR_EN
    1.6 Levant_Natufian
    Last edited by Ruderico; 05-21-2022 at 12:13 PM.
    Ó, anciã, Mãe! Nossa mágoa é eterna
    Foste esquecida, perdida
    Vossa glória, vossa honra, banida
    Mas vosso canto prevalece no fogo e na névoa agreste.
    Destronada e abandonada,
    Por bastardos humilhada,
    Ao esquecimento lançada.
    Global25 PCA West Eurasia dataset close up plot

  7. #5317
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    Quote Originally Posted by Ruderico View Post
    Yes, but these are exclusively ancient samples, not modern individuals. That said you can still see this difference in G25, Iberians strongly prefer Western EEFs (especially those from Iberia) than other Europeans do. My ancient models always benefit a lot from using Iberian EEF over Barcin or LBK.




    Edit: You can try splitting these into two different groups, odds are most of us here will massively prefer Iberia_EEF over LBK.
    Code:
    LBK:HUN_LBK_MN,0.123498,0.1807643,0.0126335,-0.0942352,0.0580878,-0.0403695,-0.0029375,-0.003,0.0397798,0.084603,0.008769,0.0125138,-0.02111,0.0004818,-0.042107,-0.0149492,0.01105,-0.0005382,0.012821,-0.0153825,-0.013757,0.0095827,-0.0092128,-0.0026512,-0.002934
    LBK:DEU_LBK_HBS,0.1244086,0.182592,0.0124072,-0.0896648,0.0641812,-0.0429073,-0.0036896,-0.0041883,0.0414365,0.0872364,0.0092805,0.0126936,-0.023927,0.0001514,-0.038877,-0.0078295,0.0197988,0.00515,0.0125886,-0.0122746,-0.0098015,0.0061826,-0.0089292,-0.0052416,-0.0037063
    LBK:DEU_LBK_KD,0.127482,0.183811,0.023381,-0.086564,0.079707,-0.043228,-0.010575,0.021691,0.052767,0.091118,0.011205,0.018583,-0.015461,-0.006881,-0.044109,-0.020419,0.002217,0.015836,0.015587,-0.021635,-0.004243,0.022999,-0.025882,0.010363,-0.002994
    LBK:DEU_LBK_SCH,0.1142784,0.1787332,0.0100314,-0.0908276,0.0607496,-0.0401042,0.000329,-0.0073844,0.0417638,0.0824072,0.009776,0.0103108,-0.0229828,0.0046242,-0.0385172,-0.0069476,0.018019,0.00451,0.0144304,-0.0110304,-0.0054652,0.0019288,-0.0053244,-0.0122186,-0.0034966
    LBK:DEU_LBK_SMH,0.1203421,0.1797025,0.015942,-0.0828642,0.0596754,-0.0407307,-0.0022112,-0.0044264,0.0449487,0.0840605,0.0068277,0.011417,-0.0237046,0.0007444,-0.03699,-0.0066837,0.0194035,0.0016067,0.0141925,-0.0104368,-0.0090976,0.0036702,-0.0058822,-0.0043379,-0.0037395
    LBK:DEU_LBK_UW,0.129758,0.178733,0.01961,-0.081719,0.068013,-0.042949,-0.00282,-0.006692,0.037837,0.082553,0.002923,0.019033,-0.022002,0.006193,-0.042616,-0.006762,0.026859,0.006841,0.015209,-0.008254,-0.015972,0.016075,0.000493,-0.005904,-0.007784
    LBK:AUT_LBK_N,0.1220754,0.1839379,0.015792,-0.0885424,0.0642426,-0.0428098,-0.0023206,-0.0037789,0.0449952,0.0860381,0.0079368,0.0105094,-0.0204036,0.0025289,-0.0382054,-0.0129606,0.0148475,0.0011245,0.0146436,-0.0096453,-0.006738,0.0098304,-0.0058542,-0.0064919,-0.0058527
    Iberia_EEF:Iberia_Southwest_EN,0.129758,0.165531,0.043369,-0.062662,0.080015,-0.031515,-0.012456,0.007846,0.069129,0.094763,0.003735,0.018733,-0.031665,-0.006055,-0.016558,-0.013789,-0.004042,0.010262,0.007039,-0.009755,0.001373,0.001237,-0.016638,-0.015183,0.002874
    Iberia_EEF:Iberia_Southwest_MLN,0.1225493,0.1648543,0.0487743,-0.041021,0.085452,-0.0256577,-0.004935,-0.0016923,0.065993,0.093001,0.002057,0.0125387,-0.0256193,-0.0159183,-0.0060623,0.0037567,0.012517,0.0048143,0.000545,-0.003585,0.016596,0.0056057,-0.0175427,-0.0430987,0.000359
    Iberia_EEF:Iberia_Southeast_MLN,0.1261811,0.1677073,0.0457934,-0.042959,0.0838399,-0.0274906,-0.0071173,-0.0006594,0.0686909,0.0943201,0.0008583,0.0181337,-0.0329389,-0.0142144,-0.0076001,-0.0033906,0.0013783,0.002968,0.0018857,-0.0046451,0.0077719,0.0038863,-0.0161279,-0.037768,0.0005473
    Iberia_EEF:Iberia_North_MLN,0.1300429,0.1642619,0.069296,-0.0196222,0.0942868,-0.0192784,-0.0060512,0.0041826,0.0651152,0.0902069,-0.0032476,0.0134692,-0.0308842,-0.0175298,-0.0036982,0.0054198,0.008263,0.0004276,0.0001414,-0.0005314,0.0160184,0.0039721,-0.0140041,-0.0431538,0.0040265
    Iberia_EEF:Iberia_Northeast_MLN,0.1258561,0.1704637,0.0529047,-0.039406,0.0901707,-0.0212354,-0.0049016,0.0039559,0.0634316,0.0944244,-0.0020646,0.0167853,-0.0307091,-0.0175763,-0.005138,0.0010987,0.0051967,0.0032034,-0.0005209,-0.004127,0.0115331,0.0051229,-0.0170083,-0.0366319,0.0007699
    Iberia_EEF:Iberia_MN,0.1212218,0.1627387,0.0523252,-0.033592,0.0853235,-0.0214745,-0.0098702,-0.0010385,0.0643228,0.0923028,-0.003004,0.0138628,-0.032854,-0.0157232,-0.0081772,-0.0003315,0.0109522,0.004244,-0.001257,-0.00544,0.0181868,0.0046368,-0.0155598,-0.0405782,0.0024248
    Iberia_EEF:Iberia_N,0.1239407,0.1755737,0.0341921,-0.0626261,0.0768007,-0.0339317,-0.004439,-0.0011793,0.0618117,0.0996021,0.0021292,0.015586,-0.0343077,-0.0108723,-0.0189858,-0.0058929,0.0074029,0.001844,0.0048463,-0.0070036,0.002468,0.0035996,-0.008148,-0.0235909,9.3e-05
    Yamnaya_RUS_Samara,0.1255849,0.089028,0.0426986,0.1153479,-0.0287232,0.0450564,0.0036033,-0.0025642,-0.0559032,-0.0728943,0.0018222,3.32e-05,-0.0026924,-0.0233041,0.0366141,0.0157633,-0.0012316,-0.0017879,-0.0038408,0.0137704,-0.0031749,0.0007557,0.0110649,0.0186102,-0.004537
    WHG,0.1246365,0.116278,0.184789,0.189279,0.1546445,0.0464355,0.0131605,0.0372675,0.0890705,0.017768,-0.0153455,-0.015811,0.0159065,-0.0030275,0.053338,0.0582065,0.00502,0.016343,-0.0093015,0.055589,0.0944585,0.0111905,-0.049607,-0.160866,0.0170045
    MAR_EN,-0.1735805,0.0919055,-0.0258325,-0.083657,0.0283125,-0.0596825,-0.079316,0.021461,0.1500185,0.0043735,0.0222475,-0.0264515,0.075148,-0.0461725,0.069353,-0.03381,0.0171455,-0.05549,-0.1487635,0.0340785,-0.038245,-0.118212,0.0826995,-0.009941,0.021615
    Levant_Natufian,0.020488,0.1431895,-0.0377125,-0.1387295,0.030775,-0.079484,-0.025616,-0.0175375,0.114329,0.002005,0.0332085,-0.0222555,0.076486,0.002133,0.0153365,0.009016,-0.0154505,-0.001014,-0.02206,0.040832,0.001497,0.0001235,-0.003636,-0.0044585,0.006287
    I believe you, don´t worry, I was just explainning why I did what I did.

    Anyway,even getting better distances with Iberia_EEF, WHG practically dissappears and some strange Natufian apperas in my results.

    With Iberia_EEF

    Target: gixajo_scaled
    Distance: 2.2414% / 0.02241432

    61.4 Iberia_EEF
    34.2 Yamnaya_RUS_Samara
    3.6 Levant_Natufian
    0.8 MAR_EN

    Target: gixajo_dad_scaled
    Distance: 2.3139% / 0.02313912

    63.0 Iberia_EEF
    32.4 Yamnaya_RUS_Samara
    3.4 MAR_EN
    1.2 Levant_Natufian

    Target: gixajo_mom_scaled
    Distance: 2.7161% / 0.02716124

    61.2 Iberia_EEF
    34.6 Yamnaya_RUS_Samara
    2.8 WHG
    1.4 MAR_EN
    With LBKs

    Target: gixajo_scaled
    Distance: 3.0693% / 0.03069291

    55.4 LBK
    31.2 Yamnaya_RUS_Samara
    10.4 WHG
    3.0 MAR_EN

    Target: gixajo_dad_scaled
    Distance: 2.7760% / 0.02776006

    58.8 LBK
    29.2 Yamnaya_RUS_Samara
    7.2 WHG
    4.8 MAR_EN

    Target: gixajo_mom_scaled
    Distance: 3.5820% / 0.03582031

    52.6 LBK
    32.6 Yamnaya_RUS_Samara
    11.8 WHG
    3.0 MAR_EN
    With both at the same time, as you said, algortim prefers Iberia_EEf as solution:

    Target: gixajo_scaled
    Distance: 2.2491% / 0.02249126

    53.0 Iberia_EEF
    34.0 Yamnaya_RUS_Samara
    10.4 LBK
    2.2 MAR_EN
    0.4 WHG

    Target: gixajo_dad_scaled
    Distance: 2.1401% / 0.02140143

    40.2 Iberia_EEF
    31.4 Yamnaya_RUS_Samara
    24.0 LBK
    4.4 MAR_EN

    Target: gixajo_mom_scaled
    Distance: 2.6947% / 0.02694653

    53.4 Iberia_EEF
    34.4 Yamnaya_RUS_Samara
    7.0 LBK
    3.6 WHG
    1.6 MAR_EN
    And again, when I post that model using LBK, the model was for every European, not just for Iberians, so probably what I did was better option because our Iberian_EEF could have created "interferences" reading the Neolithic+WHG of Northern Europeans as Iberia_EEF.

    For example:

    Target: Norwegian
    Distance: 3.4021% / 0.03402114

    52.6 Yamnaya_RUS_Samara
    24.8 Iberia_EEF
    12.8 LBK
    9.8 WHG

    Target: German
    Distance: 2.8730% / 0.02873033

    49.0 Yamnaya_RUS_Samara
    30.0 LBK
    12.4 Iberia_EEF
    8.6 WHG

    Target: English
    Distance: 3.2677% / 0.03267709

    50.2 Yamnaya_RUS_Samara
    29.8 Iberia_EEF
    12.6 LBK
    7.4 WHG
    Last edited by gixajo; 05-20-2022 at 10:17 PM.

  8. #5318
    Moleiros do Alto Dão Ruderico's Avatar
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    Yeah it's all as expected, particularly your mum benefiting even more from the Iberian EEF references.
    It's interesting that using Iberian EEFs is making steppe ancestry higher than using LBK, I have no idea why the algorithm does this, nor if it's any more valid.
    Ó, anciã, Mãe! Nossa mágoa é eterna
    Foste esquecida, perdida
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    Mas vosso canto prevalece no fogo e na névoa agreste.
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    Ao esquecimento lançada.
    Global25 PCA West Eurasia dataset close up plot

  9. #5319
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    Target: Viriato_scaled
    Distance: 2.7569% / 0.02756924
    46.0 Iberia_EEF
    34.2 Yamnaya_RUS_Samara
    12.6 LBK
    6.0 MAR_EN
    1.2 WHG

    Target: Viriato_Wife_scaled
    Distance: 2.5882% / 0.02588185
    46.2 Iberia_EEF
    34.4 Yamnaya_RUS_Samara
    11.8 LBK
    6.2 MAR_EN
    1.4 Levant_Natufian

    Target: Viriato_Father_scaled
    Distance: 1.5579% / 0.01557927
    38.0 Yamnaya_RUS_Samara
    30.2 LBK
    25.4 Iberia_EEF
    6.2 MAR_EN
    0.2 WHG
    YDNA: R1b-L21 > DF13 > S1051 > FGC17906 > FGC17907 > FGC17866


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    Quote Originally Posted by Ruderico View Post
    Yeah it's all as expected, particularly your mum benefiting even more from the Iberian EEF references.
    It's interesting that using Iberian EEFs is making steppe ancestry higher than using LBK, I have no idea why the algorithm does this, nor if it's any more valid.
    Maybe using unscaled coordinates with some penalization could give more stable or accurate results.

    Anyway, all those papers don´t use G25 to show their samples genetic admixtures (as far as I know), so it´s difficult to get exactly all those results with our models.

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