Genética de españoles e hispanoamericanos

[gixajo]

Target: Juan_scaled

[B]Target: Xabier_scaled

¿Cómo las véis por ahora?

¿Alguna sugerencia o consejo?

¿Tiran mucho al oeste o vuestros resultados son razonables?

¿Estáis haciendo samples como locos y por eso no decís nada?

[mitalit]

En mi caso mucho al este

[Defcon2]

¿Cómo las véis por ahora?

¿Alguna sugerencia o consejo?

¿Tiran mucho al oeste o vuestros resultados son razonables?

¿Estáis haciendo samples como locos y por eso no decís nada?

De qué se compone East_Iberia_A? está lejos en todas las medias.

[Damião de Góis]

La media de Portugal con +10 muestras portuguesas de mi cosecha, pongo la oficial para comparar también.

Portugal_Ultimate,0.10491229,0.1446694,0.03606354,-0.0036822,0.04197691,-0.00343431,-0.0041562,0.00303937,0.025209,0.0294806,-0.00129909,0.00689394,-0.01227091,-0.0120794,0.01173009,-0.00078417,-0.00241017,-0.00079277,-0.0049274,-0.00110409,0.00114794,-0.00272034,0.00112334,-0.00182806,-0.00061237
Portuguese,0.1061741,0.1446114,0.0360075,-0.0044316,0.042137,-0.0040494,-0.0037412,0.0027598,0.0255982,0.029741,-0.000734,0.0074214,-0.0127373,-0.0112631,0.0125568,-0.0003978,-0.0011316,-0.0008869,-0.005762,-0.0002452,0.0011379,-0.002572,0.0013015,-0.0011326,-0.0001053

Distance to: Gil_Vicente
0.02400016 Portugal_Ultimate
0.02597823 Portuguese

Bueno, éstas son los samples que hice:

Basque_A,0.129400,0.151363,0.056592,0.009969,0.055369,0.001684,-0.001497,0.002219,0.029901,0.042217,-0.006567,0.010430,-0.021605,-0.014950,0.016526,-0.000228,-0.010023,0.002891,-0.000104,-0.003690,0.008894,0.000847,-0.007353,-0.008318,0.004371
Basque_B,0.129980,0.151218,0.056729,0.010916,0.056997,0.001317,-0.002363,0.001867,0.030979,0.043402,-0.006901,0.010974,-0.021877,-0.016393,0.015582,0.000896,-0.008863,0.002900,-0.001266,-0.002242,0.009474,0.002486,-0.007764,-0.009103,0.004721
Western_Iberia_A,0.105635,0.147286,0.034534,-0.002808,0.083067,-0.003419,-0.003868,0.011839,0.025139,0.030482,-0.001017,0.006233,-0.011671,-0.011756,0.010056,0.001105,-0.001739,-0.002090,-0.006086,0.0000860,0.0016300,-0.0036560,-0.0000890,-0.0019520,0.000666
Western_Iberia_B,0.1059749,0.14389121,0.03570005,-0.00442911,0.0411317,-0.00399821,-0.00373312,0.0027618,0.0249777,0.0283415,-0.0007001,0.00755231,-0.01198001,-0.0111856,0.0124442,-0.0004008,-0.00113155,-0.000910169,-0.0058101,-0.000245201,0.00113802,-0.00256878,0.00130049,-0.00113333,-0.00009061
Western_Iberia_C,0.102371,0.14599836,0.03839654,-0.001609,0.03899084,-0.00194992,-0.00259015,0.00669191,0.02371925,0.0289806,-0.00097474,0.0046501,-0.009812,-0.00449542,0.01059016,-0.008751,-0.0151195,0.0007601,-0.00553231,-0.00175110,0.0043702,-0.00123745,0.0030881,-0.00549543,0.00319898
Western_Iberia_D,0.102441,0.145094,0.036345,-0.001454,0.039276,-0.000802,-0.002850,0.000692,0.026026,0.031231,-0.002395,0.008542,-0.011354,-0.011526,0.010943,-0.004293,-0.007383,-0.000350,-0.006128,-0.004971,0.002308,-0.003849,0.000786,-0.003223,0.00000102
Western_Iberia_E,0.09898026,0.14598236,0.03170178,0.001938,0.03908402,-0.00140014,-0.0042311,-0.00323121,0.024499543,0.03479807,-0.001624,0.008692,-0.01169744,-0.01623922,0.00778872,-0.000265,-0.001825,-0.0019001,-0.007416,-0.001982751,0.005004991,-0.00531731,-0.0016925,-0.00011992,0.00199936
East_Iberia_B,0.116763,0.145573,0.040169,-0.000895,0.043895,-0.001604,-0.001487,0.000867,0.022104,0.030804,-0.002591,0.006740,-0.014299,-0.011302,0.007289,0.000120,-0.000935,0.000312,-0.000230,-0.000542,0.004739,-0.000805,-0.001543,-0.002186,0.000788
East_Iberia_A,0.120007,0.145737,0.082263,-0.001316,0.089309,-0.002924,-0.001069,0.003079,0.020969,0.033103,-0.003142,0.008077,-0.014740,-0.011730,0.009619,-0.002122,-0.004994,-0.001202,-0.000417,-0.000296,0.004234,-0.000314,-0.002809,-0.005270,0.000381
East_Iberia_C,0.116199,0.1470133,0.042622,-0.0028219,0.0400251,-0.0022293,-0.00053853,0.002461301,0.0193323,0.02958292,-0.0046045,0.0081411,-0.0148759,-0.01261152,0.0044135,0.0023003,0.0020513,0.00104947,0.00114143,-0.0044522,0.0004899,0.0006302,0.00123331,0.000321688,-0.00412023

Distance to: Gil_Vicente
0.02045359 Western_Iberia_D
0.02208195 Western_Iberia_C
0.02399141 Western_Iberia_E
0.02566567 Western_Iberia_B
0.02978024 East_Iberia_B
0.03276361 East_Iberia_C
0.04887581 Western_Iberia_A
0.05132245 Basque_A
0.05362066 Basque_B
0.07489367 East_Iberia_A

Target: Gil_Vicente
Distance: 1.8732% / 0.01873242
54.6 Western_Iberia_C
41.8 Western_Iberia_E
3.6 Western_Iberia_A


Para mim as distâncias estão melhores do que as que tenho na datasheet actual do eurogenes:

Distance to: Gil_Vicente
0.02256008 Spanish_Andalucia
0.02488614 Spanish_Extremadura
0.02507821 Spanish_Galicia
0.02589305 Spanish_Alacant
0.02597823 Portuguese
0.02627439 Spanish_Castilla_Y_Leon

[gixajo]

Nueva de East iberian, para compensar:

Eastern_Iberia_D,0.118623,0.146511,0.040830,-0.000864,0.044471,-0.001771,-0.001364,0.001725,0.022721,0.032378,-0.002682,0.006962,-0.014377,-0.011684,0.007179,-0.000780,-0.001410,0.000075,-0.001211,-0.000411,0.003582,-0.000496,-0.002138,-0.003820,0.001196

[gixajo]

Creo que en 0.25X funciona mejor:

Basque_A,0.129400,0.151363,0.056592,0.009969,0.055369,0.001684,-0.001497,0.002219,0.029901,0.042217,-0.006567,0.010430,-0.021605,-0.014950,0.016526,-0.000228,-0.010023,0.002891,-0.000104,-0.003690,0.008894,0.000847,-0.007353,-0.008318,0.004371
Basque_B,0.129980,0.151218,0.056729,0.010916,0.056997,0.001317,-0.002363,0.001867,0.030979,0.043402,-0.006901,0.010974,-0.021877,-0.016393,0.015582,0.000896,-0.008863,0.002900,-0.001266,-0.002242,0.009474,0.002486,-0.007764,-0.009103,0.004721
Western_Iberia_A,0.105635,0.147286,0.034534,-0.002808,0.083067,-0.003419,-0.003868,0.011839,0.025139,0.030482,-0.001017,0.006233,-0.011671,-0.011756,0.010056,0.001105,-0.001739,-0.002090,-0.006086,0.0000860,0.0016300,-0.0036560,-0.0000890,-0.0019520,0.000666
Western_Iberia_B,0.1059749,0.14389121,0.03570005,-0.00442911,0.0411317,-0.00399821,-0.00373312,0.0027618,0.0249777,0.0283415,-0.0007001,0.00755231,-0.01198001,-0.0111856,0.0124442,-0.0004008,-0.00113155,-0.000910169,-0.0058101,-0.000245201,0.00113802,-0.00256878,0.00130049,-0.00113333,-0.00009061
Western_Iberia_C,0.102371,0.14599836,0.03839654,-0.001609,0.03899084,-0.00194992,-0.00259015,0.00669191,0.02371925,0.0289806,-0.00097474,0.0046501,-0.009812,-0.00449542,0.01059016,-0.008751,-0.0151195,0.0007601,-0.00553231,-0.00175110,0.0043702,-0.00123745,0.0030881,-0.00549543,0.00319898
Western_Iberia_D,0.102441,0.145094,0.036345,-0.001454,0.039276,-0.000802,-0.002850,0.000692,0.026026,0.031231,-0.002395,0.008542,-0.011354,-0.011526,0.010943,-0.004293,-0.007383,-0.000350,-0.006128,-0.004971,0.002308,-0.003849,0.000786,-0.003223,0.00000102
Western_Iberia_E,0.09898026,0.14598236,0.03170178,0.001938,0.03908402,-0.00140014,-0.0042311,-0.00323121,0.024499543,0.03479807,-0.001624,0.008692,-0.01169744,-0.01623922,0.00778872,-0.000265,-0.001825,-0.0019001,-0.007416,-0.001982751,0.005004991,-0.00531731,-0.0016925,-0.00011992,0.00199936
Eastern_Iberia_B,0.116763,0.145573,0.040169,-0.000895,0.043895,-0.001604,-0.001487,0.000867,0.022104,0.030804,-0.002591,0.006740,-0.014299,-0.011302,0.007289,0.000120,-0.000935,0.000312,-0.000230,-0.000542,0.004739,-0.000805,-0.001543,-0.002186,0.000788
Eastern_Iberia_A,0.120007,0.145737,0.082263,-0.001316,0.089309,-0.002924,-0.001069,0.003079,0.020969,0.033103,-0.003142,0.008077,-0.014740,-0.011730,0.009619,-0.002122,-0.004994,-0.001202,-0.000417,-0.000296,0.004234,-0.000314,-0.002809,-0.005270,0.000381
Eastern_Iberia_C,0.116199,0.1470133,0.042622,-0.0028219,0.0400251,-0.0022293,-0.00053853,0.002461301,0.0193323,0.02958292,-0.0046045,0.0081411,-0.0148759,-0.01261152,0.0044135,0.0023003,0.0020513,0.00104947,0.00114143,-0.0044522,0.0004899,0.0006302,0.00123331,0.000321688,-0.00412023
Eastern_Iberia_D,0.118623,0.146511,0.040830,-0.000864,0.044471,-0.001771,-0.001364,0.001725,0.022721,0.032378,-0.002682,0.006962,-0.014377,-0.011684,0.007179,-0.000780,-0.001410,0.000075,-0.001211,-0.000411,0.003582,-0.000496,-0.002138,-0.003820,0.001196

Target: gixajo_scaled
Distance: 1.6402% / 0.01640228 | ADC: 0.25x
48.4 Iberian:Eastern_Iberia_D
24.2 Iberian:Western_Iberia_B
20.2 Iberian:Basque_A
6.0 Iberian:Basque_B
1.2 Iberian:Western_Iberia_A

Target: gixajo_scaled
Distance: 1.6335% / 0.01633540
36.0 Iberian:Eastern_Iberia_D
32.0 Iberian:Western_Iberia_B
15.6 Iberian:Basque_B
14.4 Iberian:Basque_A
2.0 Iberian:Western_Iberia_A

[Defcon2]

No soy del oeste, esto se equivoca.

Target: Juan_scaled
Distance: 2.6026% / 0.02602564
47.2 Western_Iberia_D
36.0 Western_Iberia_E
10.8 Western_Iberia_A
6.0 Western_Iberia_C

Distance to: Juan_scaled
0.02693757 Western_Iberia_D
0.02814198 Western_Iberia_E
0.03210017 Western_Iberia_C
0.03305533 Western_Iberia_B
0.03574008 Eastern_Iberia_B
0.03635971 Eastern_Iberia_D
0.03802339 Eastern_Iberia_C
0.04912878 Western_Iberia_A
0.05499325 Basque_A
0.05662888 Basque_B
0.07494868 Eastern_Iberia_A

Otras medias:

Cataluña,0.12077928,0.14707664,0.04290777,0.00236625,0.04438687,0.0001284,-0.00038494,0.00249616,0.02112285,0.03031871,-0.00189737,0.00757058,-0.01494542,-0.01224015,0.00818586,0.00116473,-0.00122812,0.00020602,-0.00021286,-0.00129585,0.00355161,-0.00018646,-0.0022193,-0.00277015,0.00019819
Iberia_Occidental,0.1077212,0.14586343,0.03865823,-0.00203468,0.04417193,-0.0030299,-0.00402187,0.0030634,0.02568488,0.03045303,-0.00198198,0.00690193,-0.01338008,-0.01136302,0.01135753,-0.00327203,-0.0060965,-0.00131768,-0.00523415,-0.00102267,0.00236928,-0.00307972,-0.00054072,-0.00236073,0.00137203
Vasco,0.12536365,0.14761855,0.052205,0.00597998,0.05149248,0.00064698,-0.0023076,0.00015073,0.02617888,0.0403983,-0.0064707,0.01095693,-0.01912345,-0.01767323,0.01585293,0.00464983,-0.0033321,0.00095703,-0.0015381,-0.00247163,0.00521818,0.00029703,-0.0060305,-0.00541233,0.00214718
Iberia_Oriental,0.11683327,0.1465569,0.04020671,-0.00102679,0.0434405,-0.00227718,-0.00124485,0.00159748,0.02242915,0.03200014,-0.00343555,0.00777106,-0.01503472,-0.0117703,0.00794727,0.00062631,-0.00176263,0.00017622,-0.00143362,-0.0019189,0.00364306,0.00024555,-0.00207599,-0.00231641,-0.00038346

[gixajo]

De qué se compone East_Iberia_A? está lejos en todas las medias.

Es una de las más simples, igual es la que menos samples mezclados tiene : Spanish_Terres_de_l'Ebre +Spanish_Valencia del modern averages, igual me equivoqué en algo en alguno de los pasos que lo hago a mano. Intento centrarme, pero es difícil en esta casa, me puedo haber despistado y con no seleccionar un signo negativo al copiar y pegar, te puede cambiar bastante todo.

[gixajo]

No soy del oeste, esto se equivoca.

Target: Juan_scaled
Distance: 2.6026% / 0.02602564
47.2 Western_Iberia_D
36.0 Western_Iberia_E
10.8 Western_Iberia_A
6.0 Western_Iberia_C

Distance to: Juan_scaled
0.02693757 Western_Iberia_D
0.02814198 Western_Iberia_E
0.03210017 Western_Iberia_C
0.03305533 Western_Iberia_B
0.03574008 Eastern_Iberia_B
0.03635971 Eastern_Iberia_D
0.03802339 Eastern_Iberia_C
0.04912878 Western_Iberia_A
0.05499325 Basque_A
0.05662888 Basque_B
0.07494868 Eastern_Iberia_A

Otras medias:

Cataluña,0.12077928,0.14707664,0.04290777,0.00236625,0.04438687,0.0001284,-0.00038494,0.00249616,0.02112285,0.03031871,-0.00189737,0.00757058,-0.01494542,-0.01224015,0.00818586,0.00116473,-0.00122812,0.00020602,-0.00021286,-0.00129585,0.00355161,-0.00018646,-0.0022193,-0.00277015,0.00019819
Iberia_Occidental,0.1077212,0.14586343,0.03865823,-0.00203468,0.04417193,-0.0030299,-0.00402187,0.0030634,0.02568488,0.03045303,-0.00198198,0.00690193,-0.01338008,-0.01136302,0.01135753,-0.00327203,-0.0060965,-0.00131768,-0.00523415,-0.00102267,0.00236928,-0.00307972,-0.00054072,-0.00236073,0.00137203
Vasco,0.12536365,0.14761855,0.052205,0.00597998,0.05149248,0.00064698,-0.0023076,0.00015073,0.02617888,0.0403983,-0.0064707,0.01095693,-0.01912345,-0.01767323,0.01585293,0.00464983,-0.0033321,0.00095703,-0.0015381,-0.00247163,0.00521818,0.00029703,-0.0060305,-0.00541233,0.00214718
Iberia_Oriental,0.11683327,0.1465569,0.04020671,-0.00102679,0.0434405,-0.00227718,-0.00124485,0.00159748,0.02242915,0.03200014,-0.00343555,0.00777106,-0.01503472,-0.0117703,0.00794727,0.00062631,-0.00176263,0.00017622,-0.00143362,-0.0019189,0.00364306,0.00024555,-0.00207599,-0.00231641,-0.00038346

Muy mal?

[gixajo]

El Eastern Iberia A tiene al menos una coordenada mal, en vez de (C1+C2)/2 es C1+C2 , igual solo es esa.