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Thread: R1a-Z93 & Kurds

  1. #41
    Veteran Member Zoro's Avatar
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    74.31% W. Eurasian + 11.42% E. Eurasian + 5.42% S. Eurasian + 8.85% Basal Eurasian/African
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    Forgot to mention that this is what I was told why can't rely on Admixture, PCA or G-25 for actual direct ancestry from a specific population is because they cluster based total drift since the beginning of time. For example, if we look at 3 subjects on PCA or G-25

    an Italian
    a British
    a half British half Ethiopian mulato

    The British and Italian will cluster near each other or on G-25 have closer coordinates to each other than the Mulato to the British, even though the Mulato has 1 actual British parent because the British and Italian share a ton of very very old ancestry whereas the Mulato has 50% African ancestry which would place him further away from the European cluster even though 1 of his parents is actually British and the Italian doesn't have a British parent.

    That's why PCA or G-25 is not accurate when it comes to more recent direct ancestry especially if we try to find steppe ancestry in Middle-Eastern populations that have alot of Basal Eurasian ancestry. The Basal Eurasian ancestry plots them further away from Andronovo than a European on PCA or G-25 since Europeans and Andronovo share more much older ancestry with each other (more WHG and EHG) than a Middle-Eastern and Andronovo (less WHG less EHG more Basal more SW Asian )

    That's we have to do IBD using a reliable method or use some formal stats to figure out more recent direct ancestry. That's also why PCA and G-25 will change alot depending on what samples are in the run. Doesn't mean that IBD is 100% foolproof since it has little error margin but it's generally much more suitable for figuring out direct ancestry

  2. #42
    Veteran Member Zoro's Avatar
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    Quote Originally Posted by Zoro View Post
    I was able to dig up some IBD runs Dilawer from Eurasian DNA had done for me a while back. He explained that these were done using BEAGLE FASTIBD and were the most accurate ones out there because he had only used the most accurate high coverage ancients AND he was able to use 680K SNPs.

    BEAGLE filters out all IBD segments that are common shared among different populations due to some very deep ancestry. Dilawer threw out any segments under 100 SNPs and only kept segments that are rare enough to have a threshold IBD score below 1E-10 and have come directly from the ancestral population. According to BEAGLE:



    I found this run he had done for me using a high quality ANDRONOVO-MLBA sample. Goes to show why you can't rely on ADMIXTURE or PCA or G-25 to figure out direct ancestry. Notice how high Kurds are in the table compared to other West Asians.

    POPULATION TOTAL IBD (avg)
    Lithuanians 5,230.33
    Karelians 4,899.33
    Cossacks 4,688.50
    Latvians 4,512.00
    Tajik_Pamiri 4,507.00
    Maris 4,168.50
    Chuvashes 4,123.00
    Saami 4,031.00
    Belarusians 4,014.75
    Ukrainians 3,967.14
    Russians 3,959.00
    Russians-Central 3,944.50
    Kryashen-Tatars 3,772.33
    KURDS-IRAQ-KURMANJI 3,767.00
    Estonians 3,711.83
    Tatars 3,449.67
    Germans 3,377.67
    Bashkirs 3,335.80
    Tabasarans 3,325.67
    Croats 3,161.50
    Avars 3,147.67
    Mansis 3,120.33
    Moldavians 2,649.00
    Turkmens 2,526.33
    Circassians 2,417.00
    Kumyks 2,347.67
    Russians-North 2,150.50
    North-Ossetians 2,096.50
    Iranians 2,059.25
    Lezgins 1,954.00
    Albanians 1,939.67
    Kazakhs 1,851.00
    Kyrgyz_Tdj 1,775.00
    Uzbek 1,745.67
    Abkhazians 1,657.67
    Cossacks_Kuban 1,624.50
    Azerbaijanis 1,437.33
    Iran_Zoroastrian 1,421.85
    Tuvinians 1,402.50
    Balkars 1,341.67
    Orissa 1,313.00
    Altaians 1,254.17
    Ho 1,250.00
    Jordanians 1,250.00
    Assyrians 1,202.67
    Tajiks 1,114.00
    Armenians 1,090.00
    Kyrgyz 995.00
    Punjabis 992.00
    Druze 878.67
    Gupta 834.00
    Sakha 772.00
    Saudi-Arabians 754.00
    Buryats 713.79
    Marwadi 713.00
    Uygurs 712.00
    Chukchis 692.33
    Arabs-Israel 666.00
    Mongolians 633.00
    Georgians 612.50
    Santhal 564.00
    Koryaks 540.33
    Evenks 504.20
    Yakuts 159.00


    I also asked what about IBD on Gedmatch. The reply I got was that in order for IBD to be more accurate we have to first phase the samples DNA and then we have to be able to distinguish whether a segment you share with someone is a common segment that a quarter of the world has or is a more rare segment that only a few have. He doesn't believe that Gedmatch phases or distinguishes rare from common segments.

  3. #43
    Veteran Member Zoro's Avatar
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    A little off topic. I also found these where I had paid Eurasian DNA to do IBD analysis for me to see how much IBD I shared with different populations using 680K SNPs.

    POPULATION AVG IBD PER SAMPLE
    Assyrians 2,538.33
    Moldavians 1,989.00
    Saudi-Arabians 1,988.00
    North-Ossetians 1,586.00
    Abkhazians 1,566.67
    Georgians 1,446.00
    Uygurs 1,385.00
    Azerbaijanis 1,337.67
    Tatars 1,301.33
    Balkars 1,297.33
    Armenians 1,296.67
    Avars 1,252.33
    Lezgins 1,164.00
    Iran_Zoroastrian 1,081.30
    Belarusians 1,065.75
    Tajiks 1,006.00
    Iranians 991.50
    Ukrainians 985.57
    Kumyks 969.67
    Cossacks 960.50
    Chuvashes 949.67
    Karelians 935.33
    Druze 926.00
    Tajik-Tajikistan 878.50
    Latvians 842.00
    Albanians 835.00
    Turkmens 825.33
    Kshatriya 820.00
    Jordanians 804.00
    Maris 781.75
    Croats 688.50
    Saami 676.00
    Tabasarans 669.67
    Russians 662.00
    Circassians 654.67
    Kyrgyz_Tdj 587.33
    Lithuanians 582.67
    Estonians 475.50
    Indian_South 411.00
    Kyrgyz 390.00
    Uzbek 375.67
    Buryats 362.18
    Kazakhs 269.00
    Mansis 266.00
    Bashkirs 245.60
    Altaians 226.17
    Indian_East 207.67
    Punjab 158.00
    Burmese 124.13
    Yakuts 119.00
    Evenks 98.85
    Sakha 95.57
    Sub_Saharan 88.67
    Koryaks 66.19
    Batak 59.67
    Chukchis 56.20
    Kosipe 55.00

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