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Thread: Canary Islands genetic study by Guillen-Guio et al. 2018

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    Default Canary Islands genetic study by Guillen-Guio et al. 2018

    Most recent and deepest study about Canarians using the largest and most diverse Canary Islands sample analyzed to date at a genomic scale : 416 individuals (34 from El Hierro, 35 from La Palma, 78 from La Gomera, 64 from Tenerife, 117 from Gran Canaria, 32 from Fuerteventura, and 56 from Lanzarote)

    Genomic Analyses of Human European Diversity at the Southwestern Edge: Isolation, African Influence and Disease Associations in the Canary Islands, Guillen-Guio et al. 2018

    Abstract
    Despite the genetic resemblance of Canary Islanders to other southern European populations, their geographical isolation and the historical admixture of aborigines (from North Africa) with sub-Saharan Africans and Europeans have shaped a distinctive genetic makeup that likely affects disease susceptibility and health disparities. Based on single nucleotide polymorphism array data and whole genome sequencing (30×), we inferred that the last African admixture took place ∼14 generations ago and estimated that up to 34% of the Canary Islander genome is of recent African descent. The length of regions in homozygosis and the ancestry-related mosaic organization of the Canary Islander genome support the view that isolation has been strongest on the two smallest islands. Furthermore, several genomic regions showed significant and large deviations in African or European ancestry and were significantly enriched in genes involved in prevalent diseases in this community, such as diabetes, asthma, and allergy. The most prominent of these regions were located near LCT and the HLA, two well-known targets of selection, at which 40‒50% of the Canarian genome is of recent African descent according to our estimates. Putative selective signals were also identified in these regions near the SLC6A11-SLC6A1, KCNMB2, and PCDH20-PCDH9 genes. Taken together, our findings provide solid evidence of a significant recent African admixture, population isolation, and adaptation in this part of Europe, with the favoring of African alleles in some chromosome regions. These findings may have medical implications for populations of recent African ancestry"


    "For K=4, the overall ancestry proportions among Canary Islanders were, on an average, 22% NAF and 3% SSA (table1)... By using the largest and most diverse Canary Islands sample analyzed to date at a genomic scale, we recognized a wider range of interindividual African ancestry assignments (as much as 29.9% NAF and 9.2% SSA), the largest so far identified in southwestern EUR populations (Botigue et al. 2013)..….. the proportion of SSA ancestry we observed in Canary Islanders likely originated in the postconquest importation of enslaved African people."



    Global 25 coordinates : https://drive.google.com/open?id=17u...RqDPkOOFx3LCwt

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    the closest samples to me are from la Gomera and not el hierro strangely

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    Quote Originally Posted by Nassbean View Post
    the closest samples to me are from la Gomera and not el hierro strangely
    What are your scaled distances to these samples ?

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    Quote Originally Posted by MrKemel View Post
    What are your scaled distances to these samples ?
    Distance to: Nassbean_scaled
    0.09462414 Spanish_La_Gomera:Can326
    0.09645368 Spanish_La_Gomera:Can338
    0.09659556 Spanish_La_Gomera:Can53
    0.09780544 Spanish_Lanzarote:Can390
    0.09900624 Spanish_La_Gomera:Can166
    0.10094695 Spanish_La_Gomera:Can262
    0.10121267 Spanish_Gran_Canaria:Can159
    0.10265137 Spanish_Lanzarote:Can191
    0.10456987 Spanish_El_Hierro:Can251
    0.10557759 Spanish_La_Gomera:Can29
    0.10575504 Spanish_Lanzarote:Can48
    0.10593524 Spanish_Fuerteventura:Can402
    0.10607734 Spanish_Fuerteventura:Can75
    0.10664747 Spanish_La_Gomera:Can107
    0.10706180 Spanish_La_Gomera:Can169
    0.10713747 Spanish_El_Hierro:Can52
    0.10713782 Spanish_Lanzarote:Can22
    0.10743388 Spanish_La_Gomera:Can31
    0.10788305 Spanish_La_Gomera:Can78
    0.10823122 Spanish_Fuerteventura:Can112
    0.10888777 Spanish_La_Gomera:Can303
    0.10890440 Spanish_Lanzarote:Can407
    0.10904544 Spanish_La_Gomera:Can323
    0.10955490 Spanish_La_Gomera:Can187
    0.10963529 Spanish_La_Gomera:Can306
    0.10967824 Spanish_La_Gomera:Can346
    0.11032281 Spanish_Fuerteventura:Can148
    0.11068228 Spanish_La_Gomera:Can138
    0.11114975 Spanish_El_Hierro:Can369
    0.11125276 Spanish_El_Hierro:Can391
    0.11132898 Spanish_Lanzarote:Can359
    0.11170160 Spanish_Lanzarote:Can325
    0.11172248 Spanish_La_Gomera:Can100
    0.11200890 Spanish_Lanzarote:Can108
    0.11234398 Spanish_La_Gomera:Can97
    0.11259607 Spanish_La_Gomera:Can321
    0.11262790 Spanish_Gran_Canaria:Can124
    0.11282318 Spanish_La_Gomera:Can30
    0.11297466 Spanish_Lanzarote:Can24
    0.11299221 Spanish_Gran_Canaria:Can240
    0.11308161 Spanish_El_Hierro:Can146
    0.11340740 Spanish_Lanzarote:Can152
    0.11468747 Spanish_Gran_Canaria:Can35
    0.11484315 Spanish_La_Gomera:Can102
    0.11510754 Spanish_Fuerteventura:Can385
    0.11553165 Spanish_La_Gomera:Can300
    0.11554871 Spanish_Lanzarote:Can50
    0.11620832 Spanish_La_Gomera:Can332
    0.11632869 Spanish_Fuerteventura:Can342
    0.11635134 Spanish_Fuerteventura:Can299

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    Spanish_La_Gomera:Can326 ---> the closest to me and has more SSA than me surprisingly (probably due to slave trade)

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    Yes many Canarians (about 10% of these 416 samples) have relatively high SSA ancestry between 5 and 10%, indeed probably due to postconquest importation of enslaved African people.

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    Quote Originally Posted by Nassbean View Post
    Distance to: Nassbean_scaled
    0.09462414 Spanish_La_Gomera:Can326
    0.09645368 Spanish_La_Gomera:Can338
    0.09659556 Spanish_La_Gomera:Can53
    0.09780544 Spanish_Lanzarote:Can390
    0.09900624 Spanish_La_Gomera:Can166
    0.10094695 Spanish_La_Gomera:Can262
    0.10121267 Spanish_Gran_Canaria:Can159
    0.10265137 Spanish_Lanzarote:Can191
    0.10456987 Spanish_El_Hierro:Can251
    0.10557759 Spanish_La_Gomera:Can29
    0.10575504 Spanish_Lanzarote:Can48
    0.10593524 Spanish_Fuerteventura:Can402
    0.10607734 Spanish_Fuerteventura:Can75
    0.10664747 Spanish_La_Gomera:Can107
    0.10706180 Spanish_La_Gomera:Can169
    0.10713747 Spanish_El_Hierro:Can52
    0.10713782 Spanish_Lanzarote:Can22
    0.10743388 Spanish_La_Gomera:Can31
    0.10788305 Spanish_La_Gomera:Can78
    0.10823122 Spanish_Fuerteventura:Can112
    0.10888777 Spanish_La_Gomera:Can303
    0.10890440 Spanish_Lanzarote:Can407
    0.10904544 Spanish_La_Gomera:Can323
    0.10955490 Spanish_La_Gomera:Can187
    0.10963529 Spanish_La_Gomera:Can306
    0.10967824 Spanish_La_Gomera:Can346
    0.11032281 Spanish_Fuerteventura:Can148
    0.11068228 Spanish_La_Gomera:Can138
    0.11114975 Spanish_El_Hierro:Can369
    0.11125276 Spanish_El_Hierro:Can391
    0.11132898 Spanish_Lanzarote:Can359
    0.11170160 Spanish_Lanzarote:Can325
    0.11172248 Spanish_La_Gomera:Can100
    0.11200890 Spanish_Lanzarote:Can108
    0.11234398 Spanish_La_Gomera:Can97
    0.11259607 Spanish_La_Gomera:Can321
    0.11262790 Spanish_Gran_Canaria:Can124
    0.11282318 Spanish_La_Gomera:Can30
    0.11297466 Spanish_Lanzarote:Can24
    0.11299221 Spanish_Gran_Canaria:Can240
    0.11308161 Spanish_El_Hierro:Can146
    0.11340740 Spanish_Lanzarote:Can152
    0.11468747 Spanish_Gran_Canaria:Can35
    0.11484315 Spanish_La_Gomera:Can102
    0.11510754 Spanish_Fuerteventura:Can385
    0.11553165 Spanish_La_Gomera:Can300
    0.11554871 Spanish_Lanzarote:Can50
    0.11620832 Spanish_La_Gomera:Can332
    0.11632869 Spanish_Fuerteventura:Can342
    0.11635134 Spanish_Fuerteventura:Can299

    Just in case if you want to try it I created a new calculator :

    https://www.theapricity.com/forum/sh...tor-G25-scaled

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