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IBS Kurdish distances
Since I didn't have much faith in Gedmatch calculator distances because all of them wrongly showed Europeans closer to Mbuti and SSA than to E. Asian and American Indians, I decided to use Plink IBS program to see what the correct distances are from Kurmanji Kurds. Dilawer from Eurasian DNA showed me how to exclude high frequency alleles common to all humans to solve some of the problems Gedmatch calculators had and to mitigate some of the African human reference bias in genotyping.
After following his instructions I'm happy to show that the problem of Europeans/W Asians being closer to SSA than E. Asians is solved as you can see in this table.
This table is sorted from closest to furthest for Kurd-Kurmanji. Unlike the calculators on Vahuado as you can see it correctly shows E. Asians above SSA
FID1 FID2 Z0 Z1 Z2 PI_HAT DST PPC RATIO Kurd-Kurmanji-IQ Kurd-Kurmanji-IQ 0.0009 0.9371 0.062 0.5305 0.908546 1 3164 Kurd-Kurmanji-IQ Kurd-Kurmanji-IQ 0.0033 0.9558 0.041 0.5189 0.906323 1 618.2 Kurd-Kurmanji-IQ Kurd_Turkey 0.9053 0 0.0947 0.0947 0.839083 0.4574 1.9914 Kurd-Kurmanji-IQ Georgian.DG 0.9112 0 0.0888 0.0888 0.83822 0.1694 1.9256 Kurd-Kurmanji-IQ Lezgin.DG 0.9052 0 0.0948 0.0948 0.837952 0.1496 1.9193 Kurd-Kurmanji-IQ Kurd_Feyli 0.9248 0 0.0752 0.0752 0.837651 0.4895 1.9979 Kurd-Kurmanji-IQ Turkish 0.9075 0 0.0925 0.0925 0.837587 0.0562 1.8781 Kurd-Kurmanji-IQ Turkish.DG 1 0 0 0 0.837396 0.0016 1.7821 Kurd-Kurmanji-IQ Adygei.DG 0.923 0 0.077 0.077 0.837375 0.1027 1.9011 Kurd-Kurmanji-IQ Armenian.DG 0.9115 0 0.0885 0.0885 0.837075 0.4007 1.9801 Kurd-Kurmanji-IQ Russia_NorthOssetian.DG 0.9419 0 0.0581 0.0581 0.836955 0.4732 1.9946 Kurd-Kurmanji-IQ Lezgin.DG 1 0 0 0 0.836915 0.0594 1.8802 Kurd-Kurmanji-IQ Kurd_Feyli 0.9183 0 0.0817 0.0817 0.836852 0.141 1.9167 Kurd-Kurmanji-IQ Kurd_Feyli 1 0 0 0 0.836826 0.0097 1.8234 Kurd-Kurmanji-IQ Kurd_Sorani 0.9258 0 0.0742 0.0742 0.836822 0.2344 1.9428 Kurd-Kurmanji-IQ Turkish.DG 0.9378 0 0.0622 0.0622 0.836668 0.1394 1.9155 Kurd-Kurmanji-IQ Armenian.DG 0.9159 0 0.0841 0.0841 0.836655 0.1112 1.9049 Kurd-Kurmanji-IQ Russia_NorthOssetian.DG 1 0 0 0 0.836483 0.011 1.8277 Kurd-Kurmanji-IQ Pashtun_Pak 0.9421 0 0.0579 0.0579 0.836426 0.0032 1.7949 Kurd-Kurmanji-IQ Iranian.DG 0.9202 0.0488 0.031 0.0554 0.836215 0.8481 2.0847 Kurd-Kurmanji-IQ Kurd_Feyli 1 0 0 0 0.836038 0.0466 1.8716 Kurd-Kurmanji-IQ Adygei.DG 0.9483 0 0.0517 0.0517 0.835939 0.7401 2.0527 Kurd-Kurmanji-IQ Kalash.DG 1 0 0 0 0.835851 0 1.5112 Kurd-Kurmanji-IQ Iranian 0.9433 0.0135 0.0432 0.05 0.835661 0.4464 1.9891 Kurd-Kurmanji-IQ Sindhi.DG 0.9333 0 0.0667 0.0667 0.835617 0.0098 1.823 Kurd-Kurmanji-IQ Iranian.DG 1 0 0 0 0.835591 0.0103 1.826 Kurd-Kurmanji-IQ Punjabi.DG 0.9475 0.0068 0.0457 0.0491 0.83558 0.0034 1.7959 Kurd-Kurmanji-IQ Georgian.DG 0.9231 0 0.0769 0.0769 0.835562 0.2113 1.937 Kurd-Kurmanji-IQ Pashtun_Afg 0.938 0.0261 0.0359 0.0489 0.835341 0.2094 1.936 Kurd-Kurmanji-IQ Tajik.DG 0.9288 0 0.0712 0.0712 0.83524 0.0069 1.8135 Kurd-Kurmanji-IQ Pashtun_Pak 0.9371 0 0.0629 0.0629 0.835227 0.0336 1.8582 Kurd-Kurmanji-IQ Brahui.DG 1 0 0 0 0.834956 0.0106 1.8257 Kurd-Kurmanji-IQ Iranian 0.9317 0 0.0683 0.0683 0.834891 0.6697 2.0354 Kurd-Kurmanji-IQ Punjabi_Pak 0.9549 0.001 0.0441 0.0446 0.834863 0.0651 1.8821 Kurd-Kurmanji-IQ Punjabi_Pak 0.9336 0 0.0664 0.0664 0.834677 0.0166 1.8371 Kurd-Kurmanji-IQ Pashtun_Afg 1 0 0 0 0.834573 0.1329 1.9131 Kurd-Kurmanji-IQ Hungarian.DG 1 0 0 0 0.834528 0.0075 1.8175 Kurd-Kurmanji-IQ Estonian.DG 0.932 0 0.068 0.068 0.834343 0.0005 1.7567 Kurd-Kurmanji-IQ Balochi.DG 1 0 0 0 0.834313 0 1.6623 Kurd-Kurmanji-IQ Sardinian.DG 1 0 0 0 0.834261 0.0057 1.8106 Kurd-Kurmanji-IQ Uyghur.DG 0.9499 0 0.0501 0.0501 0.834196 0.0004 1.7485 Kurd-Kurmanji-IQ Makrani.DG 1 0 0 0 0.834173 0.0293 1.8551 Kurd-Kurmanji-IQ Punjabi_Arain 1 0 0 0 0.834095 0.0414 1.8672 Kurd-Kurmanji-IQ Spanish.DG 1 0 0 0 0.834088 0.0001 1.7264 Kurd-Kurmanji-IQ Punjabi_Pak 1 0 0 0 0.833984 0.0007 1.7635 Kurd-Kurmanji-IQ Punjabi.DG 1 0 0 0 0.833906 0 1.6225 Kurd-Kurmanji-IQ Finnish.DG 1 0 0 0 0.833875 0.0442 1.8698 Kurd-Kurmanji-IQ Hungarian.DG 1 0 0 0 0.833754 0.0086 1.8198 Kurd-Kurmanji-IQ Balochi.DG 1 0 0 0 0.833734 0 1.387 Kurd-Kurmanji-IQ Kalash.DG 1 0 0 0 0.833711 0 1.406 Kurd-Kurmanji-IQ Uyghur.DG 0.9533 0 0.0467 0.0467 0.833706 0 1.7 Kurd-Kurmanji-IQ Basque.DG 1 0 0 0 0.833676 0.0003 1.7446 Kurd-Kurmanji-IQ Tajik_Tajiskistan 0.9586 0 0.0414 0.0414 0.833595 0.0004 1.7487 Kurd-Kurmanji-IQ Basque.DG 1 0 0 0 0.833387 0.0147 1.8349 Kurd-Kurmanji-IQ Tajik.DG 1 0 0 0 0.833271 0 1.4184 Kurd-Kurmanji-IQ Sindhi.DG 1 0 0 0 0.833232 0 1.5148 Kurd-Kurmanji-IQ English.DG 1 0 0 0 0.833144 0.0002 1.7361 Kurd-Kurmanji-IQ Spanish.DG 1 0 0 0 0.833101 0.0281 1.8545 Kurd-Kurmanji-IQ BedouinB.DG 1 0 0 0 0.833087 0 1.6776 Kurd-Kurmanji-IQ Makrani.DG 1 0 0 0 0.833086 0 1.3562 Kurd-Kurmanji-IQ Finnish.DG 1 0 0 0 0.832947 0 1.7111 Kurd-Kurmanji-IQ English.DG 1 0 0 0 0.832783 0.0008 1.7662 Kurd-Kurmanji-IQ Punjabi.DG 1 0 0 0 0.832739 0 1.6468 Kurd-Kurmanji-IQ Punjabi.DG 1 0 0 0 0.832684 0 1.5883 Kurd-Kurmanji-IQ Finnish.DG 1 0 0 0 0.832636 0.0114 1.8274 Kurd-Kurmanji-IQ Kapu.DG 1 0 0 0 0.832628 0 1.5127 Kurd-Kurmanji-IQ Estonian.DG 1 0 0 0 0.832517 0.0006 1.763 Kurd-Kurmanji-IQ Brahui.DG 1 0 0 0 0.83232 0 1.3845 Kurd-Kurmanji-IQ Germany_EN_LBK_Stuttgart_published.DG 1 0 0 0 0.832246 0 1.6061 Kurd-Kurmanji-IQ BedouinB.DG 1 0 0 0 0.832229 0 1.4321 Kurd-Kurmanji-IQ Kapu.DG 1 0 0 0 0.832138 0 1.4978 Kurd-Kurmanji-IQ Sardinian.DG 1 0 0 0 0.831968 0 1.6857 Kurd-Kurmanji-IQ Sardinian.DG 1 0 0 0 0.831883 0 1.6708 Kurd-Kurmanji-IQ Mongola.DG 1 0 0 0 0.831457 0 1.1508 Kurd-Kurmanji-IQ Mongola.DG 1 0 0 0 0.831174 0 1.0523 Kurd-Kurmanji-IQ Dai.DG 1 0 0 0 0.830733 0 1.0119 Kurd-Kurmanji-IQ Yakut.DG 1 0 0 0 0.830432 0 1.0622 Kurd-Kurmanji-IQ Japanese.DG 1 0 0 0 0.829717 0 1.0135 Kurd-Kurmanji-IQ Han.DG 1 0 0 0 0.829569 0 1.0392 Kurd-Kurmanji-IQ Japanese.DG 1 0 0 0 0.829452 0 0.9764 Kurd-Kurmanji-IQ Yakut.DG 1 0 0 0 0.829439 0 1.0688 Kurd-Kurmanji-IQ Dai.DG 1 0 0 0 0.829362 0 1.0393 Kurd-Kurmanji-IQ Dai.DG 1 0 0 0 0.829125 0 0.9971 Kurd-Kurmanji-IQ Han.DG 1 0 0 0 0.829017 0 0.9889 Kurd-Kurmanji-IQ China_Lahu.DG 1 0 0 0 0.82889 0 1.0147 Kurd-Kurmanji-IQ Han.DG 1 0 0 0 0.828724 0 1.0098 Kurd-Kurmanji-IQ Japanese.DG 1 0 0 0 0.828581 0 0.9323 Kurd-Kurmanji-IQ Karitiana.DG 1 0 0 0 0.828227 0 0.5945 Kurd-Kurmanji-IQ China_Lahu.DG 1 0 0 0 0.82791 0 0.9205 Kurd-Kurmanji-IQ Dai.DG 1 0 0 0 0.827809 0 0.9776 Kurd-Kurmanji-IQ Karitiana.DG 1 0 0 0 0.827348 0 0.5852 Kurd-Kurmanji-IQ Dai.DG 1 0 0 0 0.827081 0 0.9875 Kurd-Kurmanji-IQ Karitiana.DG 1 0 0 0 0.826634 0 0.5951 Kurd-Kurmanji-IQ Luxembourg_Loschbour.DG 1 0 0 0 0.822313 0 0.7686 Kurd-Kurmanji-IQ Karitiana.SG 1 0 0 0 0.81803 0 0 Kurd-Kurmanji-IQ Somali.DG 1 0 0 0 0.802431 0 1.0503 Kurd-Kurmanji-IQ Masai.DG 1 0 0 0 0.795138 0 1.0764 Kurd-Kurmanji-IQ Masai.DG 1 0 0 0 0.794875 0 1.0687 Kurd-Kurmanji-IQ Luhya.DG 1 0 0 0 0.781284 0 0.7921 Kurd-Kurmanji-IQ Luhya.DG 1 0 0 0 0.780743 0 0.7893 Kurd-Kurmanji-IQ Yoruba.DG 1 0 0 0 0.779464 0 0.7386 Kurd-Kurmanji-IQ Yoruba.DG 1 0 0 0 0.779199 0 0.7426 Kurd-Kurmanji-IQ Yoruba.DG 1 0 0 0 0.778603 0 0.7551 Kurd-Kurmanji-IQ Mbuti.DG 1 0 0 0 0.778184 0 0.5869 Kurd-Kurmanji-IQ Mbuti.DG 1 0 0 0 0.777718 0 0.5827 Kurd-Kurmanji-IQ Mbuti.DG 1 0 0 0 0.777646 0 0.5587 Kurd-Kurmanji-IQ Mbuti.DG 1 0 0 0 0.777422 0 0.5618
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Originally Posted by FinalFlash
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