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181319 SNPs used in this evaluationOriginally Posted by Kaspias
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| Received: 11,836 Given: 7,303 |
Thanks for the feedback!
So basically not too different than old FTDNA/MH/V3 23andme/Ancestry data.
This is my super kit(FTDNA/MH/23andme merged)
192658 SNPs used in this evaluation
qpAdm: Bulgarian_1.DG= 77 - Kimak.SG= 23, p= 0.36, se= 0.31.
Y: Q-L330 > Q-YP771 > Q-BZ180 > Q-F16045* (F15008*) --> Baikal N, Altai MLBA, Aldy-Bel, Pazyryk, Hun.
MT: K1a --> Iron Gates, Starcevo, Bulgaria N, Bulgaria CA, Bulgaria BA.
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It is very similar to 23&me V3 chip.
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The point of doing WGS is not for using in calculators that were made based on the limited number of SNPs in 23andme or FTDNA because those calculators on gedmatch or G25 will only look at those limited SNPs and ignore all theextra SNPs from WGS.
The point of WGS besides medical is to use in custom calculators made sourced on WGS references which are pretty limited or maybe 1240k references or use in formal tools along with WGS or 1240k references. Basically you would need to make the calculators yourself.
From the WGS or 1240k calculators i’ve put together I’ve seen differences between those and gedmatch using WGS vs 23andme data for same person
Muzh ba staso la tyaro tsakha ra wubaasu
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Is full genome raw data compatible with GEDmatch?
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You have to convert it to V3 and I get very good results.
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Also with G25 I get way better distances with my WGS data when comparing it to raw data of 23andMe and MyHeritage. Is that also for you the case?
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Wait you can get g25 with WGS? Shit I didn’t even know that. Now I’m even happier about my purchase.
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When you get your raw DNA (BAM file) you can extract autosomal files with WGSExtract, so you extract 23andMev3 or any other kind of autosomal files.
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That would be defeating the whole purpose of doing WGS though if you only extract 23andMe V3 SNPs and throw the rest away. You can easily convert your WGS VCF file to 23andMe text formatted. Keep all your WGS SNPs
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