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First, congrats on getting the software running and absolutely no to you being more ignorant than other people here. In fact 98% of the people wouldn't even have a clue as to what you just wrote. I would say you're more knowledgeable than 98% of the people here !
Ok, so here's a few observations and tips:
1- "! 1331 SNPs remain after filtering. 1331 are polymorphic." This is absolutely not acceptable and will give you horrible results and in fact is mostly responsible for the 114% standard errors you got on Turkmen. Although its very important for Admixtools 2 not to have missing SNPs in any of your samples ( in other words maxmiss=0) it's just as important that you salvage at least 100,000 SNPs. Drop low coverage samples if you have to
2- Assuming you were able to get close to 100,000 SNPs if you still get high SE it means your left pops are too closely related and your right pops are unable to properly distinguish the difference between them. So add some right pops that are very differentially related to one left pop vs the other left pop.
3- Let me know if you need a simple script to convert your FTDNA or Ancestry data to 23andme format
You're on a good track, Good luck !
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