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Thread: The Genomic History of Middle East

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    Default The Genomic History of Middle East

    https://doi.org/10.1016/j.cell.2021.07.013

    Just saw it. Quite interesting.

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    A decent study. Someone could extract the raw data from there.

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    They have some Omani samples.

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    I saw on Anthrogenica someone created plink dataset for this work but without Oman samples, for unexplained reason...

    I managed to convert those samples by myself using vbknethio pipeline again.

    There are heterogenous.

    HTML Code:
    oman1,12.03,0,1.87,1.5,1.3,0.91,6.04,8.9,21.11,0,23.22,23.11
    oman2,21.42,0,2.36,0,7.22,0.88,4.56,4.16,28.05,0.53,26.8,4.03
    oman3,6.41,0,3.49,1.27,3.7,0,2.55,7.39,39.69,0,31.58,3.91
    

    Last edited by Lucas; 09-15-2021 at 06:55 PM.

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    Quote Originally Posted by Lucas View Post
    I saw on Anthrogenica someone created plink dataset for this work but without Oman samples, for unexplained reason...

    I managed to convert those samples by myself using vbknethio pipeline again.

    There are heterogenous.

    HTML Code:
    Filename    Gedrosia    Siberian    Northwest_African    Southeast_Asian    Atlantic_Med    North_European    South_Asian    East_African    Southwest_Asian    East_Asian    Caucasus    Sub_Saharan
    oman_1.txt    12,03    0    1,87    1,5    1,3    0,91    6,04    8,9    21,11    0    23,22    23,11
    oman2.txt    21,42    0    2,36    0    7,22    0,88    4,56    4,16    28,05    0,53    26,8    4,03
    oman3.txt.txt    6,41    0    3,49    1,27    3,7    0    2,55    7,39    39,69    0    31,58    3,91
    

    One has high SSA admixture but I've averaged all 3 anyway.

    =====

    Warning:

    I have them numbered as 1, 2 and 3 differently than Lukasz:

    Eurogenes K13:

    Code:
    OMAN1.txt,0,0.39,4.93,11.55,40.82,27.73,3.34,1.19,0,0,0,6.10,3.96
    OMAN2.txt,0,1.38,2.01,25.58,33.17,22.72,6.19,0,0.46,0.62,0,3.71,4.17
    OMAN3.txt,0,0.84,3.63,13.31,27.11,13.54,8.40,1.94,0,0,0.49,6.64,24.10
    Eurogenes K15:

    Code:
    OMAN1,0,0,1.88,0,3.84,10.07,42.25,27.29,3.10,1.15,0,0,0,7.05,3.38
    OMAN2,0,1.31,0.25,4.23,0,18.68,38.04,21.97,6.82,0,0.15,0.58,0,3.91,4.07
    OMAN3,0.77,0.07,1.19,1.23,2.21,10.25,28.82,13.22,8.54,2.08,0,0,0.36,8.07,23.20

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