Table S2. Average ancestry proportions for 45 Latin American groups. Ancestry proportions were inferred using supervised ADMIXTURE. Latin American groups were organized at an administrative division level (i.e. country, state or city when information is available). IA, EUR, EAS and AFR stand for the Average proportion of Indigenous American, European, East Asian, and African ancestries, respectively. |
Group |
IA |
EUR |
EAS |
AFR |
Number of Individuals |
Number of Projects included |
PHS / Project Name |
FST |
Brazil* |
0.111 |
0.505 |
0.014 |
0.370 |
357 |
1 |
phs001599 |
- |
Brazil_Bahia |
0.056 |
0.413 |
0.011 |
0.520 |
1,129 |
1 |
EPIGEN |
- |
Brazil_Bambui |
0.063 |
0.737 |
0.013 |
0.187 |
679 |
1 |
EPIGEN |
- |
Brazil_Belo_Horizonte |
0.053 |
0.449 |
0.011 |
0.487 |
680 |
1 |
phs001468 |
- |
Brazil_Juiz_de_Fora |
0.043 |
0.349 |
0.010 |
0.597 |
219 |
1 |
phs001468 |
- |
Brazil_Montes_Claros |
0.095 |
0.463 |
0.010 |
0.432 |
295 |
1 |
phs001468 |
- |
Brazil_Pernambuco |
0.099 |
0.481 |
0.014 |
0.406 |
431 |
1 |
phs001468 |
- |
Brazil_Rio_Grande_do_Sul_1 |
0.083 |
0.803 |
0.017 |
0.096 |
13 |
1 |
LARGE-PD |
- |
Brazil_Rio_Grande_do_Sul_2 |
0.125 |
0.675 |
0.012 |
0.188 |
1,335 |
1 |
phs001810 |
- |
Brazil_Rio_Grande_do_Sul_3 |
0.069 |
0.752 |
0.011 |
0.167 |
3,099 |
1 |
EPIGEN |
- |
Brazil_RibeiraoPreto |
0.055 |
0.803 |
0.029 |
0.114 |
193 |
1 |
LARGE-PD |
- |
Brazil_Rio_de_Janeiro |
0.066 |
0.376 |
0.012 |
0.546 |
657 |
1 |
phs001468 |
- |
Brazil_Sao_Paulo |
0.090 |
0.535 |
0.013 |
0.362 |
101 |
2 |
phs001468 / LARGE-PD |
0.008 |
Chile |
0.445 |
0.508 |
0.016 |
0.031 |
200 |
2 |
phs001385 / LARGE-PD |
0.002 |
Colombia_Antioquia |
0.249 |
0.627 |
0.012 |
0.112 |
405 |
1 |
1000 Genomes Project |
~0 |
Colombia_Bogota |
0.364 |
0.581 |
0.011 |
0.045 |
23 |
1 |
LARGE-PD |
- |
Costa_Rica |
0.312 |
0.606 |
0.013 |
0.069 |
2,022 |
1 |
phs000988 |
- |
Guatemala |
0.744 |
0.198 |
0.017 |
0.042 |
609 |
1 |
National Cancer Institute - Michael Dean Lab |
- |
Mexico |
0.662 |
0.275 |
0.027 |
0.035 |
1,146 |
1 |
phs001388 |
- |
Peru* |
0.768 |
0.191 |
0.013 |
0.028 |
657 |
1 |
LARGE-PD |
- |
Peru_Ancash |
0.873 |
0.114 |
0.005 |
0.009 |
36 |
1 |
Peruvian Genome Project |
- |
Peru_Arequipa |
0.658 |
0.308 |
0.007 |
0.027 |
23 |
1 |
Peruvian Genome Project |
- |
Peru_Ayacucho |
0.867 |
0.120 |
0.003 |
0.009 |
35 |
1 |
Peruvian Genome Project |
- |
Peru_Cusco |
0.818 |
0.163 |
0.005 |
0.014 |
35 |
1 |
Peruvian Genome Project |
- |
Peru_Ica |
0.385 |
0.079 |
0.008 |
0.529 |
29 |
1 |
Peruvian Genome Project |
- |
Peru_La_Libertad |
0.682 |
0.166 |
0.019 |
0.133 |
22 |
1 |
Peruvian Genome Project |
- |
Peru_Lambayaque |
0.849 |
0.084 |
0.020 |
0.048 |
12 |
1 |
Peruvian Genome Project |
- |
Peru_Lima |
0.807 |
0.150 |
0.010 |
0.033 |
3,596 |
3 |
Peruvian Genome Project, Luo et al , 1000 Genomes Project |
0.005 |
Peru_Loreto |
0.808 |
0.158 |
0.010 |
0.024 |
26 |
1 |
Peruvian Genome Project |
- |
Peru_Moquegua |
0.774 |
0.177 |
0.017 |
0.032 |
29 |
1 |
Peruvian Genome Project |
- |
Peru_Puno |
0.975 |
0.022 |
0.002 |
0.001 |
81 |
1 |
Peruvian Genome Project |
0.005 |
Peru_Tacna |
0.889 |
0.088 |
0.005 |
0.018 |
22 |
1 |
Peruvian Genome Project |
- |
Peru_Tumbes |
0.622 |
0.237 |
0.013 |
0.129 |
33 |
1 |
Peruvian Genome Project |
- |
Puerto_Rico |
0.137 |
0.691 |
0.010 |
0.162 |
104 |
1 |
1000 Genomes Project |
- |
Uruguay |
0.110 |
0.800 |
0.014 |
0.076 |
190 |
1 |
LARGE-PD |
- |
USA* |
0.194 |
0.598 |
0.035 |
0.173 |
19,015 |
13 |
phs000101 / phs000306 / phs000517 / phs000864 / phs001057 / phs001237 / phs001395 / phs001416 / phs001446 / phs001515 / phs001584 / phs001662 / phs001726 |
- |
USA_California |
0.378 |
0.522 |
0.031 |
0.069 |
2,093 |
5 |
1000 Genomes Project / phs000517 / phs001193 / phs001603 / phs001604 |
0.0003 |
USA_Hawaii |
0.151 |
0.482 |
0.314 |
0.053 |
59 |
2 |
phs000517 / phs001415 |
0.009 |
USA_Illinois |
0.027 |
0.878 |
0.018 |
0.078 |
570 |
3 |
phs000237 / phs000360 / phs001584 |
0.006 |
USA_New_York_Cuba |
0.045 |
0.604 |
0.007 |
0.344 |
18 |
1 |
phs001644 |
- |
USA_New_York_Dominican |
0.067 |
0.511 |
0.016 |
0.406 |
214 |
1 |
phs001644 |
- |
USA_New_York_Puerto_Rico |
0.123 |
0.580 |
0.014 |
0.283 |
558 |
1 |
phs001644 |
- |
USA_New_York_Others |
0.156 |
0.491 |
0.076 |
0.277 |
7,083 |
3 |
phs000388 / phs000925 / phs001644 |
0.00025 |
USA_Oklahoma |
0.029 |
0.175 |
0.014 |
0.782 |
55 |
1 |
1000 Genomes Project |
- |
USA_Tennessee |
0.011 |
0.841 |
0.012 |
0.136 |
400 |
2 |
phs000360 / phs000237 |
0.07 |
USA_Texas |
0.360 |
0.472 |
0.111 |
0.057 |
609 |
1 |
phs001215 |
- |
USA_Washington |
0.030 |
0.945 |
0.015 |
0.010 |
154 |
1 |
phs000360 |
- |
USA_Wisconsin |
0.018 |
0.961 |
0.017 |
0.004 |
756 |
2 |
phs000360 / phs001584 |
0.001 |
Bookmarks