Eurogenes Biogeographic Ancestry Project

[Otto Prohaska]

Cool thanks. Haven't used R in a long time, what are the commands to type in again?

From the readme:

Once R is running, it will give you a command prompt where you can enter
commands. First, you must change the directory to your working directory.

You can do this from the File -> Change dir menu in Windows, or by using the
setwd command in either Windows or Linux, e.g.:

setwd('/home/johndoe/dodecad')
setwd('c:\\users/johndoe/Dodecad')

Then, enter:

source('standardize.r')

This loads a small program that will convert your data from the
company-specific format to a common format in the next step.

5. At the R prompt, enter:

a. If you have 23andMe data (either v2 or v3 chip):

standardize('johndoe.txt', company='23andMe')

b. if you have Family Finder data (Illumina chip only):

standardize('johndoe.csv', company='ftdna')

This command will write a file called 'genotype.txt' in the working directory;
this contains your genotype in a format understood by DIYDodecad.

Then the command to start the actual analysis is:

system('DIYDodecadWin admix.par')

[Damião de Góis]

Cool thanks. Haven't used R in a long time, what are the commands to type in again?

- Download the necessary files to your DIY directory.

- Start R and change dir on the File Menu to your DIY directory

- Enter source('standardize.r')

- Enter standardize('yourUnziped23andmeRawData.txt', company='23andMe')

- Enter system('DIYDodecadWin admix.par')

- wait for 1h30

[Mark]

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

19.79% East_Mediterranean
15.69% Mediterranean
11.11% Italian
8.09% Near_Eastern
7.00% Iberian
5.48% Arabian
5.07% East_Central_Europea
4.14% Central_European
3.99% West_Mediterranean
3.03% West_Caucasian
3.01% East_Balkan
2.64% Armenian
2.22% North_Sea
2.12% North_African
2.09% North_Atlantic
2.05% Basque
1.28% French

0.66% Eastern_European
0.35% Volga-Ural
0.12% Northeast_African
0.06% North_Caucasian

0.00% Amerindian
0.00% Central_African
0.00% East_African
0.00% East_Asian
0.00% East_Central_Asian
0.00% Finnish
0.00% Indo-Chinese
0.00% Malayan
0.00% Oceanian
0.00% Pygmy
0.00% Siberian
0.00% South_Asian
0.00% South_Central_Asian
0.00% South_Chinese
0.00% West_African

[Graham]

Nice. My Italian is: 6.71% Italian

You have quite a lot of North Atlantic and Basque, and also higher on the Finnish too, and much lower on the central European stuff. Ultra-Brit

It'a very North-West European. European as a whole goes up to 99.67%. Can't wait to test my parents.

[Jackson]

It'a very North-West European. European as a whole goes up to 99.67%. Can't wait to test my parents.

Yeah will be awesome to see how they turn out, and what you get from where.

Here are my Grandmother's results in order. Celtiberian admixture
I guess she's quite a British Isles mix because they don't all correlate, like more East Euro, Balkan, less Central Euro, much more Iberian and more North Sea, but much lower Basque than yourself, kinda weird mix.
Still it's pretty consistent in that most calculators put her slightly south-west of the English average, like 3/4 English 1/4 Cornish, which is consistent enough with her ancestry. I think she is 1/2 Cheshire, 1/4 Hertfordshire 1/4 Devonshire I think. Or 1/2 Cheshire, 1/4 London 1/8 Hertfordshire, 1/8 Devonshire - Can't remember which.

19.15% Iberian
16.93% North_Sea
16.52% North_Atlantic
9.94% French
8.48% East_Central_Europea
8.18% Italian
6.84% Central_European
5.35% Finnish
3.41% Eastern_European
2.50% East_Balkan
1.69% West_Mediterranean
0.88% Volga-Ural
0.07% Basque
0.03% North_Caucasian

All others 0%.

[Atlantic Islander]

Posted it right after running it, but not in order, so here's mine in order:

28.29% Iberian
13.68% Italian
----------------
8.53% North_Sea
7.69% West_Mediterranean
7.58% North_Atlantic
----------------
6.05% French
5.47% Central_European
4.16% North_African
----------------
3.27% Mediterranean
2.98% East_Balkan
2.26% Arabian
2.25% Finnish
1.86% Basque
1.81% East_Mediterranean
1.62% Volga-Ural
----------------
0.74% Northeast_African
0.70% Near_Eastern
0.50% Central_African
0.39% East_Central_Europea
0.13% Oceanian
0.02% East_African
----------------
0.00% Amerindian
0.00% Armenian
0.00% East_Asian
0.00% East_Central_Asian
0.00% Eastern_European
0.00% Indo-Chinese
0.00% Malayan
0.00% North_Caucasian
0.00% Pygmy
0.00% Siberian
0.00% South_Asian
0.00% South_Central_Asian
0.00% South_Chinese
0.00% West_African
0.00% West_Caucasian

[Jackson]

Atlantic Islander, can by Grandmother be an honorary Iberian?

[Atlantic Islander]

I hope some Spanish users will post as well, Gaita, Ibericus please? I need more Iberians to post for comparison.

[Atlantic Islander]

Atlantic Islander, can by Grandmother be an honorary Iberian?

She's lacking a few key components

[Loki]

Finally mine!!

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

20.12% Italian
15.03% Iberian
13.10% North_Atlantic
9.17% Finnish
7.99% North_Sea
6.84% Central_European
6.73% Eastern_European
4.81% East_Central_European
4.38% French
1.86% West_Mediterranean
1.72% South_Central_Asian
1.64% North_Caucasian
1.43% West_African
1.43% Basque
1.15% East_Balkan
0.99% Volga-Ural
0.61% Central_African
0.57% Armenian
0.21% East_Mediterranean
0.12% Mediterranean
0.10% Oceanian
0.01% Malayan
0.00% West_Caucasian
0.00% South_Chinese
0.00% South_Asian
0.00% Siberian
0.00% Pygmy
0.00% Northeast_African
0.00% North_African
0.00% Near_Eastern
0.00% Indo-Chinese
0.00% East_Central_Asian
0.00% East_Asian
0.00% East_African
0.00% Arabian
0.00% Amerindian