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Finns are True Europeans, the rest of us are migrant bastards.
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Hey can someone run my results through please. Will need to find all the downloads etc.. in the mean time & will check parents.
I cant run gedmtach so don't have noise. But shouldn't make much difference.
42.98% -- North_Sea
28.72% -- Atlantic
10.07% -- Eastern_Euro
07.46% -- Baltic
06.63% -- West_Med
01.87% -- West_Asian
01.07% -- Oceanian
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Got it sorted.
Least-squares method.
Using 1 population approximation:
1 Ajvide70 @ 27.727098
2 Ajvide58 @ 28.028856
3 La_Brana-1 @ 29.857283
4 StoraFörvar11 @ 41.19571
5 Gokhem7 @ 45.3078
6 Gokhem2 @ 47.355673
7 Sardinian @ 60.4981
8 Lezgin @ 61.406494
9 MA-1 @ 66.598458
10 Yemenite_Jewish @ 80.926665
11 Australian_Aboriginal @ 88.625593
12 Ethiopian_Ari_cultivator @ 95.469412
13 Sakilli @ 96.336771
14 Evens @ 97.206414
15 Anzick-1 @ 105.772651
16 Dai @ 106.196084
17 Papuan @ 108.180399
18 Yoruban @ 110.170306
18 iterations.
Using 2 populations approximation:
1 Ajvide70+La_Brana-1 @ 27.514483
2 Ajvide58+Ajvide70 @ 27.673452
3 Ajvide70+Ajvide70 @ 27.727098
4 Ajvide58+Ajvide58 @ 28.028856
5 Ajvide58+La_Brana-1 @ 28.222505
6 Ajvide58+Gokhem7 @ 28.722508
7 Ajvide70+Gokhem7 @ 28.732428
8 Ajvide70+Gokhem2 @ 28.979231
9 Gokhem7+La_Brana-1 @ 29.083481
10 Ajvide58+Gokhem2 @ 29.534293
11 La_Brana-1+La_Brana-1 @ 29.857283
12 Gokhem2+La_Brana-1 @ 31.572975
13 Gokhem7+StoraFörvar11 @ 33.945783
14 Ajvide70+StoraFörvar11 @ 34.046364
15 Ajvide70+Sardinian @ 34.223232
16 Ajvide58+StoraFörvar11 @ 34.452735
17 Gokhem2+StoraFörvar11 @ 34.564112
18 La_Brana-1+StoraFörvar11 @ 34.581978
171 iterations.
Using 3 populations approximation:
1 50% Ajvide70 +25% Gokhem7 +25% La_Brana-1 @ 25.19385
2 50% Ajvide70 +25% Ajvide70 +25% Gokhem2 @ 25.255175
3 50% Ajvide70 +25% Ajvide58 +25% Gokhem2 @ 25.344712
4 50% Ajvide70 +25% Ajvide58 +25% Gokhem7 @ 25.438753
5 50% Ajvide58 +25% Ajvide70 +25% Gokhem7 @ 25.47726
6 50% Ajvide70 +25% Ajvide70 +25% Gokhem7 @ 25.511992
7 50% Ajvide58 +25% Ajvide70 +25% Gokhem2 @ 25.545591
8 50% Ajvide58 +25% Gokhem7 +25% La_Brana-1 @ 25.576876
9 50% La_Brana-1 +25% Ajvide70 +25% Gokhem7 @ 25.595651
10 50% Ajvide70 +25% Gokhem2 +25% La_Brana-1 @ 25.6102
11 50% Ajvide58 +25% Ajvide58 +25% Gokhem7 @ 25.627009
12 50% Ajvide58 +25% Ajvide58 +25% Gokhem2 @ 25.855216
13 50% La_Brana-1 +25% Ajvide58 +25% Gokhem7 @ 25.934981
14 50% Ajvide58 +25% Gokhem2 +25% La_Brana-1 @ 26.303102
15 50% Ajvide70 +25% Ajvide70 +25% Sardinian @ 26.631123
16 50% La_Brana-1 +25% Ajvide70 +25% Gokhem2 @ 26.654826
17 50% La_Brana-1 +25% Gokhem7 +25% La_Brana-1 @ 26.684894
18 50% Ajvide70 +25% Ajvide58 +25% Sardinian @ 26.750846
2907 iterations.
Using 4 populations approximation:
1 Ajvide70+Ajvide70+Gokhem7+La_Brana-1 @ 25.19385
2 Ajvide70+Ajvide70+Ajvide70+Gokhem2 @ 25.255175
3 Ajvide58+Ajvide70+Gokhem7+La_Brana-1 @ 25.329967
4 Ajvide58+Ajvide70+Ajvide70+Gokhem2 @ 25.344712
5 Ajvide58+Ajvide70+Ajvide70+Gokhem7 @ 25.438753
6 Ajvide58+Ajvide58+Ajvide70+Gokhem7 @ 25.47726
7 Ajvide70+Ajvide70+Ajvide70+Gokhem7 @ 25.511992
8 Ajvide58+Ajvide58+Ajvide70+Gokhem2 @ 25.545591
9 Ajvide58+Ajvide58+Gokhem7+La_Brana-1 @ 25.576876
10 Ajvide70+Gokhem7+La_Brana-1+La_Brana-1 @ 25.595651
11 Ajvide70+Ajvide70+Gokhem2+La_Brana-1 @ 25.6102
12 Ajvide58+Ajvide58+Ajvide58+Gokhem7 @ 25.627009
13 Ajvide58+Ajvide58+Ajvide58+Gokhem2 @ 25.855216
14 Ajvide58+Ajvide70+Gokhem2+La_Brana-1 @ 25.904086
15 Ajvide58+Gokhem7+La_Brana-1+La_Brana-1 @ 25.934981
16 Ajvide58+Ajvide58+Gokhem2+La_Brana-1 @ 26.303102
17 Ajvide70+Ajvide70+Ajvide70+Sardinian @ 26.631123
18 Ajvide70+Gokhem2+La_Brana-1+La_Brana-1 @ 26.654826
19 Gokhem7+La_Brana-1+La_Brana-1+La_Brana-1 @ 26.684894
20 Ajvide58+Ajvide70+Ajvide70+Sardinian @ 26.750846
21 Ajvide58+Ajvide58+Ajvide70+Sardinian @ 26.97575
22 Ajvide70+Ajvide70+La_Brana-1+Sardinian @ 27.027888
23 Ajvide58+Gokhem2+La_Brana-1+La_Brana-1 @ 27.133518
24 Ajvide70+Ajvide70+Ajvide70+La_Brana-1 @ 27.288274
25 Ajvide58+Ajvide58+Ajvide58+Sardinian @ 27.303233
26 Ajvide58+Ajvide70+La_Brana-1+Sardinian @ 27.340566
27 Ajvide58+Ajvide70+Ajvide70+La_Brana-1 @ 27.403039
28 Ajvide70+Ajvide70+La_Brana-1+La_Brana-1 @ 27.514483
29 Ajvide58+Ajvide58+Ajvide70+La_Brana-1 @ 27.620562
30 Ajvide58+Ajvide70+Ajvide70+Ajvide70 @ 27.648867
31 Ajvide58+Ajvide58+Ajvide70+Ajvide70 @ 27.673452
32 Ajvide70+Ajvide70+Ajvide70+Ajvide70 @ 27.727098
33 Ajvide58+Ajvide58+La_Brana-1+Sardinian @ 27.752452
34 Ajvide58+Ajvide58+Ajvide58+Ajvide70 @ 27.800581
35 Ajvide58+Ajvide70+La_Brana-1+La_Brana-1 @ 27.819637
36 Ajvide58+Ajvide58+Ajvide58+La_Brana-1 @ 27.938441
5985 iterations.
Gaussian method.
Noise dispersion set to 0.33296
Using 1 population approximation:
1 Ajvide58 @ 13.103827
2 La_Brana-1 @ 18.450139
3 Ajvide70 @ 18.924507
4 Lezgin @ 21.364164
5 StoraFörvar11 @ 21.487481
6 Gokhem7 @ 25.560742
7 Sardinian @ 26.331852
8 Gokhem2 @ 27.690204
9 Evens @ 63.955724
10 Sakilli @ 64.353423
11 Ethiopian_Ari_cultivator @ 73.01475
12 Yemenite_Jewish @ 73.651619
13 MA-1 @ 74.035762
14 Dai @ 95.452639
15 Yoruban @ 121.013781
16 Papuan @ 123.212413
17 Australian_Aboriginal @ 125.961678
18 Anzick-1 @ 126.699981
18 iterations.
Using 2 populations approximation:
1 Gokhem7+La_Brana-1 @ 9.560638
2 Ajvide58+Gokhem7 @ 10.121326
3 Ajvide70+Gokhem7 @ 10.704271
4 Ajvide58+Gokhem2 @ 11.016285
5 Ajvide58+Sardinian @ 11.219704
6 Ajvide70+Gokhem2 @ 11.263743
7 Ajvide70+Sardinian @ 11.346701
8 Gokhem2+La_Brana-1 @ 11.375262
9 La_Brana-1+Sardinian @ 11.919004
10 Gokhem7+StoraFörvar11 @ 12.480814
11 Gokhem2+StoraFörvar11 @ 12.504684
12 Sardinian+StoraFörvar11 @ 12.962451
13 Ajvide58+Ajvide58 @ 13.103827
14 Ajvide58+La_Brana-1 @ 14.454137
15 Gokhem7+Lezgin @ 14.737601
16 Ajvide58+Ajvide70 @ 14.892528
17 Gokhem2+Lezgin @ 14.956495
18 Ajvide58+Lezgin @ 15.190361
171 iterations.
Using 3 populations approximation:
1 50% La_Brana-1 +25% Gokhem7 +25% La_Brana-1 @ 8.863443
2 50% La_Brana-1 +25% Ajvide58 +25% Gokhem7 @ 8.953197
3 50% Ajvide58 +25% Gokhem7 +25% La_Brana-1 @ 9.103996
4 50% La_Brana-1 +25% Ajvide70 +25% Gokhem7 @ 9.190851
5 50% Ajvide58 +25% Ajvide58 +25% Gokhem7 @ 9.380569
6 50% Ajvide70 +25% Gokhem7 +25% La_Brana-1 @ 9.505975
7 50% Gokhem7 +25% La_Brana-1 +25% La_Brana-1 @ 9.560638
8 50% Ajvide58 +25% Ajvide70 +25% Gokhem7 @ 9.663266
9 50% Gokhem7 +25% Ajvide58 +25% La_Brana-1 @ 9.792736
10 50% La_Brana-1 +25% Gokhem7 +25% StoraFörvar11 @ 9.833686
11 50% Ajvide70 +25% Ajvide58 +25% Gokhem7 @ 9.84595
12 50% Ajvide58 +25% Ajvide58 +25% Sardinian @ 9.924944
13 50% Ajvide58 +25% La_Brana-1 +25% Sardinian @ 9.940639
14 50% La_Brana-1 +25% Gokhem2 +25% Gokhem7 @ 9.980971
15 50% Ajvide58 +25% Gokhem2 +25% Gokhem7 @ 10.020438
16 50% Ajvide70 +25% Ajvide70 +25% Gokhem7 @ 10.024741
17 50% La_Brana-1 +25% Ajvide58 +25% Sardinian @ 10.051074
18 50% Ajvide58 +25% Ajvide70 +25% Sardinian @ 10.100561
2907 iterations.
Using 4 populations approximation:
1 Gokhem7+La_Brana-1+La_Brana-1+La_Brana-1 @ 8.863443
2 Ajvide58+Gokhem7+La_Brana-1+La_Brana-1 @ 8.953197
3 Ajvide58+Ajvide58+Gokhem7+La_Brana-1 @ 9.103996
4 Ajvide70+Gokhem7+La_Brana-1+La_Brana-1 @ 9.190851
5 Ajvide58+Ajvide70+Gokhem7+La_Brana-1 @ 9.358741
6 Ajvide58+Ajvide58+Ajvide58+Gokhem7 @ 9.380569
7 Ajvide70+Ajvide70+Gokhem7+La_Brana-1 @ 9.505975
8 Gokhem7+Gokhem7+La_Brana-1+La_Brana-1 @ 9.560638
9 Ajvide58+Ajvide58+Ajvide70+Gokhem7 @ 9.663266
10 Ajvide58+Gokhem7+Gokhem7+La_Brana-1 @ 9.792736
11 Gokhem7+La_Brana-1+La_Brana-1+StoraFörvar11 @ 9.833686
12 Ajvide58+Ajvide70+Ajvide70+Gokhem7 @ 9.84595
13 Ajvide58+Ajvide58+Ajvide58+Sardinian @ 9.924944
14 Ajvide58+Ajvide58+La_Brana-1+Sardinian @ 9.940639
15 Ajvide58+Gokhem2+Gokhem7+La_Brana-1 @ 9.970682
16 Gokhem2+Gokhem7+La_Brana-1+La_Brana-1 @ 9.980971
17 Ajvide58+Ajvide58+Gokhem2+Gokhem7 @ 10.020438
18 Ajvide70+Ajvide70+Ajvide70+Gokhem7 @ 10.024741
19 Ajvide58+La_Brana-1+La_Brana-1+Sardinian @ 10.051074
20 Ajvide58+Gokhem7+La_Brana-1+StoraFörvar11 @ 10.062323
21 Ajvide58+Ajvide70+La_Brana-1+Sardinian @ 10.089543
22 Ajvide58+Ajvide58+Ajvide70+Sardinian @ 10.100561
23 Ajvide70+Gokhem7+Gokhem7+La_Brana-1 @ 10.104101
24 Ajvide58+Ajvide58+Gokhem7+Gokhem7 @ 10.121326
25 Ajvide70+Ajvide70+La_Brana-1+Sardinian @ 10.14394
26 Ajvide70+La_Brana-1+La_Brana-1+Sardinian @ 10.177182
27 Ajvide58+Ajvide70+Ajvide70+Sardinian @ 10.182825
28 Ajvide70+Gokhem7+La_Brana-1+StoraFörvar11 @ 10.194206
29 Ajvide70+Gokhem2+Gokhem7+La_Brana-1 @ 10.201178
30 La_Brana-1+La_Brana-1+La_Brana-1+Sardinian @ 10.217306
31 Ajvide58+Ajvide58+Gokhem2+La_Brana-1 @ 10.2272
32 Ajvide58+Ajvide58+Ajvide58+Gokhem2 @ 10.253347
33 Ajvide70+Ajvide70+Ajvide70+Sardinian @ 10.260956
34 Ajvide58+Ajvide70+Gokhem2+Gokhem7 @ 10.265102
35 Ajvide58+Gokhem2+La_Brana-1+La_Brana-1 @ 10.285913
36 Ajvide58+Ajvide58+Gokhem7+Sardinian @ 10.370391
5985 iterations.
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Can someone help Davidski?
http://eurogenes.blogspot.fi/2014/07...1-related.htmlBy the way, I'm short on bandwidth this month, so here's a deal. If you guys can download the Bronze Age Dane and the two Thracians, then use the SRA Toolkit to turn the SRA files into bam files, zip these up and upload them somewhere, then I can download them.
http://www.ncbi.nlm.nih.gov/sites/books/NBK158900
The problem is that I don't want to use up several gigs just to get a couple of samples with a few thousand SNPs.
July 15, 2014 at 9:31 PM
"If the enemy is not attacking from the East it has flanked." Finnish proverb
http://www.youtube.com/watch?v=Xu8D9GaQwIs
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